Wall clock time and date at job start Wed Apr 1 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46938 * 2 1 4 4 C 1.52999 * 109.47347 * 239.99360 * 2 1 3 5 5 S 1.81395 * 109.47288 * 179.97438 * 4 2 1 6 6 C 1.81396 * 103.00314 * 180.02562 * 5 4 2 7 7 O 1.42102 * 109.46894 * 63.61456 * 5 4 2 8 8 N 1.46504 * 109.47268 * 119.99548 * 2 1 3 9 9 C 1.46502 * 119.99902 * 59.99712 * 8 2 1 10 10 S 1.65600 * 119.99977 * 240.00372 * 8 2 1 11 11 O 1.42107 * 106.39918 * 203.53509 * 10 8 2 12 12 O 1.42094 * 106.40090 * 336.45432 * 10 8 2 13 13 C 1.76201 * 107.21884 * 89.99922 * 10 8 2 14 14 C 1.38655 * 119.87188 * 269.72444 * 13 10 8 15 15 C 1.38622 * 120.49922 * 179.72233 * 14 13 10 16 16 C 1.37635 * 120.24708 * 0.55357 * 15 14 13 17 17 C 1.40708 * 119.74642 * 359.72518 * 16 15 14 18 18 C 1.41390 * 120.24612 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99761 * 150.21746 * 18 17 16 20 20 C 1.39945 * 119.99897 * 330.21923 * 18 17 16 21 21 N 1.30825 * 119.99705 * 161.72437 * 20 18 17 22 22 Si 1.86796 * 120.00224 * 341.72593 * 20 18 17 23 23 H 1.48498 * 109.46907 * 95.41123 * 22 20 18 24 24 H 1.48496 * 109.47451 * 215.41283 * 22 20 18 25 25 H 1.48502 * 109.47152 * 335.41617 * 22 20 18 26 26 C 1.37600 * 119.87703 * 89.99865 * 13 10 8 27 27 H 1.08998 * 109.47127 * 300.00546 * 1 2 3 28 28 H 1.08996 * 109.46802 * 60.00837 * 1 2 3 29 29 H 1.08999 * 109.46557 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47125 * 300.00053 * 4 2 1 31 31 H 1.09003 * 109.46983 * 59.99956 * 4 2 1 32 32 H 1.09002 * 109.47037 * 59.99940 * 6 5 4 33 33 H 1.08997 * 109.47739 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46961 * 300.00365 * 6 5 4 35 35 H 1.09005 * 109.46650 * 90.00427 * 9 8 2 36 36 H 1.08998 * 109.47375 * 210.00222 * 9 8 2 37 37 H 1.09001 * 109.46960 * 330.00443 * 9 8 2 38 38 H 1.08000 * 119.75304 * 0.02562 * 14 13 10 39 39 H 1.07998 * 119.87924 * 180.25586 * 15 14 13 40 40 H 1.07995 * 120.13239 * 179.74944 * 16 15 14 41 41 H 0.96999 * 119.99700 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.12443 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 16 3.8540 -0.7207 -1.2495 6 6 4.2622 -1.6040 -2.7804 7 8 4.3282 -1.4619 -0.1337 8 7 2.0184 -0.6905 1.1962 9 6 1.6645 -2.0931 1.4282 10 16 2.9704 0.1144 2.2863 11 8 3.7118 -0.8787 2.9816 12 8 3.5794 1.1830 1.5748 13 6 1.8960 0.8537 3.4711 14 6 1.4158 2.1375 3.2615 15 6 0.5653 2.7295 4.1822 16 6 0.1972 2.0515 5.3220 17 6 0.6831 0.7504 5.5480 18 6 0.3113 0.0440 6.7150 19 1 0.2510 -1.0342 6.6974 20 6 0.0216 0.7419 7.8929 21 7 -0.6533 0.1584 8.8497 22 14 0.5983 2.5067 8.0988 23 1 -0.4953 3.4332 7.7107 24 1 0.9683 2.7443 9.5172 25 1 1.7803 2.7455 7.2322 26 6 1.5413 0.1572 4.6035 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.6768 -1.7490 -1.2490 31 1 1.6767 -0.2076 -2.1392 32 1 3.8429 -1.0680 -3.6319 33 1 5.3452 -1.6654 -2.8868 34 1 3.8436 -2.6097 -2.7422 35 1 2.4158 -2.7376 0.9719 36 1 1.6238 -2.2851 2.5004 37 1 0.6905 -2.3001 0.9848 38 1 1.7026 2.6784 2.3718 39 1 0.1939 3.7283 4.0069 40 1 -0.4623 2.5160 6.0401 41 1 -0.8538 0.6420 9.6663 42 1 1.9198 -0.8411 4.7666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619496093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:47 Heat of formation + Delta-G solvation = -83.924368 kcal Electronic energy + Delta-G solvation = -27041.082225 eV Core-core repulsion = 23240.145572 eV Total energy + Delta-G solvation = -3800.936653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -37.91139 -37.56519 -36.67392 -35.64129 -35.23582 -33.77697 -31.60512 -30.71826 -30.14809 -29.16908 -27.44878 -26.30942 -25.36948 -22.36843 -21.15767 -20.86653 -18.78271 -18.11049 -17.51905 -17.23500 -16.33473 -15.98693 -15.61412 -15.15785 -14.89195 -14.78441 -14.69923 -14.33345 -13.88075 -13.70058 -13.33520 -13.16587 -13.00120 -12.87662 -12.84490 -12.43197 -12.26096 -12.21134 -12.10450 -11.82316 -11.75669 -11.67581 -11.49697 -11.36039 -11.18698 -11.03976 -10.87096 -10.77998 -10.33956 -10.15709 -9.98604 -9.74725 -9.30023 -8.85888 -8.28625 -8.25526 -7.87562 -7.08568 -4.63941 0.92653 1.42405 1.93227 2.41727 2.53876 2.99204 3.11857 3.21189 3.36567 3.75681 3.86052 4.22014 4.37982 4.53772 4.75600 4.88031 4.94680 4.97787 5.05295 5.17076 5.28016 5.34237 5.53959 5.65934 5.67957 5.69110 5.79017 5.82246 6.00166 6.04887 6.13225 6.20158 6.28374 6.46061 6.53927 6.79120 6.87631 7.10240 7.20238 7.38859 7.61971 7.78241 8.18259 8.43082 8.61733 9.93415 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024335 B = 0.003379 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.353395 B = 8283.768914 C = 8356.431390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.166 3.834 3 H 0.110 0.890 4 C -0.458 4.458 5 S 1.242 4.758 6 C -0.496 4.496 7 O -0.830 6.830 8 N -0.998 5.998 9 C 0.096 3.904 10 S 2.690 3.310 11 O -0.953 6.953 12 O -0.972 6.972 13 C -0.630 4.630 14 C -0.158 4.158 15 C -0.092 4.092 16 C -0.199 4.199 17 C 0.074 3.926 18 C -0.444 4.444 19 H 0.095 0.905 20 C 0.084 3.916 21 N -0.801 5.801 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.105 4.105 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.288 0.712 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.920 1.982 -21.231 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 H 0.128 0.872 4 C -0.597 4.597 5 S 1.438 4.562 6 C -0.653 4.653 7 O -0.825 6.825 8 N -0.835 5.835 9 C -0.049 4.049 10 S 2.786 3.214 11 O -0.943 6.943 12 O -0.963 6.963 13 C -0.720 4.720 14 C -0.179 4.179 15 C -0.111 4.111 16 C -0.218 4.218 17 C 0.070 3.930 18 C -0.472 4.472 19 H 0.113 0.887 20 C -0.136 4.136 21 N -0.424 5.424 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.126 4.126 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.098 0.902 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.354 2.265 -20.324 20.723 hybrid contribution -1.547 -1.300 0.575 2.101 sum 1.807 0.965 -19.748 19.854 Atomic orbital electron populations 1.22155 0.94064 1.02709 1.02934 1.20416 0.95439 0.96181 0.82067 0.87169 1.28102 1.21385 1.06428 1.03735 1.71098 0.86606 1.13697 0.84754 1.27715 1.08392 1.10602 1.18551 1.93212 1.72778 1.73498 1.43057 1.57644 1.70254 1.20903 1.34650 1.21397 1.00441 0.80627 1.02426 1.01871 0.73600 0.72896 0.73063 1.93539 1.67940 1.59359 1.73479 1.93453 1.73926 1.55848 1.73056 1.30202 1.20846 1.06580 1.14382 1.20051 1.02812 0.93974 1.01017 1.20704 0.97539 0.98168 0.94730 1.21300 1.04512 0.97634 0.98396 1.17789 0.89940 0.91732 0.93523 1.19516 1.37953 0.96675 0.93042 0.88720 1.26158 0.91438 1.00639 0.95356 1.69680 1.26552 1.39681 1.06501 0.86379 0.81595 0.81285 0.77570 1.19393 1.21288 1.16597 1.20851 0.97856 0.99597 0.94250 0.91074 0.91428 0.92168 0.89009 0.85654 0.87265 0.87866 0.90427 0.92278 0.90753 0.91451 0.86987 0.87859 0.87615 0.90187 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.17 37.16 0.34 -1.23 16 2 C 0.17 1.89 2.68 -67.93 -0.18 1.70 16 3 H 0.11 1.16 6.91 -51.93 -0.36 0.80 16 4 C -0.46 -3.81 5.30 37.16 0.20 -3.61 16 5 S 1.24 12.26 13.68 -107.50 -1.47 10.79 16 6 C -0.50 -3.49 10.74 101.05 1.09 -2.40 16 7 O -0.83 -13.93 15.72 -35.23 -0.55 -14.48 16 8 N -1.00 -15.38 1.81 -114.60 -0.21 -15.59 16 9 C 0.10 1.40 9.21 59.85 0.55 1.95 16 10 S 2.69 53.18 5.10 -107.50 -0.55 52.63 16 11 O -0.95 -22.19 16.34 -57.17 -0.93 -23.12 16 12 O -0.97 -18.77 15.82 -57.17 -0.90 -19.68 16 13 C -0.63 -13.57 5.97 -39.66 -0.24 -13.81 16 14 C -0.16 -3.20 9.53 -39.29 -0.37 -3.58 16 15 C -0.09 -1.92 10.02 -39.66 -0.40 -2.32 16 16 C -0.20 -4.65 7.18 -38.87 -0.28 -4.93 16 17 C 0.07 1.87 5.10 -106.82 -0.55 1.32 16 18 C -0.44 -11.84 9.57 -37.74 -0.36 -12.21 16 19 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 20 C 0.08 2.17 5.40 -17.34 -0.09 2.07 16 21 N -0.80 -20.92 13.93 55.55 0.77 -20.15 16 22 Si 0.91 20.36 24.52 -169.99 -4.17 16.19 16 23 H -0.27 -5.72 6.71 56.52 0.38 -5.34 16 24 H -0.29 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.24 -5.66 6.86 56.52 0.39 -5.28 16 26 C -0.10 -2.49 9.26 -38.87 -0.36 -2.85 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 6.66 -51.93 -0.35 0.23 16 30 H 0.09 0.79 7.67 -51.93 -0.40 0.39 16 31 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.11 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.06 0.88 7.47 -51.93 -0.39 0.49 16 36 H 0.07 1.15 7.79 -51.93 -0.40 0.75 16 37 H 0.07 0.77 6.43 -51.93 -0.33 0.43 16 38 H 0.11 1.96 7.59 -52.49 -0.40 1.56 16 39 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.11 2.42 4.73 -52.49 -0.25 2.17 16 41 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 42 H 0.12 2.74 7.60 -52.49 -0.40 2.34 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -34.95 362.86 -9.03 -43.98 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.83 Total: 3.85 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: -0.66 Total: -39.89 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.57 Total: -35.74 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -2.39 Total: -57.28 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.17 Total: 16.19 kcal Atomic # 16 Polarization: 65.44 SS G_CDS: -2.02 Total: 63.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.95 -9.03 -43.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619496093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.943 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds