Wall clock time and date at job start Wed Apr 1 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47418 * 2 1 4 4 C 1.53001 * 109.47435 * 120.00072 * 2 1 3 5 5 S 1.81402 * 109.47214 * 184.99663 * 4 2 1 6 6 C 1.81401 * 102.99950 * 180.02562 * 5 4 2 7 7 O 1.42097 * 109.47135 * 296.39343 * 5 4 2 8 8 N 1.46496 * 109.46945 * 240.00464 * 2 1 3 9 9 C 1.46501 * 119.99850 * 299.99385 * 8 2 1 10 10 S 1.65600 * 120.00234 * 119.99915 * 8 2 1 11 11 O 1.42105 * 106.40335 * 165.16091 * 10 8 2 12 12 O 1.42100 * 106.40399 * 32.24624 * 10 8 2 13 13 C 1.76202 * 107.21766 * 278.69992 * 10 8 2 14 14 C 1.37644 * 120.12462 * 114.52306 * 13 10 8 15 15 C 1.38611 * 120.24526 * 180.32371 * 14 13 10 16 16 C 1.38661 * 120.50207 * 359.67201 * 15 14 13 17 17 C 1.37595 * 120.24550 * 359.97438 * 16 15 14 18 18 C 1.40698 * 120.12874 * 294.22198 * 13 10 8 19 19 C 1.41387 * 120.24229 * 359.97053 * 18 13 10 20 20 H 1.07995 * 120.00782 * 328.55770 * 19 18 13 21 21 C 1.39956 * 119.99657 * 148.55590 * 19 18 13 22 22 N 1.30817 * 119.99938 * 338.25135 * 21 19 18 23 23 Si 1.86794 * 119.99791 * 158.24520 * 21 19 18 24 24 H 1.48505 * 109.47089 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47601 * 300.00236 * 23 21 19 26 26 H 1.48508 * 109.47253 * 60.00490 * 23 21 19 27 27 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46607 * 299.99693 * 1 2 3 29 29 H 1.09000 * 109.47412 * 59.99876 * 1 2 3 30 30 H 1.08997 * 109.46997 * 305.00101 * 4 2 1 31 31 H 1.08998 * 109.46841 * 64.99847 * 4 2 1 32 32 H 1.09001 * 109.46682 * 60.00279 * 6 5 4 33 33 H 1.08999 * 109.46850 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.46877 * 300.00145 * 6 5 4 35 35 H 1.09002 * 109.47477 * 269.18687 * 9 8 2 36 36 H 1.09003 * 109.46923 * 29.19323 * 9 8 2 37 37 H 1.09007 * 109.47094 * 149.18886 * 9 8 2 38 38 H 1.08003 * 119.87887 * 0.02562 * 14 13 10 39 39 H 1.08004 * 119.75009 * 179.69130 * 15 14 13 40 40 H 1.08004 * 119.87423 * 180.02562 * 16 15 14 41 41 H 1.08000 * 120.12410 * 180.02562 * 17 16 15 42 42 H 0.97002 * 120.00509 * 353.67247 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 3.8480 -0.5933 1.3255 6 6 4.2569 -1.4930 2.8467 7 8 4.4178 -1.2652 0.2106 8 7 2.0183 -0.6905 -1.1962 9 6 1.6644 -2.0931 -1.4280 10 16 2.9703 0.1143 -2.2863 11 8 3.5558 -0.8784 -3.1175 12 8 3.7338 1.0504 -1.5379 13 6 1.8982 1.0581 -3.3181 14 6 1.9456 2.4334 -3.2890 15 6 1.0988 3.1784 -4.0947 16 6 0.2003 2.5492 -4.9429 17 6 0.1407 1.1755 -4.9937 18 6 0.9949 0.4088 -4.1795 19 6 0.9423 -1.0034 -4.2229 20 1 1.8352 -1.5830 -4.0408 21 6 -0.2670 -1.6503 -4.5020 22 7 -1.4015 -1.0290 -4.3062 23 14 -0.2610 -3.4007 -5.1542 24 1 -1.6590 -3.8541 -5.3677 25 1 0.4759 -3.4465 -6.4426 26 1 0.4046 -4.2930 -4.1712 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.6055 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2055 32 1 3.9130 -2.5240 2.7625 33 1 5.3364 -1.4808 2.9970 34 1 3.7668 -1.0146 3.6946 35 1 2.4233 -2.7375 -0.9843 36 1 0.6969 -2.3038 -0.9722 37 1 1.6096 -2.2816 -2.5003 38 1 2.6419 2.9340 -2.6324 39 1 1.1392 4.2572 -4.0618 40 1 -0.4546 3.1396 -5.5666 41 1 -0.5596 0.6874 -5.6554 42 1 -1.4099 -0.1565 -3.8825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:50 Heat of formation + Delta-G solvation = -91.300731 kcal Electronic energy + Delta-G solvation = -28204.820602 eV Core-core repulsion = 24403.564086 eV Total energy + Delta-G solvation = -3801.256516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -37.86296 -37.13027 -36.27792 -35.39834 -34.75903 -34.09042 -31.20109 -30.18864 -29.47770 -28.97051 -27.15088 -26.04077 -25.16059 -21.83924 -21.26804 -20.68047 -18.46543 -18.01019 -17.27762 -17.19962 -16.13113 -15.63856 -15.11406 -14.87481 -14.64059 -14.60395 -14.20031 -14.08920 -13.59335 -13.47987 -13.20651 -13.05459 -12.71868 -12.69112 -12.63914 -12.40901 -11.95513 -11.87392 -11.74125 -11.47545 -11.42017 -11.21345 -11.15373 -11.01371 -10.96742 -10.78851 -10.61426 -10.49092 -10.33987 -9.95081 -9.75606 -9.33993 -9.17256 -8.41433 -8.19761 -8.04908 -7.80427 -7.44124 -4.85375 1.52251 1.67092 2.22853 2.63569 2.77845 3.07370 3.15556 3.28389 3.79994 3.85174 4.02366 4.32436 4.83678 4.87826 5.05925 5.07955 5.16350 5.21868 5.37032 5.43797 5.61119 5.69403 5.82123 5.85173 5.91210 6.02692 6.04980 6.11162 6.23408 6.27834 6.44941 6.61034 6.61943 6.70646 6.89182 7.16017 7.22932 7.29761 7.42391 7.58009 7.67726 7.83227 7.98688 8.39452 8.58612 9.79119 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.005655 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.611286 B = 4950.556616 C = 5916.619152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.173 3.827 3 H 0.100 0.900 4 C -0.459 4.459 5 S 1.250 4.750 6 C -0.501 4.501 7 O -0.830 6.830 8 N -0.988 5.988 9 C 0.089 3.911 10 S 2.715 3.285 11 O -0.967 6.967 12 O -0.994 6.994 13 C -0.785 4.785 14 C 0.009 3.991 15 C -0.260 4.260 16 C -0.058 4.058 17 C -0.208 4.208 18 C 0.174 3.826 19 C -0.531 4.531 20 H 0.116 0.884 21 C 0.045 3.955 22 N -0.780 5.780 23 Si 1.055 2.945 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.268 1.268 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 1.772 13.019 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.118 0.882 4 C -0.597 4.597 5 S 1.447 4.553 6 C -0.658 4.658 7 O -0.825 6.825 8 N -0.823 5.823 9 C -0.056 4.056 10 S 2.812 3.188 11 O -0.957 6.957 12 O -0.985 6.985 13 C -0.879 4.879 14 C -0.010 4.010 15 C -0.280 4.280 16 C -0.077 4.077 17 C -0.227 4.227 18 C 0.169 3.831 19 C -0.558 4.558 20 H 0.134 0.866 21 C -0.179 4.179 22 N -0.402 5.402 23 Si 0.877 3.123 24 H -0.196 1.196 25 H -0.194 1.194 26 H -0.193 1.193 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.554 0.898 11.835 11.970 hybrid contribution -0.596 -0.544 0.236 0.841 sum 0.958 0.354 12.072 12.115 Atomic orbital electron populations 1.22108 0.94314 1.02653 1.02364 1.20241 0.95238 0.95513 0.82498 0.88235 1.28122 1.21120 1.06656 1.03835 1.71011 0.85540 1.13570 0.85194 1.27785 1.08254 1.10790 1.18956 1.93173 1.69884 1.75355 1.44069 1.57441 1.69935 1.20818 1.34135 1.21691 0.99138 0.80244 1.04529 1.00836 0.72897 0.72524 0.72529 1.93450 1.75406 1.59556 1.67311 1.93377 1.68572 1.64331 1.72245 1.30122 1.28899 1.05523 1.23335 1.20346 0.94177 0.92113 0.94402 1.20478 1.03817 0.97645 1.06047 1.20851 0.95971 0.94706 0.96128 1.21351 1.05013 0.93266 1.03092 1.17013 0.87412 0.92736 0.85973 1.21464 1.00016 0.92124 1.42186 0.86631 1.27070 0.91179 1.06888 0.92726 1.70458 1.28609 1.16157 1.24972 0.83775 0.77421 0.72678 0.78380 1.19596 1.19408 1.19265 0.92179 0.92037 0.91242 0.85989 0.89018 0.90578 0.88095 0.87450 0.94046 0.92122 0.88401 0.87112 0.88426 0.88618 0.87278 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.17 37.16 0.34 -1.83 16 2 C 0.17 2.62 2.60 -67.93 -0.18 2.45 16 3 H 0.10 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.46 -5.31 5.34 37.16 0.20 -5.11 16 5 S 1.25 15.68 13.64 -107.50 -1.47 14.21 16 6 C -0.50 -4.65 10.74 101.05 1.09 -3.56 16 7 O -0.83 -16.37 16.42 -35.23 -0.58 -16.95 16 8 N -0.99 -19.36 2.03 -114.61 -0.23 -19.59 16 9 C 0.09 1.73 8.89 59.85 0.53 2.26 16 10 S 2.71 63.48 4.48 -107.50 -0.48 63.00 16 11 O -0.97 -25.98 14.67 -57.17 -0.84 -26.82 16 12 O -0.99 -22.51 15.48 -57.50 -0.89 -23.40 16 13 C -0.78 -18.92 5.97 -38.87 -0.23 -19.16 16 14 C 0.01 0.21 9.54 -39.66 -0.38 -0.17 16 15 C -0.26 -5.51 10.05 -39.29 -0.39 -5.90 16 16 C -0.06 -1.26 10.02 -39.66 -0.40 -1.65 16 17 C -0.21 -5.01 7.92 -38.88 -0.31 -5.32 16 18 C 0.17 4.39 5.19 -106.83 -0.55 3.83 16 19 C -0.53 -13.32 6.29 -37.74 -0.24 -13.55 16 20 H 0.12 3.01 4.07 -52.49 -0.21 2.80 16 21 C 0.05 1.07 4.99 -17.34 -0.09 0.98 16 22 N -0.78 -18.79 12.46 55.55 0.69 -18.10 16 23 Si 1.06 20.80 29.98 -169.99 -5.10 15.70 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 27 H 0.06 0.85 6.66 -51.93 -0.35 0.50 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.11 7.51 -51.93 -0.39 0.72 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.02 6.43 -51.93 -0.33 0.69 16 37 H 0.10 2.12 4.26 -51.93 -0.22 1.90 16 38 H 0.11 2.23 7.32 -52.48 -0.38 1.85 16 39 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 41 H 0.11 2.66 6.80 -52.49 -0.36 2.30 16 42 H 0.30 7.38 6.68 -40.82 -0.27 7.10 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -33.46 357.20 -9.61 -43.07 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.49 Total: 10.23 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: -0.61 Total: -46.74 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.46 Total: -37.69 kcal Atomic # 8 Polarization: -64.86 SS G_CDS: -2.31 Total: -67.17 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.10 Total: 15.70 kcal Atomic # 16 Polarization: 79.16 SS G_CDS: -1.95 Total: 77.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.46 -9.61 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.228 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds