Wall clock time and date at job start Wed Apr 1 2020 02:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47418 * 2 1 4 4 C 1.53001 * 109.47435 * 120.00072 * 2 1 3 5 5 S 1.81402 * 109.47214 * 184.99663 * 4 2 1 6 6 C 1.81401 * 102.99950 * 180.02562 * 5 4 2 7 7 O 1.42097 * 109.47135 * 296.39343 * 5 4 2 8 8 N 1.46496 * 109.46945 * 240.00464 * 2 1 3 9 9 C 1.46501 * 119.99850 * 299.99385 * 8 2 1 10 10 S 1.65600 * 120.00234 * 119.99915 * 8 2 1 11 11 O 1.42105 * 106.40335 * 165.16091 * 10 8 2 12 12 O 1.42100 * 106.40399 * 32.24624 * 10 8 2 13 13 C 1.76202 * 107.21766 * 278.69992 * 10 8 2 14 14 C 1.37644 * 120.12462 * 114.52306 * 13 10 8 15 15 C 1.38611 * 120.24526 * 180.32371 * 14 13 10 16 16 C 1.38661 * 120.50207 * 359.67201 * 15 14 13 17 17 C 1.37595 * 120.24550 * 359.97438 * 16 15 14 18 18 C 1.40698 * 120.12874 * 294.22198 * 13 10 8 19 19 C 1.41387 * 120.24229 * 359.97053 * 18 13 10 20 20 H 1.07995 * 120.00782 * 328.55770 * 19 18 13 21 21 C 1.39956 * 119.99657 * 148.55590 * 19 18 13 22 22 N 1.30817 * 119.99938 * 338.25135 * 21 19 18 23 23 Si 1.86794 * 119.99791 * 158.24520 * 21 19 18 24 24 H 1.48505 * 109.47089 * 180.02562 * 23 21 19 25 25 H 1.48499 * 109.47601 * 300.00236 * 23 21 19 26 26 H 1.48508 * 109.47253 * 60.00490 * 23 21 19 27 27 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46607 * 299.99693 * 1 2 3 29 29 H 1.09000 * 109.47412 * 59.99876 * 1 2 3 30 30 H 1.08997 * 109.46997 * 305.00101 * 4 2 1 31 31 H 1.08998 * 109.46841 * 64.99847 * 4 2 1 32 32 H 1.09001 * 109.46682 * 60.00279 * 6 5 4 33 33 H 1.08999 * 109.46850 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.46877 * 300.00145 * 6 5 4 35 35 H 1.09002 * 109.47477 * 269.18687 * 9 8 2 36 36 H 1.09003 * 109.46923 * 29.19323 * 9 8 2 37 37 H 1.09007 * 109.47094 * 149.18886 * 9 8 2 38 38 H 1.08003 * 119.87887 * 0.02562 * 14 13 10 39 39 H 1.08004 * 119.75009 * 179.69130 * 15 14 13 40 40 H 1.08004 * 119.87423 * 180.02562 * 16 15 14 41 41 H 1.08000 * 120.12410 * 180.02562 * 17 16 15 42 42 H 0.97002 * 120.00509 * 353.67247 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 16 3.8480 -0.5933 1.3255 6 6 4.2569 -1.4930 2.8467 7 8 4.4178 -1.2652 0.2106 8 7 2.0183 -0.6905 -1.1962 9 6 1.6644 -2.0931 -1.4280 10 16 2.9703 0.1143 -2.2863 11 8 3.5558 -0.8784 -3.1175 12 8 3.7338 1.0504 -1.5379 13 6 1.8982 1.0581 -3.3181 14 6 1.9456 2.4334 -3.2890 15 6 1.0988 3.1784 -4.0947 16 6 0.2003 2.5492 -4.9429 17 6 0.1407 1.1755 -4.9937 18 6 0.9949 0.4088 -4.1795 19 6 0.9423 -1.0034 -4.2229 20 1 1.8352 -1.5830 -4.0408 21 6 -0.2670 -1.6503 -4.5020 22 7 -1.4015 -1.0290 -4.3062 23 14 -0.2610 -3.4007 -5.1542 24 1 -1.6590 -3.8541 -5.3677 25 1 0.4759 -3.4465 -6.4426 26 1 0.4046 -4.2930 -4.1712 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.6055 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2055 32 1 3.9130 -2.5240 2.7625 33 1 5.3364 -1.4808 2.9970 34 1 3.7668 -1.0146 3.6946 35 1 2.4233 -2.7375 -0.9843 36 1 0.6969 -2.3038 -0.9722 37 1 1.6096 -2.2816 -2.5003 38 1 2.6419 2.9340 -2.6324 39 1 1.1392 4.2572 -4.0618 40 1 -0.4546 3.1396 -5.5666 41 1 -0.5596 0.6874 -5.6554 42 1 -1.4099 -0.1565 -3.8825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:49 Heat of formation + Delta-G solvation = -115.223288 kcal Electronic energy + Delta-G solvation = -28205.857962 eV Core-core repulsion = 24403.564086 eV Total energy + Delta-G solvation = -3802.293876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.64817 -38.47876 -38.11937 -36.67769 -36.57304 -35.87729 -32.53828 -31.96659 -31.26631 -29.77909 -28.17167 -27.63628 -26.87728 -23.60997 -23.03434 -22.01647 -20.23790 -19.63189 -18.88366 -18.33726 -17.86866 -17.11584 -16.72644 -16.31550 -16.08310 -15.83897 -15.66863 -15.47674 -15.14591 -15.03478 -14.70920 -14.51529 -14.18849 -14.14520 -13.75165 -13.60268 -13.49306 -13.25286 -13.04895 -13.03895 -12.94264 -12.84488 -12.73209 -12.71644 -12.50753 -12.32260 -12.17685 -12.00778 -11.79997 -11.56745 -11.12402 -11.01692 -10.93060 -10.06066 -9.83273 -9.62147 -9.29063 -9.06208 -6.72125 -0.22261 0.41447 0.73057 0.85160 1.44872 1.55099 1.73354 1.88066 2.20636 2.23382 2.55364 2.96124 3.13086 3.33149 3.64076 3.75566 4.05628 4.11782 4.23078 4.32823 4.33229 4.39623 4.53969 4.61776 4.63367 4.67770 4.71944 4.80404 4.90470 4.91759 5.01766 5.10212 5.15233 5.27448 5.35979 5.44193 5.48822 5.58143 5.75607 5.83440 5.86502 5.99593 6.17944 6.57277 6.74902 7.93088 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.005655 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.611286 B = 4950.556616 C = 5916.619152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.155 3.845 3 H 0.108 0.892 4 C -0.446 4.446 5 S 1.249 4.751 6 C -0.482 4.482 7 O -0.913 6.913 8 N -0.984 5.984 9 C 0.092 3.908 10 S 2.718 3.282 11 O -1.013 7.013 12 O -0.994 6.994 13 C -0.800 4.800 14 C -0.004 4.004 15 C -0.252 4.252 16 C -0.054 4.054 17 C -0.232 4.232 18 C 0.151 3.849 19 C -0.552 4.552 20 H 0.098 0.902 21 C 0.024 3.976 22 N -0.790 5.790 23 Si 1.087 2.913 24 H -0.259 1.259 25 H -0.269 1.269 26 H -0.255 1.255 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.036 0.964 30 H 0.179 0.821 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.151 0.849 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.098 0.902 42 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 2.912 15.674 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.048 3.952 3 H 0.126 0.874 4 C -0.585 4.585 5 S 1.450 4.550 6 C -0.641 4.641 7 O -0.909 6.909 8 N -0.822 5.822 9 C -0.054 4.054 10 S 2.816 3.184 11 O -1.004 7.004 12 O -0.985 6.985 13 C -0.894 4.894 14 C -0.023 4.023 15 C -0.272 4.272 16 C -0.073 4.073 17 C -0.252 4.252 18 C 0.147 3.853 19 C -0.579 4.579 20 H 0.116 0.884 21 C -0.196 4.196 22 N -0.412 5.412 23 Si 0.905 3.095 24 H -0.183 1.183 25 H -0.194 1.194 26 H -0.179 1.179 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.056 0.944 30 H 0.197 0.803 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.169 0.831 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.116 0.884 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.466 2.080 14.473 14.629 hybrid contribution -0.242 -0.750 -0.408 0.887 sum 0.224 1.330 14.065 14.130 Atomic orbital electron populations 1.22076 0.93266 1.02632 1.02845 1.20734 0.96156 0.96140 0.82131 0.87401 1.28024 1.19632 1.06668 1.04203 1.69938 0.85873 1.14159 0.85026 1.27595 1.09162 1.10028 1.17333 1.93089 1.72396 1.77376 1.47992 1.57180 1.69739 1.20529 1.34762 1.21617 1.00255 0.80362 1.03123 1.00482 0.73171 0.72180 0.72545 1.93383 1.76950 1.60950 1.69081 1.93352 1.68912 1.64273 1.71920 1.30374 1.28576 1.06702 1.23723 1.20723 0.94920 0.91628 0.95076 1.20941 1.02314 0.99574 1.04377 1.21244 0.96012 0.93991 0.96013 1.21372 1.05579 0.94543 1.03684 1.17295 0.88229 0.93235 0.86564 1.21427 0.99991 0.92336 1.44144 0.88402 1.28002 0.90455 1.09129 0.92057 1.70533 1.28695 1.15944 1.26001 0.83397 0.78068 0.69815 0.78235 1.18327 1.19431 1.17874 0.92435 0.87803 0.94435 0.80307 0.89283 0.91416 0.87586 0.83052 0.94325 0.89670 0.90966 0.85131 0.84611 0.85337 0.88401 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.17 71.98 0.66 -3.21 16 2 C 0.15 4.44 2.60 44.99 0.12 4.55 16 3 H 0.11 2.88 7.16 -2.39 -0.02 2.87 16 4 C -0.45 -8.94 5.34 71.98 0.38 -8.56 16 5 S 1.25 29.49 13.64 -56.49 -0.77 28.72 16 6 C -0.48 -7.33 10.74 113.37 1.22 -6.11 16 7 O -0.91 -36.97 16.42 -148.98 -2.45 -39.41 16 8 N -0.98 -39.08 2.03 -516.51 -1.05 -40.12 16 9 C 0.09 3.66 8.89 127.77 1.14 4.80 16 10 S 2.72 131.14 4.48 -56.49 -0.25 130.89 16 11 O -1.01 -57.61 14.67 -128.00 -1.88 -59.49 16 12 O -0.99 -45.67 15.48 -127.68 -1.98 -47.65 16 13 C -0.80 -39.33 5.97 22.73 0.14 -39.20 16 14 C 0.00 -0.17 9.54 22.22 0.21 0.05 16 15 C -0.25 -10.13 10.05 22.46 0.23 -9.91 16 16 C -0.05 -2.28 10.02 22.22 0.22 -2.06 16 17 C -0.23 -11.38 7.92 22.73 0.18 -11.20 16 18 C 0.15 7.89 5.19 -21.29 -0.11 7.78 16 19 C -0.55 -28.91 6.29 23.46 0.15 -28.76 16 20 H 0.10 5.44 4.07 -2.91 -0.01 5.43 16 21 C 0.02 1.16 4.99 85.26 0.43 1.59 16 22 N -0.79 -38.93 12.46 21.83 0.27 -38.65 16 23 Si 1.09 42.66 29.98 68.60 2.06 44.71 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 25 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 27 H 0.06 1.51 6.66 -2.39 -0.02 1.49 16 28 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.18 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.91 7.51 -2.39 -0.02 1.89 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.15 0.98 8.14 -2.39 -0.02 0.97 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 2.88 6.43 -2.39 -0.02 2.86 16 37 H 0.07 3.30 4.26 -2.38 -0.01 3.29 16 38 H 0.13 5.08 7.32 -2.91 -0.02 5.06 16 39 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.10 4.92 6.80 -2.91 -0.02 4.90 16 42 H 0.29 14.71 6.68 -92.71 -0.62 14.09 16 Total: -1.00 -78.22 357.20 0.10 -78.12 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 1.19 Total: 33.11 kcal Atomic # 6 Polarization: -95.18 SS G_CDS: 4.95 Total: -90.22 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -0.78 Total: -78.78 kcal Atomic # 8 Polarization: -140.25 SS G_CDS: -6.30 Total: -146.55 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.06 Total: 44.71 kcal Atomic # 16 Polarization: 160.63 SS G_CDS: -1.02 Total: 159.60 kcal Total: -78.22 0.10 -78.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.106 kcal (2) G-P(sol) polarization free energy of solvation -78.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds