Wall clock time and date at job start Wed Apr 1 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46516 * 2 1 4 4 C 1.52991 * 109.46925 * 240.00038 * 2 1 3 5 5 S 1.81405 * 109.47106 * 179.97438 * 4 2 1 6 6 C 1.81403 * 102.99998 * 179.97438 * 5 4 2 7 7 O 1.42098 * 109.47028 * 296.38597 * 5 4 2 8 8 N 1.46498 * 109.47453 * 119.99638 * 2 1 3 9 9 C 1.46503 * 119.99725 * 60.00102 * 8 2 1 10 10 S 1.65597 * 120.00117 * 240.00396 * 8 2 1 11 11 O 1.42101 * 106.40084 * 203.53776 * 10 8 2 12 12 O 1.42098 * 106.40300 * 336.45581 * 10 8 2 13 13 C 1.76199 * 107.22113 * 89.99819 * 10 8 2 14 14 C 1.38653 * 119.87683 * 269.72934 * 13 10 8 15 15 C 1.38610 * 120.50326 * 179.72353 * 14 13 10 16 16 C 1.37649 * 120.24566 * 0.54585 * 15 14 13 17 17 C 1.40689 * 119.74188 * 359.72946 * 16 15 14 18 18 C 1.41404 * 120.24236 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99936 * 150.22135 * 18 17 16 20 20 C 1.39939 * 119.99643 * 330.21727 * 18 17 16 21 21 N 1.30830 * 119.99861 * 161.72872 * 20 18 17 22 22 Si 1.86802 * 120.00259 * 341.72842 * 20 18 17 23 23 H 1.48500 * 109.46909 * 95.41146 * 22 20 18 24 24 H 1.48500 * 109.46863 * 215.40868 * 22 20 18 25 25 H 1.48496 * 109.46985 * 335.41151 * 22 20 18 26 26 C 1.37599 * 119.87255 * 89.99870 * 13 10 8 27 27 H 1.08996 * 109.47456 * 59.99837 * 1 2 3 28 28 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46971 * 299.99711 * 1 2 3 30 30 H 1.08996 * 109.47440 * 299.99389 * 4 2 1 31 31 H 1.09000 * 109.47602 * 59.99503 * 4 2 1 32 32 H 1.08992 * 109.47001 * 60.00114 * 6 5 4 33 33 H 1.09000 * 109.46751 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46845 * 299.99675 * 6 5 4 35 35 H 1.08996 * 109.47336 * 89.99879 * 9 8 2 36 36 H 1.09003 * 109.46818 * 210.00021 * 9 8 2 37 37 H 1.08999 * 109.47183 * 330.00097 * 9 8 2 38 38 H 1.08000 * 119.74797 * 359.97438 * 14 13 10 39 39 H 1.07993 * 119.87751 * 180.25561 * 15 14 13 40 40 H 1.08004 * 120.12363 * 179.74977 * 16 15 14 41 41 H 0.96992 * 120.00158 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.13190 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 -1.2492 5 16 3.8540 -0.7206 -1.2496 6 6 4.2620 -1.6051 -2.7799 7 8 4.3271 0.6166 -1.3344 8 7 2.0184 -0.6905 1.1962 9 6 1.6645 -2.0931 1.4280 10 16 2.9704 0.1144 2.2862 11 8 3.7119 -0.8787 2.9814 12 8 3.5794 1.1831 1.5748 13 6 1.8961 0.8537 3.4710 14 6 1.4158 2.1374 3.2616 15 6 0.5654 2.7294 4.1823 16 6 0.1973 2.0512 5.3222 17 6 0.6832 0.7503 5.5479 18 6 0.3115 0.0437 6.7150 19 1 0.2512 -1.0344 6.6974 20 6 0.0218 0.7416 7.8929 21 7 -0.6530 0.1580 8.8499 22 14 0.5985 2.5064 8.0989 23 1 -0.4952 3.4330 7.7108 24 1 0.9685 2.7438 9.5173 25 1 1.7805 2.7452 7.2323 26 6 1.5415 0.1570 4.6034 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6766 -0.2075 -2.1392 32 1 3.8427 -1.0698 -3.6318 33 1 5.3451 -1.6658 -2.8867 34 1 3.8435 -2.6108 -2.7409 35 1 2.4158 -2.7376 0.9717 36 1 1.6239 -2.2851 2.5003 37 1 0.6905 -2.3002 0.9847 38 1 1.7031 2.6787 2.3723 39 1 0.1940 3.7281 4.0070 40 1 -0.4622 2.5159 6.0403 41 1 -0.8541 0.6418 9.6661 42 1 1.9199 -0.8412 4.7665 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619496091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:41 Heat of formation + Delta-G solvation = -83.144894 kcal Electronic energy + Delta-G solvation = -26862.749083 eV Core-core repulsion = 23061.846230 eV Total energy + Delta-G solvation = -3800.902852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -37.94081 -37.62660 -36.81546 -35.65420 -35.40409 -33.79709 -31.72377 -30.74259 -30.18603 -29.18741 -27.47407 -26.41141 -25.38872 -22.41248 -21.24528 -20.89790 -18.82800 -18.14534 -17.61461 -17.27874 -16.36397 -16.06338 -15.63716 -15.34513 -14.95875 -14.89527 -14.67196 -14.20187 -13.96593 -13.79184 -13.43826 -13.20171 -13.06048 -12.89766 -12.81722 -12.55051 -12.33822 -12.27061 -12.14407 -11.86980 -11.71141 -11.68596 -11.63956 -11.48726 -11.22319 -11.07101 -10.91197 -10.80284 -10.37668 -10.17712 -10.01739 -9.79169 -9.34687 -9.02050 -8.29559 -8.28744 -7.89798 -7.10433 -4.66017 0.79749 1.37264 1.89235 2.39772 2.50982 2.98494 3.10618 3.19437 3.26268 3.71273 3.84484 4.08600 4.26230 4.54538 4.63817 4.84605 4.88661 4.94898 5.03004 5.14098 5.22701 5.32621 5.50764 5.57727 5.63747 5.66416 5.67826 5.80350 5.87687 6.00127 6.08706 6.17816 6.23251 6.43090 6.48151 6.69309 6.85026 7.06687 7.17606 7.37590 7.59522 7.75457 8.16063 8.40348 8.60017 9.91407 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.003327 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.950437 B = 8414.059817 C = 8503.699988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 H 0.106 0.894 4 C -0.454 4.454 5 S 1.225 4.775 6 C -0.496 4.496 7 O -0.822 6.822 8 N -1.005 6.005 9 C 0.085 3.915 10 S 2.668 3.332 11 O -0.958 6.958 12 O -0.952 6.952 13 C -0.624 4.624 14 C -0.156 4.156 15 C -0.092 4.092 16 C -0.197 4.197 17 C 0.074 3.926 18 C -0.444 4.444 19 H 0.096 0.904 20 C 0.085 3.915 21 N -0.800 5.800 22 Si 0.904 3.096 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.104 4.104 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.288 0.712 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -6.282 -16.446 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 H 0.124 0.876 4 C -0.592 4.592 5 S 1.421 4.579 6 C -0.653 4.653 7 O -0.817 6.817 8 N -0.842 5.842 9 C -0.060 4.060 10 S 2.764 3.236 11 O -0.948 6.948 12 O -0.943 6.943 13 C -0.715 4.715 14 C -0.177 4.177 15 C -0.111 4.111 16 C -0.217 4.217 17 C 0.070 3.930 18 C -0.472 4.472 19 H 0.114 0.886 20 C -0.135 4.135 21 N -0.424 5.424 22 Si 0.730 3.270 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.125 4.125 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.141 0.859 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.259 -5.944 -15.575 16.987 hybrid contribution -1.586 1.918 -1.199 2.763 sum 1.673 -4.026 -16.775 17.332 Atomic orbital electron populations 1.22146 0.93923 1.02873 1.02865 1.20376 0.95479 0.96257 0.81778 0.87619 1.28001 1.21019 1.07475 1.02733 1.71079 0.87191 0.98587 1.01009 1.27738 1.08478 1.10956 1.18159 1.93249 1.72480 1.34824 1.81136 1.57850 1.70301 1.21313 1.34735 1.21558 1.01461 0.79981 1.02968 1.02540 0.74143 0.73505 0.73406 1.93555 1.68067 1.59742 1.73485 1.93631 1.73472 1.54861 1.72294 1.30005 1.20818 1.06508 1.14209 1.20068 1.02634 0.94042 1.00977 1.20708 0.97518 0.98196 0.94727 1.21316 1.04403 0.97672 0.98299 1.17788 0.89985 0.91686 0.93563 1.19505 1.38013 0.96669 0.92974 0.88628 1.26145 0.91441 1.00563 0.95388 1.69674 1.26510 1.39668 1.06524 0.86401 0.81608 0.81365 0.77595 1.19443 1.21276 1.16607 1.20840 0.97910 0.99614 0.94182 0.91848 0.91649 0.91025 0.85898 0.88535 0.90370 0.87770 0.87117 0.91866 0.90246 0.90668 0.87111 0.87926 0.87616 0.90175 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.17 37.16 0.34 -1.24 16 2 C 0.17 1.97 2.68 -67.93 -0.18 1.79 16 3 H 0.11 1.49 6.91 -51.93 -0.36 1.13 16 4 C -0.45 -4.00 5.29 37.15 0.20 -3.81 16 5 S 1.22 13.24 13.38 -107.50 -1.44 11.80 16 6 C -0.50 -3.74 10.74 101.05 1.09 -2.65 16 7 O -0.82 -14.62 18.14 -35.23 -0.64 -15.26 16 8 N -1.00 -12.89 2.61 -114.61 -0.30 -13.19 16 9 C 0.09 0.81 9.35 59.85 0.56 1.37 16 10 S 2.67 47.44 5.64 -107.50 -0.61 46.83 16 11 O -0.96 -18.25 16.34 -57.17 -0.93 -19.18 16 12 O -0.95 -19.11 15.82 -57.17 -0.90 -20.02 16 13 C -0.62 -12.82 5.97 -39.66 -0.24 -13.05 16 14 C -0.16 -3.20 9.53 -39.29 -0.37 -3.57 16 15 C -0.09 -1.93 10.02 -39.66 -0.40 -2.32 16 16 C -0.20 -4.55 7.18 -38.87 -0.28 -4.82 16 17 C 0.07 1.79 5.10 -106.82 -0.55 1.25 16 18 C -0.44 -11.40 9.57 -37.74 -0.36 -11.76 16 19 H 0.10 2.53 8.06 -52.49 -0.42 2.10 16 20 C 0.08 2.13 5.40 -17.34 -0.09 2.03 16 21 N -0.80 -20.41 13.93 55.55 0.77 -19.63 16 22 Si 0.90 20.03 24.52 -169.99 -4.17 15.86 16 23 H -0.27 -5.70 6.71 56.52 0.38 -5.32 16 24 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.24 -5.59 6.86 56.52 0.39 -5.20 16 26 C -0.10 -2.33 9.26 -38.87 -0.36 -2.69 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.53 6.66 -51.93 -0.35 0.19 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.12 0.66 7.67 -51.93 -0.40 0.26 16 31 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 37 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 38 H 0.11 2.07 7.59 -52.49 -0.40 1.67 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.11 2.39 4.73 -52.48 -0.25 2.15 16 41 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 42 H 0.12 2.51 7.60 -52.49 -0.40 2.11 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -34.34 367.12 -9.19 -43.53 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.86 Total: 3.23 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: -0.65 Total: -39.50 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.47 Total: -32.82 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -2.48 Total: -54.47 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.17 Total: 15.86 kcal Atomic # 16 Polarization: 60.68 SS G_CDS: -2.04 Total: 58.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.34 -9.19 -43.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619496091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.610 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds