Wall clock time and date at job start Wed Apr 1 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81396 * 103.00389 * 2 1 4 4 H 1.09000 * 109.47095 * 53.84566 * 3 2 1 5 5 C 1.53005 * 109.47147 * 293.85242 * 3 2 1 6 6 O 1.42908 * 109.46819 * 294.99670 * 5 3 2 7 7 C 1.53000 * 109.47547 * 173.84986 * 3 2 1 8 8 H 1.09000 * 109.47028 * 60.99637 * 7 3 2 9 9 C 1.52999 * 109.47298 * 180.99829 * 7 3 2 10 10 N 1.46503 * 109.46746 * 301.00121 * 7 3 2 11 11 S 1.65600 * 119.99895 * 144.30122 * 10 7 3 12 12 O 1.42095 * 106.40109 * 178.53832 * 11 10 7 13 13 O 1.42104 * 106.39989 * 311.45786 * 11 10 7 14 14 C 1.76201 * 107.21982 * 64.99580 * 11 10 7 15 15 C 1.38654 * 119.87573 * 269.72756 * 14 11 10 16 16 C 1.38609 * 120.50180 * 179.72103 * 15 14 11 17 17 C 1.37639 * 120.25032 * 0.55487 * 16 15 14 18 18 C 1.40703 * 119.74102 * 359.72156 * 17 16 15 19 19 C 1.41398 * 120.24591 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00037 * 149.02660 * 19 18 17 21 21 C 1.39941 * 119.99741 * 329.02415 * 19 18 17 22 22 N 1.30825 * 120.00298 * 347.86724 * 21 19 18 23 23 Si 1.86799 * 119.99701 * 167.86119 * 21 19 18 24 24 H 1.48497 * 109.47295 * 90.00400 * 23 21 19 25 25 H 1.48508 * 109.47103 * 210.00138 * 23 21 19 26 26 H 1.48501 * 109.47346 * 330.00013 * 23 21 19 27 27 C 1.37594 * 119.87293 * 90.00197 * 14 11 10 28 28 H 1.09002 * 109.47652 * 185.49386 * 1 2 3 29 29 H 1.08998 * 109.47197 * 305.49986 * 1 2 3 30 30 H 1.09010 * 109.47208 * 65.49474 * 1 2 3 31 31 H 1.08994 * 109.47320 * 54.99180 * 5 3 2 32 32 H 1.09001 * 109.47243 * 174.99888 * 5 3 2 33 33 H 0.96698 * 113.99848 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46721 * 60.00025 * 9 7 3 35 35 H 1.09001 * 109.47043 * 179.97438 * 9 7 3 36 36 H 1.08998 * 109.47160 * 300.00142 * 9 7 3 37 37 H 0.96997 * 120.00125 * 324.29817 * 10 7 3 38 38 H 1.08007 * 119.74994 * 0.02562 * 15 14 11 39 39 H 1.08001 * 119.87783 * 180.25502 * 16 15 14 40 40 H 1.07995 * 120.13584 * 179.74482 * 17 16 15 41 41 H 0.96998 * 119.99868 * 179.97438 * 22 21 19 42 42 H 1.07993 * 120.13040 * 359.97369 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7131 2.2579 0.8298 5 6 1.7685 2.3956 -1.3193 6 8 2.5199 1.8341 -2.3974 7 6 3.7343 1.9418 0.1545 8 1 4.2424 1.4666 -0.6846 9 6 4.0759 3.4329 0.1795 10 7 4.1721 1.3193 1.4064 11 16 5.6419 0.5604 1.4840 12 8 5.7849 0.0984 2.8201 13 8 5.7105 -0.2977 0.3534 14 6 6.8786 1.7932 1.2486 15 6 7.3316 2.0818 -0.0296 16 6 8.2999 3.0532 -0.2303 17 6 8.8309 3.7346 0.8412 18 6 8.3829 3.4460 2.1434 19 6 8.9206 4.1400 3.2518 20 1 8.3100 4.3203 4.1241 21 6 10.2443 4.5931 3.2185 22 7 11.0544 4.1779 2.2789 23 14 10.8543 5.7909 4.5156 24 1 11.4042 5.0341 5.6688 25 1 11.9175 6.6500 3.9351 26 1 9.7263 6.6411 4.9739 27 6 7.3952 2.4618 2.3346 28 1 -0.3634 -1.0229 0.0984 29 1 -0.3633 0.5967 0.8366 30 1 -0.3634 0.4263 -0.9352 31 1 0.7082 2.1944 -1.4720 32 1 1.9326 3.4727 -1.2843 33 1 2.2850 2.1873 -3.2664 34 1 3.5677 3.9080 1.0187 35 1 5.1531 3.5571 0.2901 36 1 3.7501 3.8960 -0.7519 37 1 3.6011 1.3518 2.1898 38 1 6.9234 1.5492 -0.8759 39 1 8.6425 3.2728 -1.2307 40 1 9.5882 4.4882 0.6832 41 1 11.9717 4.4922 2.2556 42 1 7.0438 2.2326 3.3297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:01 Heat of formation + Delta-G solvation = -135.179982 kcal Electronic energy + Delta-G solvation = -26476.080921 eV Core-core repulsion = 22672.921658 eV Total energy + Delta-G solvation = -3803.159263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.49402 -39.03230 -38.20578 -36.89670 -36.76042 -35.60460 -32.35361 -31.89229 -31.62045 -29.97229 -28.99607 -27.31001 -25.09511 -23.65038 -22.81660 -21.89219 -20.65365 -19.67605 -18.64852 -18.46387 -17.86317 -17.64737 -16.88831 -16.62751 -16.56080 -16.07811 -15.70662 -15.31532 -15.20809 -15.03940 -14.78981 -14.43193 -14.29786 -14.00648 -13.86245 -13.56540 -13.37617 -13.23660 -13.20314 -13.16082 -13.04942 -12.99534 -12.81079 -12.61386 -12.41988 -12.38704 -12.18975 -11.91668 -11.52845 -11.40929 -11.13397 -10.93209 -10.65097 -10.38557 -9.82599 -9.47649 -8.67209 -8.56029 -6.45270 -0.49481 0.40486 0.74344 0.85309 1.38464 1.45381 1.52489 1.75165 2.13438 2.20522 2.59235 2.81777 3.30442 3.46473 3.50838 3.71165 3.88281 4.17823 4.28065 4.32030 4.36152 4.38931 4.43975 4.45867 4.52230 4.64072 4.72096 4.84688 4.89327 4.92224 4.94821 5.06258 5.21950 5.25148 5.41548 5.42427 5.56772 5.87842 5.96008 6.10798 6.14408 6.53845 6.82949 6.86361 7.03219 8.32252 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.003106 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.323011 B = 9012.418009 C = 9305.686456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.305 6.305 3 C -0.051 4.051 4 H 0.128 0.872 5 C 0.082 3.918 6 O -0.580 6.580 7 C 0.173 3.827 8 H 0.086 0.914 9 C -0.170 4.170 10 N -1.097 6.097 11 S 2.711 3.289 12 O -0.999 6.999 13 O -0.987 6.987 14 C -0.636 4.636 15 C -0.133 4.133 16 C -0.122 4.122 17 C -0.126 4.126 18 C 0.067 3.933 19 C -0.502 4.502 20 H 0.080 0.920 21 C 0.034 3.966 22 N -0.836 5.836 23 Si 0.985 3.015 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.256 1.256 27 C -0.135 4.135 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.396 0.604 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.426 0.574 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.289 0.711 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.242 2.419 -6.929 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.078 6.078 3 C -0.181 4.181 4 H 0.146 0.854 5 C 0.002 3.998 6 O -0.388 6.388 7 C 0.065 3.935 8 H 0.105 0.895 9 C -0.230 4.230 10 N -0.858 5.858 11 S 2.805 3.195 12 O -0.990 6.990 13 O -0.977 6.977 14 C -0.725 4.725 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.146 4.146 18 C 0.064 3.936 19 C -0.532 4.532 20 H 0.098 0.902 21 C -0.180 4.180 22 N -0.463 5.463 23 Si 0.805 3.195 24 H -0.192 1.192 25 H -0.190 1.190 26 H -0.179 1.179 27 C -0.156 4.156 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.246 0.754 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.263 0.737 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.832 0.274 -6.535 19.936 hybrid contribution -0.171 2.177 0.418 2.223 sum -19.003 2.451 -6.117 20.113 Atomic orbital electron populations 1.23459 0.91619 1.07198 1.05896 1.87811 1.09869 1.12229 1.97884 1.23730 0.98305 0.94067 1.01973 0.85433 1.22342 0.94979 0.97286 0.85234 1.86599 1.64611 1.68790 1.18790 1.20514 0.93470 0.94585 0.84918 0.89547 1.22407 1.02773 0.93668 1.04131 1.55250 1.34959 1.75131 1.20497 1.00923 0.73082 0.73538 0.71983 1.93490 1.86604 1.80335 1.38528 1.93508 1.86880 1.63793 1.53522 1.30146 1.20822 1.21194 1.00349 1.20409 1.00472 1.00388 0.94152 1.21117 0.97308 0.97078 0.98608 1.21582 1.00335 1.00348 0.92324 1.17998 0.91224 0.90582 0.93818 1.19818 0.97799 1.33472 1.02153 0.90207 1.26727 0.96285 0.96318 0.98671 1.69805 1.06822 1.36858 1.32790 0.85159 0.78603 0.77937 0.77761 1.19164 1.19008 1.17913 1.20865 1.01826 0.96962 0.95973 0.87751 0.89072 0.89392 0.91470 0.89957 0.75367 0.90346 0.92921 0.89053 0.73711 0.85620 0.85459 0.87244 0.90011 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.38 113.37 1.18 -0.30 16 2 S -0.30 -7.16 21.12 -56.49 -1.19 -8.35 16 3 C -0.05 -0.93 2.34 30.60 0.07 -0.86 16 4 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 5 C 0.08 1.06 6.11 71.98 0.44 1.50 16 6 O -0.58 -9.98 12.52 -148.98 -1.86 -11.84 16 7 C 0.17 4.33 2.31 44.99 0.10 4.44 16 8 H 0.09 2.64 6.88 -2.39 -0.02 2.63 16 9 C -0.17 -3.81 9.19 71.98 0.66 -3.15 16 10 N -1.10 -31.77 4.97 -169.38 -0.84 -32.61 16 11 S 2.71 107.08 5.71 -56.49 -0.32 106.75 16 12 O -1.00 -44.71 17.27 -128.00 -2.21 -46.92 16 13 O -0.99 -43.09 16.60 -128.00 -2.12 -45.22 16 14 C -0.64 -28.03 5.08 22.22 0.11 -27.92 16 15 C -0.13 -5.70 8.68 22.46 0.20 -5.50 16 16 C -0.12 -5.36 10.02 22.22 0.22 -5.14 16 17 C -0.13 -6.33 8.65 22.73 0.20 -6.14 16 18 C 0.07 3.53 5.51 -21.29 -0.12 3.42 16 19 C -0.50 -26.61 9.05 23.46 0.21 -26.40 16 20 H 0.08 4.06 7.87 -2.91 -0.02 4.03 16 21 C 0.03 1.68 5.21 85.26 0.44 2.12 16 22 N -0.84 -43.18 11.07 21.83 0.24 -42.94 16 23 Si 0.98 37.66 29.58 68.60 2.03 39.69 16 24 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 26 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 27 C -0.14 -6.66 9.26 22.73 0.21 -6.45 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.89 7.30 -2.38 -0.02 0.87 16 31 H 0.07 0.61 6.94 -2.39 -0.02 0.59 16 32 H 0.08 0.73 6.73 -2.39 -0.02 0.72 16 33 H 0.40 3.04 9.12 -74.06 -0.68 2.36 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.54 6.31 -2.39 -0.02 1.53 16 36 H 0.09 1.58 6.57 -2.39 -0.02 1.57 16 37 H 0.43 10.16 8.84 -96.75 -0.86 9.30 16 38 H 0.13 4.87 7.59 -2.91 -0.02 4.85 16 39 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 40 H 0.11 5.67 6.45 -2.91 -0.02 5.65 16 41 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 42 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -73.93 369.07 -2.82 -76.75 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.46 Total: 35.05 kcal Atomic # 6 Polarization: -74.30 SS G_CDS: 3.93 Total: -70.37 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -0.60 Total: -75.55 kcal Atomic # 8 Polarization: -97.78 SS G_CDS: -6.20 Total: -103.98 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 16 Polarization: 99.92 SS G_CDS: -1.52 Total: 98.40 kcal Total: -73.93 -2.82 -76.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.433 kcal (2) G-P(sol) polarization free energy of solvation -73.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds