Wall clock time and date at job start Wed Apr 1 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46516 * 2 1 4 4 C 1.52991 * 109.46925 * 240.00038 * 2 1 3 5 5 S 1.81405 * 109.47106 * 179.97438 * 4 2 1 6 6 C 1.81403 * 102.99998 * 179.97438 * 5 4 2 7 7 O 1.42098 * 109.47028 * 296.38597 * 5 4 2 8 8 N 1.46498 * 109.47453 * 119.99638 * 2 1 3 9 9 C 1.46503 * 119.99725 * 60.00102 * 8 2 1 10 10 S 1.65597 * 120.00117 * 240.00396 * 8 2 1 11 11 O 1.42101 * 106.40084 * 203.53776 * 10 8 2 12 12 O 1.42098 * 106.40300 * 336.45581 * 10 8 2 13 13 C 1.76199 * 107.22113 * 89.99819 * 10 8 2 14 14 C 1.38653 * 119.87683 * 269.72934 * 13 10 8 15 15 C 1.38610 * 120.50326 * 179.72353 * 14 13 10 16 16 C 1.37649 * 120.24566 * 0.54585 * 15 14 13 17 17 C 1.40689 * 119.74188 * 359.72946 * 16 15 14 18 18 C 1.41404 * 120.24236 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99936 * 150.22135 * 18 17 16 20 20 C 1.39939 * 119.99643 * 330.21727 * 18 17 16 21 21 N 1.30830 * 119.99861 * 161.72872 * 20 18 17 22 22 Si 1.86802 * 120.00259 * 341.72842 * 20 18 17 23 23 H 1.48500 * 109.46909 * 95.41146 * 22 20 18 24 24 H 1.48500 * 109.46863 * 215.40868 * 22 20 18 25 25 H 1.48496 * 109.46985 * 335.41151 * 22 20 18 26 26 C 1.37599 * 119.87255 * 89.99870 * 13 10 8 27 27 H 1.08996 * 109.47456 * 59.99837 * 1 2 3 28 28 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46971 * 299.99711 * 1 2 3 30 30 H 1.08996 * 109.47440 * 299.99389 * 4 2 1 31 31 H 1.09000 * 109.47602 * 59.99503 * 4 2 1 32 32 H 1.08992 * 109.47001 * 60.00114 * 6 5 4 33 33 H 1.09000 * 109.46751 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.46845 * 299.99675 * 6 5 4 35 35 H 1.08996 * 109.47336 * 89.99879 * 9 8 2 36 36 H 1.09003 * 109.46818 * 210.00021 * 9 8 2 37 37 H 1.08999 * 109.47183 * 330.00097 * 9 8 2 38 38 H 1.08000 * 119.74797 * 359.97438 * 14 13 10 39 39 H 1.07993 * 119.87751 * 180.25561 * 15 14 13 40 40 H 1.08004 * 120.12363 * 179.74977 * 16 15 14 41 41 H 0.96992 * 120.00158 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.13190 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 -1.2492 5 16 3.8540 -0.7206 -1.2496 6 6 4.2620 -1.6051 -2.7799 7 8 4.3271 0.6166 -1.3344 8 7 2.0184 -0.6905 1.1962 9 6 1.6645 -2.0931 1.4280 10 16 2.9704 0.1144 2.2862 11 8 3.7119 -0.8787 2.9814 12 8 3.5794 1.1831 1.5748 13 6 1.8961 0.8537 3.4710 14 6 1.4158 2.1374 3.2616 15 6 0.5654 2.7294 4.1823 16 6 0.1973 2.0512 5.3222 17 6 0.6832 0.7503 5.5479 18 6 0.3115 0.0437 6.7150 19 1 0.2512 -1.0344 6.6974 20 6 0.0218 0.7416 7.8929 21 7 -0.6530 0.1580 8.8499 22 14 0.5985 2.5064 8.0989 23 1 -0.4952 3.4330 7.7108 24 1 0.9685 2.7438 9.5173 25 1 1.7805 2.7452 7.2323 26 6 1.5415 0.1570 4.6034 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6766 -0.2075 -2.1392 32 1 3.8427 -1.0698 -3.6318 33 1 5.3451 -1.6658 -2.8867 34 1 3.8435 -2.6108 -2.7409 35 1 2.4158 -2.7376 0.9717 36 1 1.6239 -2.2851 2.5003 37 1 0.6905 -2.3002 0.9847 38 1 1.7031 2.6787 2.3723 39 1 0.1940 3.7281 4.0070 40 1 -0.4622 2.5159 6.0403 41 1 -0.8541 0.6418 9.6661 42 1 1.9199 -0.8412 4.7665 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619496091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:40 Heat of formation + Delta-G solvation = -109.677844 kcal Electronic energy + Delta-G solvation = -26863.899638 eV Core-core repulsion = 23061.846230 eV Total energy + Delta-G solvation = -3802.053408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.69062 -38.61710 -38.25020 -36.90627 -36.68343 -35.64089 -32.60668 -32.54260 -31.89898 -29.82430 -28.21971 -27.33306 -27.15498 -24.09429 -22.71088 -22.19585 -20.29713 -19.52206 -18.73119 -18.40587 -18.09518 -17.20799 -17.13902 -16.60685 -16.30529 -16.02519 -15.95365 -15.50985 -15.04398 -14.86249 -14.69450 -14.68301 -14.36818 -14.04436 -13.76573 -13.64732 -13.50423 -13.46859 -13.37381 -13.24060 -13.06958 -13.02326 -12.88489 -12.81385 -12.56638 -12.53986 -12.27793 -12.05851 -11.81757 -11.75986 -11.54891 -11.10687 -11.01703 -10.11694 -9.94475 -9.70043 -9.13393 -8.97463 -6.58871 -0.59240 0.17789 0.60111 0.63192 1.20244 1.34686 1.41894 1.78965 1.96552 2.05341 2.41322 2.71293 2.91182 3.28345 3.34353 3.67008 4.01343 4.04588 4.15714 4.30350 4.30762 4.35718 4.41636 4.51012 4.59930 4.73224 4.80734 4.83162 4.89342 4.92232 4.94502 5.06444 5.13368 5.18038 5.25320 5.32384 5.42800 5.45964 5.61906 5.69467 5.75740 5.97419 6.24227 6.57149 6.70467 8.10286 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.003327 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.950437 B = 8414.059817 C = 8503.699988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.075 0.925 4 C -0.437 4.437 5 S 1.207 4.793 6 C -0.478 4.478 7 O -0.907 6.907 8 N -0.991 5.991 9 C 0.065 3.935 10 S 2.686 3.314 11 O -0.974 6.974 12 O -0.976 6.976 13 C -0.634 4.634 14 C -0.149 4.149 15 C -0.096 4.096 16 C -0.208 4.208 17 C 0.057 3.943 18 C -0.478 4.478 19 H 0.069 0.931 20 C 0.053 3.947 21 N -0.837 5.837 22 Si 0.950 3.050 23 H -0.250 1.250 24 H -0.273 1.273 25 H -0.259 1.259 26 C -0.118 4.118 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.171 0.829 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.109 0.891 41 H 0.296 0.704 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 -6.998 -19.391 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.094 0.906 4 C -0.577 4.577 5 S 1.409 4.591 6 C -0.637 4.637 7 O -0.902 6.902 8 N -0.832 5.832 9 C -0.078 4.078 10 S 2.779 3.221 11 O -0.964 6.964 12 O -0.966 6.966 13 C -0.722 4.722 14 C -0.169 4.169 15 C -0.115 4.115 16 C -0.227 4.227 17 C 0.053 3.947 18 C -0.507 4.507 19 H 0.087 0.913 20 C -0.163 4.163 21 N -0.463 5.463 22 Si 0.773 3.227 23 H -0.175 1.175 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.139 4.139 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.189 0.811 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.171 0.829 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.585 -6.627 -18.467 19.789 hybrid contribution -1.372 2.004 -0.613 2.505 sum 1.213 -4.623 -19.080 19.669 Atomic orbital electron populations 1.22148 0.92219 1.04535 1.02613 1.20544 0.96707 0.95249 0.82187 0.90636 1.27847 1.18262 1.10164 1.01448 1.69988 0.88647 0.96872 1.03575 1.27556 1.09050 1.12095 1.14998 1.93162 1.75220 1.37840 1.84016 1.57521 1.69915 1.22279 1.33504 1.22046 1.04662 0.78116 1.02954 1.01960 0.74030 0.73020 0.73064 1.93525 1.68792 1.59737 1.74371 1.93609 1.74260 1.56388 1.72320 1.30581 1.20323 1.06751 1.14551 1.20495 1.01286 0.93953 1.01203 1.21110 0.97039 0.99637 0.93685 1.21483 1.04589 0.97350 0.99279 1.17954 0.90581 0.92585 0.93562 1.19490 1.40982 0.95694 0.94563 0.91290 1.26703 0.91269 1.03446 0.94890 1.69689 1.28029 1.41189 1.07372 0.85716 0.80923 0.78227 0.77836 1.17523 1.19901 1.18333 1.20929 0.98152 1.00101 0.94673 0.90253 0.89017 0.93212 0.81100 0.87322 0.90628 0.87511 0.82916 0.88060 0.91800 0.87366 0.85183 0.84394 0.87363 0.89297 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.17 71.98 0.66 -1.92 16 2 C 0.16 3.33 2.68 44.99 0.12 3.46 16 3 H 0.08 2.07 6.91 -2.38 -0.02 2.06 16 4 C -0.44 -5.97 5.29 71.98 0.38 -5.58 16 5 S 1.21 23.79 13.38 -56.49 -0.76 23.03 16 6 C -0.48 -5.40 10.74 113.37 1.22 -4.19 16 7 O -0.91 -32.80 18.14 -148.98 -2.70 -35.50 16 8 N -0.99 -23.38 2.61 -516.52 -1.35 -24.73 16 9 C 0.07 1.02 9.35 127.77 1.19 2.21 16 10 S 2.69 94.47 5.64 -56.49 -0.32 94.16 16 11 O -0.97 -37.03 16.34 -128.00 -2.09 -39.12 16 12 O -0.98 -39.38 15.82 -128.00 -2.03 -41.41 16 13 C -0.63 -25.97 5.97 22.22 0.13 -25.83 16 14 C -0.15 -5.94 9.53 22.46 0.21 -5.72 16 15 C -0.10 -3.86 10.02 22.22 0.22 -3.64 16 16 C -0.21 -9.51 7.18 22.73 0.16 -9.34 16 17 C 0.06 2.82 5.10 -21.29 -0.11 2.71 16 18 C -0.48 -25.78 9.57 23.46 0.22 -25.56 16 19 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 20 C 0.05 2.75 5.40 85.25 0.46 3.21 16 21 N -0.84 -44.09 13.93 21.83 0.30 -43.79 16 22 Si 0.95 41.40 24.52 68.60 1.68 43.09 16 23 H -0.25 -10.08 6.71 99.48 0.67 -9.41 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.26 -11.87 6.86 99.48 0.68 -11.18 16 26 C -0.12 -5.38 9.26 22.73 0.21 -5.17 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.03 6.66 -2.39 -0.02 1.02 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.17 0.68 7.67 -2.39 -0.02 0.66 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.15 0.45 8.14 -2.39 -0.02 0.44 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.24 7.79 -2.39 -0.02 1.22 16 37 H 0.11 0.99 6.43 -2.39 -0.02 0.97 16 38 H 0.13 4.67 7.59 -2.91 -0.02 4.65 16 39 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.11 4.84 4.73 -2.91 -0.01 4.83 16 41 H 0.30 13.98 8.30 -92.71 -0.77 13.21 16 42 H 0.12 5.34 7.60 -2.91 -0.02 5.32 16 Total: -1.00 -80.35 367.12 -1.20 -81.55 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.96 Total: 18.08 kcal Atomic # 6 Polarization: -80.46 SS G_CDS: 5.09 Total: -75.36 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -1.04 Total: -68.51 kcal Atomic # 8 Polarization: -109.21 SS G_CDS: -6.82 Total: -116.03 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.68 Total: 43.09 kcal Atomic # 16 Polarization: 118.26 SS G_CDS: -1.07 Total: 117.19 kcal Total: -80.35 -1.20 -81.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619496091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.133 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds