Wall clock time and date at job start Wed Apr 1 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46938 * 2 1 4 4 C 1.52999 * 109.47347 * 239.99360 * 2 1 3 5 5 S 1.81395 * 109.47288 * 179.97438 * 4 2 1 6 6 C 1.81396 * 103.00314 * 180.02562 * 5 4 2 7 7 O 1.42102 * 109.46894 * 63.61456 * 5 4 2 8 8 N 1.46504 * 109.47268 * 119.99548 * 2 1 3 9 9 C 1.46502 * 119.99902 * 59.99712 * 8 2 1 10 10 S 1.65600 * 119.99977 * 240.00372 * 8 2 1 11 11 O 1.42107 * 106.39918 * 203.53509 * 10 8 2 12 12 O 1.42094 * 106.40090 * 336.45432 * 10 8 2 13 13 C 1.76201 * 107.21884 * 89.99922 * 10 8 2 14 14 C 1.38655 * 119.87188 * 269.72444 * 13 10 8 15 15 C 1.38622 * 120.49922 * 179.72233 * 14 13 10 16 16 C 1.37635 * 120.24708 * 0.55357 * 15 14 13 17 17 C 1.40708 * 119.74642 * 359.72518 * 16 15 14 18 18 C 1.41390 * 120.24612 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99761 * 150.21746 * 18 17 16 20 20 C 1.39945 * 119.99897 * 330.21923 * 18 17 16 21 21 N 1.30825 * 119.99705 * 161.72437 * 20 18 17 22 22 Si 1.86796 * 120.00224 * 341.72593 * 20 18 17 23 23 H 1.48498 * 109.46907 * 95.41123 * 22 20 18 24 24 H 1.48496 * 109.47451 * 215.41283 * 22 20 18 25 25 H 1.48502 * 109.47152 * 335.41617 * 22 20 18 26 26 C 1.37600 * 119.87703 * 89.99865 * 13 10 8 27 27 H 1.08998 * 109.47127 * 300.00546 * 1 2 3 28 28 H 1.08996 * 109.46802 * 60.00837 * 1 2 3 29 29 H 1.08999 * 109.46557 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47125 * 300.00053 * 4 2 1 31 31 H 1.09003 * 109.46983 * 59.99956 * 4 2 1 32 32 H 1.09002 * 109.47037 * 59.99940 * 6 5 4 33 33 H 1.08997 * 109.47739 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46961 * 300.00365 * 6 5 4 35 35 H 1.09005 * 109.46650 * 90.00427 * 9 8 2 36 36 H 1.08998 * 109.47375 * 210.00222 * 9 8 2 37 37 H 1.09001 * 109.46960 * 330.00443 * 9 8 2 38 38 H 1.08000 * 119.75304 * 0.02562 * 14 13 10 39 39 H 1.07998 * 119.87924 * 180.25586 * 15 14 13 40 40 H 1.07995 * 120.13239 * 179.74944 * 16 15 14 41 41 H 0.96999 * 119.99700 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.12443 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 16 3.8540 -0.7207 -1.2495 6 6 4.2622 -1.6040 -2.7804 7 8 4.3282 -1.4619 -0.1337 8 7 2.0184 -0.6905 1.1962 9 6 1.6645 -2.0931 1.4282 10 16 2.9704 0.1144 2.2863 11 8 3.7118 -0.8787 2.9816 12 8 3.5794 1.1830 1.5748 13 6 1.8960 0.8537 3.4711 14 6 1.4158 2.1375 3.2615 15 6 0.5653 2.7295 4.1822 16 6 0.1972 2.0515 5.3220 17 6 0.6831 0.7504 5.5480 18 6 0.3113 0.0440 6.7150 19 1 0.2510 -1.0342 6.6974 20 6 0.0216 0.7419 7.8929 21 7 -0.6533 0.1584 8.8497 22 14 0.5983 2.5067 8.0988 23 1 -0.4953 3.4332 7.7107 24 1 0.9683 2.7443 9.5172 25 1 1.7803 2.7455 7.2322 26 6 1.5413 0.1572 4.6035 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.6768 -1.7490 -1.2490 31 1 1.6767 -0.2076 -2.1392 32 1 3.8429 -1.0680 -3.6319 33 1 5.3452 -1.6654 -2.8868 34 1 3.8436 -2.6097 -2.7422 35 1 2.4158 -2.7376 0.9719 36 1 1.6238 -2.2851 2.5004 37 1 0.6905 -2.3001 0.9848 38 1 1.7026 2.6784 2.3718 39 1 0.1939 3.7283 4.0069 40 1 -0.4623 2.5160 6.0401 41 1 -0.8538 0.6420 9.6663 42 1 1.9198 -0.8411 4.7666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619496093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:46 Heat of formation + Delta-G solvation = -110.684950 kcal Electronic energy + Delta-G solvation = -27042.242651 eV Core-core repulsion = 23240.145572 eV Total energy + Delta-G solvation = -3802.097079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.70934 -38.63778 -38.25085 -36.88444 -36.60034 -35.66596 -32.60544 -32.56744 -31.90267 -29.77504 -28.15657 -27.49941 -27.23499 -24.11242 -22.71981 -22.13964 -20.34405 -19.58542 -18.74214 -18.34621 -18.10770 -17.21009 -17.18049 -16.61955 -16.26608 -15.97894 -15.76937 -15.55775 -15.25272 -14.87618 -14.73952 -14.70608 -14.21394 -14.05450 -13.81392 -13.67845 -13.56521 -13.51515 -13.39708 -13.21340 -13.07503 -13.01140 -12.91801 -12.83246 -12.56090 -12.52319 -12.31398 -12.06649 -11.83532 -11.78469 -11.56377 -11.11858 -10.95852 -10.12355 -9.96291 -9.71519 -9.06242 -8.99595 -6.63262 -0.60604 0.15518 0.62549 0.71640 1.18500 1.34553 1.41664 1.86426 1.97928 2.05054 2.41597 2.78378 3.02291 3.25755 3.32669 3.68120 3.97213 4.12010 4.15647 4.30080 4.33816 4.38612 4.43333 4.53701 4.56641 4.60837 4.71327 4.73131 4.79061 4.84394 4.94191 4.97756 5.04543 5.17046 5.26958 5.31339 5.40965 5.46634 5.59584 5.67906 5.72638 5.97366 6.20510 6.55754 6.65638 8.09092 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.024335 B = 0.003379 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.353395 B = 8283.768914 C = 8356.431390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.122 0.878 4 C -0.444 4.444 5 S 1.235 4.765 6 C -0.478 4.478 7 O -0.911 6.911 8 N -0.991 5.991 9 C 0.095 3.905 10 S 2.702 3.298 11 O -0.999 6.999 12 O -0.967 6.967 13 C -0.638 4.638 14 C -0.137 4.137 15 C -0.092 4.092 16 C -0.203 4.203 17 C 0.057 3.943 18 C -0.487 4.487 19 H 0.057 0.943 20 C 0.048 3.952 21 N -0.842 5.842 22 Si 0.957 3.043 23 H -0.241 1.241 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.132 4.132 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.181 0.819 32 H 0.151 0.849 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.102 0.898 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.112 0.888 41 H 0.297 0.703 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 5.164 -25.525 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.140 0.860 4 C -0.584 4.584 5 S 1.437 4.563 6 C -0.638 4.638 7 O -0.907 6.907 8 N -0.830 5.830 9 C -0.050 4.050 10 S 2.795 3.205 11 O -0.989 6.989 12 O -0.957 6.957 13 C -0.726 4.726 14 C -0.158 4.158 15 C -0.110 4.110 16 C -0.223 4.223 17 C 0.053 3.947 18 C -0.516 4.516 19 H 0.075 0.925 20 C -0.167 4.167 21 N -0.468 5.468 22 Si 0.779 3.221 23 H -0.166 1.166 24 H -0.199 1.199 25 H -0.181 1.181 26 C -0.153 4.153 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.198 0.802 32 H 0.169 0.831 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.414 5.472 -24.588 25.305 hybrid contribution -1.239 -2.301 1.495 3.010 sum 1.175 3.171 -23.093 23.339 Atomic orbital electron populations 1.22167 0.92479 1.03162 1.03777 1.20979 0.96766 0.96832 0.81291 0.85984 1.28001 1.19007 1.07000 1.04365 1.70059 0.87685 1.14031 0.84513 1.27549 1.08779 1.10144 1.17281 1.93136 1.75382 1.75357 1.46808 1.57401 1.69980 1.20780 1.34870 1.21454 1.02005 0.80236 1.01351 1.01409 0.73579 0.72565 0.72904 1.93481 1.69680 1.60660 1.75064 1.93438 1.74011 1.55845 1.72441 1.30618 1.20492 1.07344 1.14126 1.20690 1.00403 0.92996 1.01681 1.21231 0.96672 0.99954 0.93176 1.21535 1.04277 0.96766 0.99674 1.17919 0.90489 0.93023 0.93250 1.19474 1.41732 0.95258 0.95173 0.92526 1.26833 0.91124 1.04190 0.94563 1.69702 1.28181 1.41473 1.07403 0.85619 0.81130 0.77431 0.77930 1.16550 1.19891 1.18121 1.20808 0.99087 0.99668 0.95716 0.93077 0.87697 0.91989 0.88910 0.80193 0.83107 0.87807 0.91266 0.93038 0.92968 0.87955 0.82966 0.83056 0.87002 0.89234 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.17 71.98 0.66 -1.77 16 2 C 0.15 2.82 2.68 44.99 0.12 2.94 16 3 H 0.12 2.05 6.91 -2.39 -0.02 2.04 16 4 C -0.44 -5.49 5.30 71.98 0.38 -5.11 16 5 S 1.24 21.80 13.68 -56.49 -0.77 21.03 16 6 C -0.48 -5.13 10.74 113.37 1.22 -3.91 16 7 O -0.91 -31.00 15.72 -148.98 -2.34 -33.34 16 8 N -0.99 -29.66 1.81 -516.50 -0.94 -30.59 16 9 C 0.09 2.79 9.21 127.77 1.18 3.96 16 10 S 2.70 106.99 5.10 -56.49 -0.29 106.70 16 11 O -1.00 -49.00 16.34 -128.00 -2.09 -51.10 16 12 O -0.97 -35.84 15.82 -128.00 -2.03 -37.86 16 13 C -0.64 -27.30 5.97 22.22 0.13 -27.16 16 14 C -0.14 -5.14 9.53 22.46 0.21 -4.93 16 15 C -0.09 -3.47 10.02 22.22 0.22 -3.25 16 16 C -0.20 -9.26 7.18 22.73 0.16 -9.10 16 17 C 0.06 2.95 5.10 -21.29 -0.11 2.84 16 18 C -0.49 -27.90 9.57 23.46 0.22 -27.68 16 19 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 20 C 0.05 2.60 5.40 85.26 0.46 3.06 16 21 N -0.84 -46.09 13.93 21.83 0.30 -45.79 16 22 Si 0.96 41.88 24.52 68.60 1.68 43.56 16 23 H -0.24 -9.44 6.71 99.48 0.67 -8.78 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.26 -11.74 6.86 99.48 0.68 -11.05 16 26 C -0.13 -6.60 9.26 22.73 0.21 -6.39 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.95 6.66 -2.39 -0.02 0.93 16 30 H 0.09 1.23 7.67 -2.39 -0.02 1.21 16 31 H 0.18 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 1.59 7.47 -2.38 -0.02 1.57 16 36 H 0.05 1.75 7.79 -2.39 -0.02 1.73 16 37 H 0.10 2.21 6.43 -2.39 -0.02 2.20 16 38 H 0.15 4.49 7.59 -2.91 -0.02 4.47 16 39 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.11 4.92 4.73 -2.91 -0.01 4.91 16 41 H 0.30 14.46 8.30 -92.71 -0.77 13.70 16 42 H 0.10 5.19 7.60 -2.91 -0.02 5.17 16 Total: -1.00 -83.58 362.86 -0.43 -84.02 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.96 Total: 19.85 kcal Atomic # 6 Polarization: -81.56 SS G_CDS: 5.08 Total: -76.48 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -0.63 Total: -76.38 kcal Atomic # 8 Polarization: -115.84 SS G_CDS: -6.46 Total: -122.30 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.68 Total: 43.56 kcal Atomic # 16 Polarization: 128.79 SS G_CDS: -1.06 Total: 127.73 kcal Total: -83.58 -0.43 -84.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619496093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.669 kcal (2) G-P(sol) polarization free energy of solvation -83.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds