Wall clock time and date at job start Wed Apr 1 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46618 * 2 1 4 4 C 1.52994 * 109.47167 * 119.99694 * 2 1 3 5 5 S 1.81398 * 109.47286 * 185.00158 * 4 2 1 6 6 C 1.81399 * 103.00250 * 180.02562 * 5 4 2 7 7 O 1.42101 * 109.47052 * 63.61300 * 5 4 2 8 8 N 1.46502 * 109.46989 * 240.00035 * 2 1 3 9 9 C 1.46504 * 119.99674 * 299.99453 * 8 2 1 10 10 S 1.65598 * 119.99788 * 120.00174 * 8 2 1 11 11 O 1.42097 * 106.39929 * 156.45935 * 10 8 2 12 12 O 1.42094 * 106.40600 * 23.53406 * 10 8 2 13 13 C 1.76201 * 107.21589 * 269.99603 * 10 8 2 14 14 C 1.38660 * 119.87700 * 269.98079 * 13 10 8 15 15 C 1.38608 * 120.50513 * 180.02562 * 14 13 10 16 16 C 1.37644 * 120.24552 * 359.97438 * 15 14 13 17 17 C 1.40690 * 119.74496 * 0.02562 * 16 15 14 18 18 C 1.41400 * 120.24647 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99989 * 155.24781 * 18 17 16 20 20 C 1.39947 * 119.99773 * 335.25483 * 18 17 16 21 21 N 1.30819 * 119.99909 * 342.23770 * 20 18 17 22 22 Si 1.86796 * 119.99953 * 162.24445 * 20 18 17 23 23 H 1.48507 * 109.47312 * 89.99517 * 22 20 18 24 24 H 1.48499 * 109.47147 * 209.99961 * 22 20 18 25 25 H 1.48507 * 109.47287 * 329.99532 * 22 20 18 26 26 C 1.37595 * 119.87668 * 90.00221 * 13 10 8 27 27 H 1.09000 * 109.47053 * 300.00159 * 1 2 3 28 28 H 1.08997 * 109.47409 * 60.00286 * 1 2 3 29 29 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47707 * 305.00369 * 4 2 1 31 31 H 1.09010 * 109.47129 * 65.00071 * 4 2 1 32 32 H 1.09003 * 109.47356 * 59.99743 * 6 5 4 33 33 H 1.08998 * 109.47326 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47215 * 299.99773 * 6 5 4 35 35 H 1.08998 * 109.47039 * 270.00057 * 9 8 2 36 36 H 1.08996 * 109.47105 * 30.00500 * 9 8 2 37 37 H 1.09001 * 109.46219 * 150.00160 * 9 8 2 38 38 H 1.08002 * 119.74767 * 359.97438 * 14 13 10 39 39 H 1.07999 * 119.87876 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.12501 * 180.02562 * 16 15 14 41 41 H 0.97004 * 119.99812 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.12602 * 0.25230 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 16 3.8479 -0.5931 1.3257 6 6 4.2568 -1.4928 2.8469 7 8 4.2206 0.7709 1.4668 8 7 2.0184 -0.6906 -1.1962 9 6 1.6645 -2.0933 -1.4279 10 16 2.9704 0.1142 -2.2862 11 8 3.7118 -0.8789 -2.9814 12 8 3.5794 1.1830 -1.5749 13 6 1.8961 0.8535 -3.4710 14 6 1.5390 0.1516 -4.6123 15 6 0.6951 0.7208 -5.5532 16 6 0.2015 1.9916 -5.3631 17 6 0.5570 2.7131 -4.2088 18 6 0.0557 4.0190 -4.0025 19 1 -0.0213 4.4160 -3.0011 20 6 -0.3409 4.7971 -5.0961 21 7 0.0593 4.4834 -6.3014 22 14 -1.4416 6.2835 -4.8346 23 1 -0.6022 7.4859 -4.6002 24 1 -2.2831 6.4945 -6.0399 25 1 -2.3147 6.0518 -3.6558 26 6 1.4149 2.1253 -3.2605 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 3.9130 -2.5237 2.7629 33 1 5.3363 -1.4812 2.9968 34 1 3.7667 -1.0143 3.6949 35 1 2.4158 -2.7377 -0.9716 36 1 0.6905 -2.3002 -0.9845 37 1 1.6238 -2.2852 -2.5001 38 1 1.9219 -0.8458 -4.7698 39 1 0.4238 0.1652 -6.4387 40 1 -0.4562 2.4330 -6.0972 41 1 -0.2153 5.0230 -7.0594 42 1 1.6978 2.6719 -2.3730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619496092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:44 Heat of formation + Delta-G solvation = -86.101169 kcal Electronic energy + Delta-G solvation = -26825.932875 eV Core-core repulsion = 23024.901829 eV Total energy + Delta-G solvation = -3801.031046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -37.64708 -37.52535 -36.71069 -35.58891 -35.29881 -33.84088 -31.64479 -30.07343 -29.79390 -29.13571 -27.38305 -26.35764 -25.47697 -21.93041 -21.11081 -20.95367 -18.70672 -18.03941 -17.55345 -17.16889 -16.01548 -15.98945 -15.35055 -15.30499 -15.02337 -14.65005 -14.58307 -14.12411 -13.87404 -13.50681 -13.33635 -13.31176 -13.00720 -12.75696 -12.58487 -12.52318 -12.29648 -12.03584 -11.91266 -11.64857 -11.56820 -11.55632 -11.39539 -11.33461 -11.13062 -11.04901 -10.87264 -10.81227 -10.60546 -10.13318 -9.78938 -9.64338 -9.33923 -8.93268 -8.22957 -8.02818 -7.69806 -6.91986 -4.52959 0.92872 1.44052 2.19843 2.57483 2.63762 3.00200 3.02097 3.08377 3.38947 3.78569 3.83400 4.22755 4.40689 4.63185 4.72488 4.94139 4.94880 5.02925 5.08217 5.28143 5.40277 5.41941 5.56745 5.60739 5.70926 5.71522 5.75084 5.89140 6.04059 6.16994 6.20474 6.31311 6.62904 6.66727 6.76783 6.91892 7.04910 7.22271 7.38715 7.72382 7.80876 7.94674 8.40442 8.67340 8.72190 10.03721 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.003558 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.169957 B = 7867.159498 C = 8544.683756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.167 3.833 3 H 0.107 0.893 4 C -0.454 4.454 5 S 1.226 4.774 6 C -0.497 4.497 7 O -0.821 6.821 8 N -1.004 6.004 9 C 0.088 3.912 10 S 2.668 3.332 11 O -0.966 6.966 12 O -0.954 6.954 13 C -0.630 4.630 14 C -0.148 4.148 15 C -0.121 4.121 16 C -0.118 4.118 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.793 5.793 22 Si 0.911 3.089 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.126 4.126 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.284 0.716 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -14.342 10.699 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.060 3.940 3 H 0.125 0.875 4 C -0.593 4.593 5 S 1.423 4.577 6 C -0.654 4.654 7 O -0.817 6.817 8 N -0.841 5.841 9 C -0.057 4.057 10 S 2.766 3.234 11 O -0.956 6.956 12 O -0.944 6.944 13 C -0.722 4.722 14 C -0.170 4.170 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.089 3.911 18 C -0.490 4.490 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.418 5.418 22 Si 0.735 3.265 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.147 4.147 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.378 -13.784 9.906 17.030 hybrid contribution -2.202 1.757 1.429 3.159 sum -0.823 -12.027 11.335 16.547 Atomic orbital electron populations 1.22142 0.93936 1.02598 1.03091 1.20383 0.95520 0.96350 0.81727 0.87470 1.28014 1.20907 1.07525 1.02831 1.71035 0.88688 0.96675 1.01313 1.27750 1.08321 1.11173 1.18172 1.93247 1.75306 1.31622 1.81489 1.57843 1.70297 1.21111 1.34884 1.21491 1.01291 0.80326 1.02555 1.02450 0.74218 0.73317 0.73439 1.93517 1.68452 1.60048 1.73624 1.93629 1.73661 1.54732 1.72418 1.29774 1.21512 1.06780 1.14139 1.20072 1.02996 0.98925 0.94962 1.20808 0.99084 0.96218 0.97900 1.21631 1.00243 0.92555 0.99398 1.17669 0.89324 0.92950 0.91140 1.19601 1.36906 0.98043 0.94441 0.89979 1.25932 0.94515 0.99340 0.94517 1.69781 1.34502 1.37374 1.00162 0.86264 0.80329 0.80767 0.79166 1.19288 1.19994 1.18344 1.20756 0.98921 0.93472 1.01574 0.91834 0.90866 0.91863 0.88510 0.85957 0.87187 0.87813 0.90374 0.92081 0.90852 0.90585 0.87607 0.88376 0.85807 0.90544 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.17 37.16 0.34 -1.44 16 2 C 0.17 2.17 2.63 -67.93 -0.18 1.99 16 3 H 0.11 1.70 6.91 -51.93 -0.36 1.34 16 4 C -0.45 -4.42 5.34 37.15 0.20 -4.22 16 5 S 1.23 14.24 13.53 -107.50 -1.45 12.79 16 6 C -0.50 -4.03 10.74 101.05 1.09 -2.94 16 7 O -0.82 -15.44 18.14 -35.23 -0.64 -16.08 16 8 N -1.00 -13.60 2.78 -114.61 -0.32 -13.92 16 9 C 0.09 0.85 9.25 59.85 0.55 1.40 16 10 S 2.67 49.78 5.64 -107.50 -0.61 49.17 16 11 O -0.97 -18.61 16.34 -57.17 -0.93 -19.55 16 12 O -0.95 -20.57 15.83 -57.17 -0.90 -21.48 16 13 C -0.63 -13.70 5.97 -39.66 -0.24 -13.94 16 14 C -0.15 -3.16 9.53 -39.29 -0.37 -3.54 16 15 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 16 C -0.12 -2.93 8.70 -38.87 -0.34 -3.26 16 17 C 0.09 2.39 5.57 -106.82 -0.60 1.79 16 18 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 16 19 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 20 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 21 N -0.79 -19.86 10.97 55.55 0.61 -19.25 16 22 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 C -0.13 -3.03 9.26 -38.87 -0.36 -3.39 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.57 6.66 -51.93 -0.35 0.22 16 30 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 31 H 0.12 0.74 7.51 -51.92 -0.39 0.35 16 32 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 37 H 0.08 0.77 7.79 -51.93 -0.40 0.37 16 38 H 0.11 1.99 7.60 -52.49 -0.40 1.59 16 39 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.11 6.18 -52.49 -0.32 2.79 16 41 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 42 H 0.11 2.60 7.60 -52.49 -0.40 2.20 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -34.73 372.44 -10.28 -45.01 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.89 Total: 5.65 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: -0.73 Total: -41.08 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.29 Total: -33.17 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -2.48 Total: -57.10 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 64.02 SS G_CDS: -2.06 Total: 61.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.73 -10.28 -45.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619496092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.088 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds