Wall clock time and date at job start Wed Apr 1 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46748 * 2 1 4 4 C 1.52995 * 109.47223 * 240.00159 * 2 1 3 5 5 S 1.81396 * 109.47300 * 180.02562 * 4 2 1 6 6 C 1.81400 * 103.00560 * 179.97438 * 5 4 2 7 7 O 1.42104 * 109.47032 * 296.38806 * 5 4 2 8 8 N 1.46501 * 109.46945 * 120.00169 * 2 1 3 9 9 C 1.46499 * 120.00052 * 54.82690 * 8 2 1 10 10 S 1.65596 * 119.99740 * 234.83052 * 8 2 1 11 11 O 1.42100 * 106.40202 * 212.01236 * 10 8 2 12 12 O 1.42098 * 106.40553 * 344.93540 * 10 8 2 13 13 C 1.76208 * 107.21972 * 98.47811 * 10 8 2 14 14 C 1.37632 * 120.12816 * 113.58900 * 13 10 8 15 15 C 1.38619 * 120.24785 * 180.02562 * 14 13 10 16 16 C 1.38659 * 120.49834 * 359.97336 * 15 14 13 17 17 C 1.37597 * 120.25145 * 0.02632 * 16 15 14 18 18 C 1.40699 * 120.12341 * 293.31362 * 13 10 8 19 19 C 1.41394 * 120.24489 * 359.97438 * 18 13 10 20 20 H 1.07994 * 120.00400 * 329.94697 * 19 18 13 21 21 C 1.39947 * 120.00106 * 149.94724 * 19 18 13 22 22 N 1.30827 * 119.99669 * 348.84228 * 21 19 18 23 23 Si 1.86800 * 120.00283 * 168.83852 * 21 19 18 24 24 H 1.48499 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46915 * 119.99849 * 23 21 19 26 26 H 1.48499 * 109.46985 * 239.99935 * 23 21 19 27 27 H 1.09008 * 109.46994 * 60.00062 * 1 2 3 28 28 H 1.08991 * 109.47522 * 299.99798 * 1 2 3 29 29 H 1.08999 * 109.47327 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47074 * 299.99978 * 4 2 1 31 31 H 1.08998 * 109.47438 * 59.99852 * 4 2 1 32 32 H 1.09001 * 109.46899 * 59.99604 * 6 5 4 33 33 H 1.08997 * 109.47326 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46977 * 300.00278 * 6 5 4 35 35 H 1.09002 * 109.47084 * 89.99950 * 9 8 2 36 36 H 1.09007 * 109.47115 * 210.00153 * 9 8 2 37 37 H 1.08996 * 109.47127 * 330.00141 * 9 8 2 38 38 H 1.07998 * 119.87661 * 0.02562 * 14 13 10 39 39 H 1.07997 * 119.74713 * 179.97438 * 15 14 13 40 40 H 1.08001 * 119.87221 * 180.02562 * 16 15 14 41 41 H 1.07994 * 120.12828 * 179.97438 * 17 16 15 42 42 H 0.97005 * 120.00194 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 16 3.8540 -0.7219 -1.2488 6 6 4.2622 -1.6062 -2.7792 7 8 4.3282 0.6151 -1.3329 8 7 2.0183 -0.6907 1.1962 9 6 1.5734 -2.0559 1.4866 10 16 3.0731 0.0720 2.2199 11 8 3.9055 -0.9418 2.7666 12 8 3.5792 1.1948 1.5112 13 6 2.1266 0.7147 3.5600 14 6 2.2950 0.2100 4.8294 15 6 1.5513 0.7135 5.8853 16 6 0.6313 1.7297 5.6767 17 6 0.4464 2.2494 4.4161 18 6 1.2000 1.7499 3.3376 19 6 1.0232 2.2806 2.0389 20 1 1.8479 2.2881 1.3418 21 6 -0.2206 2.7960 1.6570 22 7 -1.2715 2.5935 2.4095 23 14 -0.3802 3.7731 0.0730 24 1 0.9453 3.8600 -0.5907 25 1 -1.3438 3.0957 -0.8314 26 1 -0.8690 5.1408 0.3822 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.8436 -1.0703 -3.6311 33 1 5.3453 -1.6676 -2.8855 34 1 3.8429 -2.6116 -2.7407 35 1 2.2551 -2.7672 1.0202 36 1 1.5657 -2.2138 2.5652 37 1 0.5686 -2.2025 1.0907 38 1 3.0091 -0.5812 5.0033 39 1 1.6897 0.3112 6.8780 40 1 0.0576 2.1147 6.5068 41 1 -0.2710 3.0405 4.2558 42 1 -2.1337 2.9504 2.1446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:53 Heat of formation + Delta-G solvation = -81.247390 kcal Electronic energy + Delta-G solvation = -28301.895049 eV Core-core repulsion = 24501.074478 eV Total energy + Delta-G solvation = -3800.820571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -37.67976 -37.11508 -36.30293 -35.34027 -34.87126 -33.93851 -31.24725 -30.24234 -29.57577 -28.93731 -27.02434 -25.98898 -25.47071 -21.69738 -21.15585 -20.67345 -18.18841 -17.66798 -17.38243 -17.11319 -16.13110 -15.65414 -15.39593 -14.98157 -14.82611 -14.36581 -14.25860 -13.83527 -13.61387 -13.37954 -13.14083 -13.01810 -12.78019 -12.75366 -12.49507 -12.19089 -12.02284 -11.98899 -11.59906 -11.50064 -11.38969 -11.24597 -11.17853 -11.12303 -11.02739 -10.76362 -10.58530 -10.50572 -10.19283 -9.88898 -9.82832 -9.41396 -9.22167 -8.54105 -8.03362 -7.99346 -7.60370 -7.08332 -4.79902 1.44999 1.66906 2.32068 2.68306 2.80768 2.94165 3.04656 3.05548 3.74856 3.79617 4.01661 4.35440 4.70023 5.03328 5.08993 5.14170 5.24181 5.26587 5.34919 5.53114 5.71346 5.83262 5.86700 5.93430 5.96321 6.02572 6.10835 6.15579 6.22543 6.28679 6.39544 6.67280 6.77415 6.93281 6.96087 7.03252 7.21722 7.33164 7.50274 7.68647 7.79326 7.94071 8.35811 8.49729 8.63846 9.84251 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.006680 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.722268 B = 4190.843893 C = 5628.059059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.172 3.828 3 H 0.116 0.884 4 C -0.454 4.454 5 S 1.216 4.784 6 C -0.497 4.497 7 O -0.819 6.819 8 N -0.997 5.997 9 C 0.092 3.908 10 S 2.683 3.317 11 O -0.989 6.989 12 O -0.955 6.955 13 C -0.774 4.774 14 C -0.005 4.005 15 C -0.247 4.247 16 C -0.078 4.078 17 C -0.156 4.156 18 C 0.193 3.807 19 C -0.475 4.475 20 H 0.117 0.883 21 C 0.087 3.913 22 N -0.778 5.778 23 Si 0.888 3.112 24 H -0.247 1.247 25 H -0.266 1.266 26 H -0.267 1.267 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 -9.943 -5.633 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.134 0.866 4 C -0.594 4.594 5 S 1.413 4.587 6 C -0.654 4.654 7 O -0.814 6.814 8 N -0.833 5.833 9 C -0.053 4.053 10 S 2.782 3.218 11 O -0.979 6.979 12 O -0.945 6.945 13 C -0.869 4.869 14 C -0.025 4.025 15 C -0.267 4.267 16 C -0.097 4.097 17 C -0.176 4.176 18 C 0.189 3.811 19 C -0.503 4.503 20 H 0.135 0.865 21 C -0.134 4.134 22 N -0.402 5.402 23 Si 0.711 3.289 24 H -0.170 1.170 25 H -0.191 1.191 26 H -0.192 1.192 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.141 0.859 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.445 -9.476 -5.162 10.887 hybrid contribution -1.979 1.544 -1.998 3.208 sum -0.534 -7.932 -7.160 10.699 Atomic orbital electron populations 1.22262 0.94115 1.01930 1.03979 1.20443 0.95744 0.96638 0.80715 0.86619 1.28071 1.20190 1.07412 1.03682 1.70989 0.87864 0.98894 1.00918 1.27756 1.08230 1.10924 1.18473 1.93264 1.72633 1.34642 1.80850 1.57675 1.65384 1.23913 1.36294 1.21403 1.00524 0.81901 1.01512 1.01752 0.73343 0.73044 0.73681 1.93454 1.65058 1.59648 1.79780 1.93589 1.77684 1.50670 1.72576 1.29854 1.27704 1.16449 1.12906 1.20257 0.95009 0.95445 0.91779 1.20508 1.04156 1.04620 0.97456 1.20915 0.96335 0.95873 0.96537 1.21517 1.02655 1.02005 0.91377 1.17002 0.85884 0.85297 0.92966 1.20583 0.97765 1.33023 0.98911 0.86531 1.25896 0.95187 0.93460 0.98811 1.69808 1.00504 1.33639 1.36210 0.86528 0.80719 0.80138 0.81501 1.16979 1.19098 1.19199 0.92967 0.88486 0.92703 0.86248 0.88835 0.90486 0.87959 0.87292 0.92551 0.91251 0.91021 0.87374 0.88690 0.88852 0.85868 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 8.74 37.16 0.32 -2.33 16 2 C 0.17 2.97 1.75 -67.93 -0.12 2.85 16 3 H 0.12 2.41 4.97 -51.93 -0.26 2.15 16 4 C -0.45 -6.07 5.37 37.15 0.20 -5.87 16 5 S 1.22 17.72 13.38 -107.50 -1.44 16.28 16 6 C -0.50 -5.18 10.74 101.05 1.09 -4.10 16 7 O -0.82 -17.61 17.94 -35.23 -0.63 -18.24 16 8 N -1.00 -17.33 2.60 -114.61 -0.30 -17.63 16 9 C 0.09 1.21 9.57 59.85 0.57 1.78 16 10 S 2.68 58.05 5.02 -107.50 -0.54 57.51 16 11 O -0.99 -21.24 16.35 -57.17 -0.93 -22.18 16 12 O -0.95 -23.56 14.04 -57.26 -0.80 -24.36 16 13 C -0.77 -18.22 5.97 -38.87 -0.23 -18.45 16 14 C -0.01 -0.11 9.53 -39.66 -0.38 -0.49 16 15 C -0.25 -5.30 10.05 -39.29 -0.39 -5.69 16 16 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 17 C -0.16 -3.77 8.65 -38.87 -0.34 -4.11 16 18 C 0.19 4.80 5.53 -106.82 -0.59 4.21 16 19 C -0.47 -11.56 5.89 -37.74 -0.22 -11.79 16 20 H 0.12 2.95 3.89 -52.49 -0.20 2.75 16 21 C 0.09 1.98 3.57 -17.34 -0.06 1.91 16 22 N -0.78 -17.62 10.93 55.55 0.61 -17.01 16 23 Si 0.89 17.80 29.53 -169.99 -5.02 12.78 16 24 H -0.25 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 27 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 28 H 0.10 1.87 5.36 -51.93 -0.28 1.59 16 29 H 0.05 0.73 6.52 -51.93 -0.34 0.39 16 30 H 0.12 1.11 7.80 -51.92 -0.41 0.71 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.11 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 37 H 0.07 0.80 6.17 -51.93 -0.32 0.48 16 38 H 0.11 2.20 7.32 -52.49 -0.38 1.81 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.12 3.01 6.32 -52.49 -0.33 2.68 16 42 H 0.29 5.88 8.30 -40.82 -0.34 5.55 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -32.27 356.12 -9.70 -41.97 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.45 Total: 9.69 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: -0.55 Total: -44.18 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.31 Total: -34.64 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -2.37 Total: -64.78 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.02 Total: 12.78 kcal Atomic # 16 Polarization: 75.77 SS G_CDS: -1.98 Total: 73.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.27 -9.70 -41.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.281 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds