Wall clock time and date at job start Wed Apr 1 2020 02:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46618 * 2 1 4 4 C 1.52994 * 109.47167 * 119.99694 * 2 1 3 5 5 S 1.81398 * 109.47286 * 185.00158 * 4 2 1 6 6 C 1.81399 * 103.00250 * 180.02562 * 5 4 2 7 7 O 1.42101 * 109.47052 * 63.61300 * 5 4 2 8 8 N 1.46502 * 109.46989 * 240.00035 * 2 1 3 9 9 C 1.46504 * 119.99674 * 299.99453 * 8 2 1 10 10 S 1.65598 * 119.99788 * 120.00174 * 8 2 1 11 11 O 1.42097 * 106.39929 * 156.45935 * 10 8 2 12 12 O 1.42094 * 106.40600 * 23.53406 * 10 8 2 13 13 C 1.76201 * 107.21589 * 269.99603 * 10 8 2 14 14 C 1.38660 * 119.87700 * 269.98079 * 13 10 8 15 15 C 1.38608 * 120.50513 * 180.02562 * 14 13 10 16 16 C 1.37644 * 120.24552 * 359.97438 * 15 14 13 17 17 C 1.40690 * 119.74496 * 0.02562 * 16 15 14 18 18 C 1.41400 * 120.24647 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99989 * 155.24781 * 18 17 16 20 20 C 1.39947 * 119.99773 * 335.25483 * 18 17 16 21 21 N 1.30819 * 119.99909 * 342.23770 * 20 18 17 22 22 Si 1.86796 * 119.99953 * 162.24445 * 20 18 17 23 23 H 1.48507 * 109.47312 * 89.99517 * 22 20 18 24 24 H 1.48499 * 109.47147 * 209.99961 * 22 20 18 25 25 H 1.48507 * 109.47287 * 329.99532 * 22 20 18 26 26 C 1.37595 * 119.87668 * 90.00221 * 13 10 8 27 27 H 1.09000 * 109.47053 * 300.00159 * 1 2 3 28 28 H 1.08997 * 109.47409 * 60.00286 * 1 2 3 29 29 H 1.08999 * 109.46920 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47707 * 305.00369 * 4 2 1 31 31 H 1.09010 * 109.47129 * 65.00071 * 4 2 1 32 32 H 1.09003 * 109.47356 * 59.99743 * 6 5 4 33 33 H 1.08998 * 109.47326 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47215 * 299.99773 * 6 5 4 35 35 H 1.08998 * 109.47039 * 270.00057 * 9 8 2 36 36 H 1.08996 * 109.47105 * 30.00500 * 9 8 2 37 37 H 1.09001 * 109.46219 * 150.00160 * 9 8 2 38 38 H 1.08002 * 119.74767 * 359.97438 * 14 13 10 39 39 H 1.07999 * 119.87876 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.12501 * 180.02562 * 16 15 14 41 41 H 0.97004 * 119.99812 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.12602 * 0.25230 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 16 3.8479 -0.5931 1.3257 6 6 4.2568 -1.4928 2.8469 7 8 4.2206 0.7709 1.4668 8 7 2.0184 -0.6906 -1.1962 9 6 1.6645 -2.0933 -1.4279 10 16 2.9704 0.1142 -2.2862 11 8 3.7118 -0.8789 -2.9814 12 8 3.5794 1.1830 -1.5749 13 6 1.8961 0.8535 -3.4710 14 6 1.5390 0.1516 -4.6123 15 6 0.6951 0.7208 -5.5532 16 6 0.2015 1.9916 -5.3631 17 6 0.5570 2.7131 -4.2088 18 6 0.0557 4.0190 -4.0025 19 1 -0.0213 4.4160 -3.0011 20 6 -0.3409 4.7971 -5.0961 21 7 0.0593 4.4834 -6.3014 22 14 -1.4416 6.2835 -4.8346 23 1 -0.6022 7.4859 -4.6002 24 1 -2.2831 6.4945 -6.0399 25 1 -2.3147 6.0518 -3.6558 26 6 1.4149 2.1253 -3.2605 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 3.9130 -2.5237 2.7629 33 1 5.3363 -1.4812 2.9968 34 1 3.7667 -1.0143 3.6949 35 1 2.4158 -2.7377 -0.9716 36 1 0.6905 -2.3002 -0.9845 37 1 1.6238 -2.2852 -2.5001 38 1 1.9219 -0.8458 -4.7698 39 1 0.4238 0.1652 -6.4387 40 1 -0.4562 2.4330 -6.0972 41 1 -0.2153 5.0230 -7.0594 42 1 1.6978 2.6719 -2.3730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619496092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:43 Heat of formation + Delta-G solvation = -112.206952 kcal Electronic energy + Delta-G solvation = -26827.064907 eV Core-core repulsion = 23024.901829 eV Total energy + Delta-G solvation = -3802.163078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.44797 -38.59758 -38.22342 -36.87492 -36.71019 -35.68178 -32.60062 -31.92017 -31.58810 -29.83221 -28.23430 -27.38330 -27.19825 -23.66725 -22.80744 -22.18941 -20.20322 -19.48560 -18.72646 -18.38999 -17.77454 -17.19606 -16.91670 -16.55540 -16.29517 -15.97579 -15.90007 -15.25024 -15.11295 -14.98822 -14.71236 -14.35138 -14.31279 -13.80419 -13.72325 -13.53932 -13.46407 -13.28241 -13.24905 -13.07343 -13.03387 -12.98965 -12.87470 -12.82053 -12.58862 -12.56106 -12.26299 -12.20668 -11.82317 -11.57503 -11.35890 -11.15640 -11.05905 -10.03877 -9.81614 -9.56457 -9.15089 -8.74976 -6.47244 -0.52838 0.41043 0.59530 0.83642 1.34472 1.42149 1.49686 1.78551 2.04934 2.15997 2.54680 2.75615 2.91191 3.38370 3.50117 3.67211 4.00945 4.04559 4.28577 4.30258 4.34549 4.44964 4.50752 4.58786 4.81116 4.83293 4.86637 4.89118 4.92819 4.95383 5.05964 5.12842 5.17749 5.19654 5.25676 5.40474 5.43174 5.56345 5.72502 5.87976 5.92511 6.10590 6.51212 6.77947 6.83725 8.23407 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.003558 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.169957 B = 7867.159498 C = 8544.683756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.064 0.936 4 C -0.436 4.436 5 S 1.209 4.791 6 C -0.477 4.477 7 O -0.912 6.912 8 N -0.990 5.990 9 C 0.066 3.934 10 S 2.690 3.310 11 O -0.969 6.969 12 O -0.989 6.989 13 C -0.640 4.640 14 C -0.144 4.144 15 C -0.122 4.122 16 C -0.140 4.140 17 C 0.064 3.936 18 C -0.502 4.502 19 H 0.075 0.925 20 C 0.037 3.963 21 N -0.824 5.824 22 Si 0.983 3.017 23 H -0.265 1.265 24 H -0.260 1.260 25 H -0.257 1.257 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.176 0.824 32 H 0.155 0.845 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.292 0.708 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.323 -17.894 11.985 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.082 0.918 4 C -0.576 4.576 5 S 1.411 4.589 6 C -0.636 4.636 7 O -0.907 6.907 8 N -0.831 5.831 9 C -0.077 4.077 10 S 2.784 3.216 11 O -0.959 6.959 12 O -0.979 6.979 13 C -0.729 4.729 14 C -0.165 4.165 15 C -0.141 4.141 16 C -0.160 4.160 17 C 0.061 3.939 18 C -0.531 4.531 19 H 0.093 0.907 20 C -0.178 4.178 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.190 1.190 24 H -0.184 1.184 25 H -0.181 1.181 26 C -0.170 4.170 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.194 0.806 32 H 0.174 0.826 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.239 -17.318 11.127 20.586 hybrid contribution -1.811 2.581 1.148 3.355 sum -1.572 -14.737 12.275 19.244 Atomic orbital electron populations 1.22134 0.92406 1.04613 1.02245 1.20464 0.96624 0.94937 0.82709 0.91775 1.27846 1.18198 1.10368 1.01193 1.69824 0.90137 0.94827 1.04072 1.27552 1.08792 1.12465 1.14801 1.93159 1.78006 1.35109 1.84461 1.57476 1.69877 1.22380 1.33339 1.22066 1.04515 0.77790 1.03317 1.01784 0.74022 0.72740 0.73087 1.93498 1.68689 1.59481 1.74282 1.93594 1.74755 1.56840 1.72743 1.30400 1.20781 1.06073 1.15598 1.20520 1.01854 1.00038 0.94067 1.21182 0.98398 0.95396 0.99083 1.21641 1.01313 0.93874 0.99168 1.18012 0.90080 0.93602 0.92194 1.19837 1.39338 0.99027 0.94879 0.90672 1.26755 0.95203 1.02061 0.93830 1.69817 1.35312 1.38853 1.00973 0.85192 0.78297 0.76705 0.79488 1.19037 1.18423 1.18115 1.20743 1.00016 0.94902 1.01353 0.90772 0.93794 0.88272 0.87474 0.80641 0.82645 0.87428 0.90679 0.88126 0.87567 0.91021 0.84387 0.85144 0.86879 0.89689 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.17 71.98 0.66 -2.53 16 2 C 0.16 3.95 2.63 44.99 0.12 4.07 16 3 H 0.06 2.17 6.91 -2.38 -0.02 2.16 16 4 C -0.44 -7.05 5.34 71.98 0.38 -6.66 16 5 S 1.21 26.61 13.53 -56.49 -0.76 25.84 16 6 C -0.48 -6.00 10.74 113.37 1.22 -4.78 16 7 O -0.91 -36.07 18.14 -148.98 -2.70 -38.77 16 8 N -0.99 -25.03 2.78 -516.51 -1.44 -26.46 16 9 C 0.07 0.97 9.25 127.77 1.18 2.15 16 10 S 2.69 100.79 5.64 -56.49 -0.32 100.47 16 11 O -0.97 -36.08 16.34 -128.00 -2.09 -38.17 16 12 O -0.99 -45.02 15.83 -128.00 -2.03 -47.04 16 13 C -0.64 -28.47 5.97 22.22 0.13 -28.34 16 14 C -0.14 -6.04 9.53 22.46 0.21 -5.83 16 15 C -0.12 -5.35 10.02 22.22 0.22 -5.13 16 16 C -0.14 -7.18 8.70 22.73 0.20 -6.98 16 17 C 0.06 3.51 5.57 -21.29 -0.12 3.39 16 18 C -0.50 -27.48 9.05 23.46 0.21 -27.27 16 19 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 20 C 0.04 1.86 5.14 85.26 0.44 2.30 16 21 N -0.82 -42.70 10.97 21.83 0.24 -42.46 16 22 Si 0.98 38.21 29.59 68.60 2.03 40.24 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 26 C -0.15 -7.65 9.26 22.73 0.21 -7.44 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.31 6.66 -2.39 -0.02 1.30 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.18 0.93 7.51 -2.39 -0.02 0.92 16 32 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.11 0.89 6.43 -2.39 -0.02 0.88 16 37 H 0.07 1.17 7.79 -2.39 -0.02 1.15 16 38 H 0.14 4.83 7.60 -2.91 -0.02 4.81 16 39 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.11 5.93 6.18 -2.91 -0.02 5.92 16 41 H 0.29 13.56 8.30 -92.71 -0.77 12.80 16 42 H 0.10 5.10 7.60 -2.91 -0.02 5.07 16 Total: -1.00 -84.14 372.44 -0.97 -85.12 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.02 Total: 24.29 kcal Atomic # 6 Polarization: -88.13 SS G_CDS: 5.07 Total: -83.06 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -1.20 Total: -68.92 kcal Atomic # 8 Polarization: -117.17 SS G_CDS: -6.82 Total: -123.99 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Atomic # 16 Polarization: 127.39 SS G_CDS: -1.08 Total: 126.31 kcal Total: -84.14 -0.97 -85.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619496092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.089 kcal (2) G-P(sol) polarization free energy of solvation -84.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds