Wall clock time and date at job start Wed Apr 1 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46748 * 2 1 4 4 C 1.52995 * 109.47223 * 240.00159 * 2 1 3 5 5 S 1.81396 * 109.47300 * 180.02562 * 4 2 1 6 6 C 1.81400 * 103.00560 * 179.97438 * 5 4 2 7 7 O 1.42104 * 109.47032 * 296.38806 * 5 4 2 8 8 N 1.46501 * 109.46945 * 120.00169 * 2 1 3 9 9 C 1.46499 * 120.00052 * 54.82690 * 8 2 1 10 10 S 1.65596 * 119.99740 * 234.83052 * 8 2 1 11 11 O 1.42100 * 106.40202 * 212.01236 * 10 8 2 12 12 O 1.42098 * 106.40553 * 344.93540 * 10 8 2 13 13 C 1.76208 * 107.21972 * 98.47811 * 10 8 2 14 14 C 1.37632 * 120.12816 * 113.58900 * 13 10 8 15 15 C 1.38619 * 120.24785 * 180.02562 * 14 13 10 16 16 C 1.38659 * 120.49834 * 359.97336 * 15 14 13 17 17 C 1.37597 * 120.25145 * 0.02632 * 16 15 14 18 18 C 1.40699 * 120.12341 * 293.31362 * 13 10 8 19 19 C 1.41394 * 120.24489 * 359.97438 * 18 13 10 20 20 H 1.07994 * 120.00400 * 329.94697 * 19 18 13 21 21 C 1.39947 * 120.00106 * 149.94724 * 19 18 13 22 22 N 1.30827 * 119.99669 * 348.84228 * 21 19 18 23 23 Si 1.86800 * 120.00283 * 168.83852 * 21 19 18 24 24 H 1.48499 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46915 * 119.99849 * 23 21 19 26 26 H 1.48499 * 109.46985 * 239.99935 * 23 21 19 27 27 H 1.09008 * 109.46994 * 60.00062 * 1 2 3 28 28 H 1.08991 * 109.47522 * 299.99798 * 1 2 3 29 29 H 1.08999 * 109.47327 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47074 * 299.99978 * 4 2 1 31 31 H 1.08998 * 109.47438 * 59.99852 * 4 2 1 32 32 H 1.09001 * 109.46899 * 59.99604 * 6 5 4 33 33 H 1.08997 * 109.47326 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46977 * 300.00278 * 6 5 4 35 35 H 1.09002 * 109.47084 * 89.99950 * 9 8 2 36 36 H 1.09007 * 109.47115 * 210.00153 * 9 8 2 37 37 H 1.08996 * 109.47127 * 330.00141 * 9 8 2 38 38 H 1.07998 * 119.87661 * 0.02562 * 14 13 10 39 39 H 1.07997 * 119.74713 * 179.97438 * 15 14 13 40 40 H 1.08001 * 119.87221 * 180.02562 * 16 15 14 41 41 H 1.07994 * 120.12828 * 179.97438 * 17 16 15 42 42 H 0.97005 * 120.00194 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 16 3.8540 -0.7219 -1.2488 6 6 4.2622 -1.6062 -2.7792 7 8 4.3282 0.6151 -1.3329 8 7 2.0183 -0.6907 1.1962 9 6 1.5734 -2.0559 1.4866 10 16 3.0731 0.0720 2.2199 11 8 3.9055 -0.9418 2.7666 12 8 3.5792 1.1948 1.5112 13 6 2.1266 0.7147 3.5600 14 6 2.2950 0.2100 4.8294 15 6 1.5513 0.7135 5.8853 16 6 0.6313 1.7297 5.6767 17 6 0.4464 2.2494 4.4161 18 6 1.2000 1.7499 3.3376 19 6 1.0232 2.2806 2.0389 20 1 1.8479 2.2881 1.3418 21 6 -0.2206 2.7960 1.6570 22 7 -1.2715 2.5935 2.4095 23 14 -0.3802 3.7731 0.0730 24 1 0.9453 3.8600 -0.5907 25 1 -1.3438 3.0957 -0.8314 26 1 -0.8690 5.1408 0.3822 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.8436 -1.0703 -3.6311 33 1 5.3453 -1.6676 -2.8855 34 1 3.8429 -2.6116 -2.7407 35 1 2.2551 -2.7672 1.0202 36 1 1.5657 -2.2138 2.5652 37 1 0.5686 -2.2025 1.0907 38 1 3.0091 -0.5812 5.0033 39 1 1.6897 0.3112 6.8780 40 1 0.0576 2.1147 6.5068 41 1 -0.2710 3.0405 4.2558 42 1 -2.1337 2.9504 2.1446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:53 Heat of formation + Delta-G solvation = -105.055970 kcal Electronic energy + Delta-G solvation = -28302.927466 eV Core-core repulsion = 24501.074478 eV Total energy + Delta-G solvation = -3801.852988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.39742 -38.48843 -37.96373 -36.68975 -36.60507 -35.67357 -32.47591 -31.98629 -31.33237 -29.83398 -28.20571 -27.35626 -26.99136 -23.41535 -22.90797 -22.02595 -19.75546 -19.34705 -18.85791 -18.40100 -17.77252 -17.19857 -16.92168 -16.22839 -16.20057 -15.85652 -15.72672 -15.16136 -15.01367 -14.86053 -14.64486 -14.49973 -14.28098 -13.81875 -13.71877 -13.52966 -13.41274 -13.27460 -13.04109 -12.96870 -12.92338 -12.88604 -12.85431 -12.70089 -12.38490 -12.33506 -12.22292 -12.08015 -11.65171 -11.51717 -11.14298 -11.00713 -10.90938 -9.89514 -9.73277 -9.38569 -9.14691 -8.80657 -6.59406 -0.16057 0.55928 0.59716 0.96131 1.28218 1.37753 1.40564 1.79051 2.10520 2.29907 2.61040 2.89256 3.04566 3.52153 3.68805 3.84697 4.13512 4.17869 4.29360 4.35520 4.50570 4.52326 4.54008 4.64701 4.74251 4.87208 4.92150 4.97029 5.02113 5.03877 5.10258 5.19636 5.21665 5.31258 5.44199 5.57664 5.63722 5.73201 5.86789 5.95501 6.02955 6.17487 6.55854 6.72814 6.85907 8.15281 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.006680 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.722268 B = 4190.843893 C = 5628.059059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 H 0.071 0.929 4 C -0.440 4.440 5 S 1.199 4.801 6 C -0.475 4.475 7 O -0.907 6.907 8 N -0.988 5.988 9 C 0.074 3.926 10 S 2.695 3.305 11 O -0.993 6.993 12 O -0.993 6.993 13 C -0.795 4.795 14 C -0.018 4.018 15 C -0.249 4.249 16 C -0.077 4.077 17 C -0.184 4.184 18 C 0.169 3.831 19 C -0.491 4.491 20 H 0.099 0.901 21 C 0.073 3.927 22 N -0.791 5.791 23 Si 0.927 3.073 24 H -0.274 1.274 25 H -0.239 1.239 26 H -0.260 1.260 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.155 0.845 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 -13.036 -6.646 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.059 3.941 3 H 0.089 0.911 4 C -0.580 4.580 5 S 1.401 4.599 6 C -0.634 4.634 7 O -0.902 6.902 8 N -0.827 5.827 9 C -0.070 4.070 10 S 2.792 3.208 11 O -0.983 6.983 12 O -0.984 6.984 13 C -0.889 4.889 14 C -0.037 4.037 15 C -0.268 4.268 16 C -0.096 4.096 17 C -0.204 4.204 18 C 0.165 3.835 19 C -0.519 4.519 20 H 0.116 0.884 21 C -0.147 4.147 22 N -0.415 5.415 23 Si 0.748 3.252 24 H -0.199 1.199 25 H -0.162 1.162 26 H -0.185 1.185 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.191 0.809 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.173 0.827 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.105 -12.552 -6.113 13.962 hybrid contribution -1.568 2.345 -1.699 3.293 sum -1.463 -10.207 -7.813 12.937 Atomic orbital electron populations 1.22220 0.93210 1.03828 1.02749 1.20402 0.96376 0.95264 0.82057 0.91135 1.27917 1.18201 1.10123 1.01752 1.69811 0.88719 0.97214 1.04127 1.27543 1.09182 1.12026 1.14688 1.93179 1.75108 1.37796 1.84123 1.57333 1.64992 1.25111 1.35270 1.21890 1.03125 0.80066 1.01906 1.01238 0.73625 0.72532 0.73383 1.93428 1.65554 1.59242 1.80109 1.93546 1.78910 1.52763 1.73155 1.30284 1.27400 1.16603 1.14573 1.20603 0.95509 0.95925 0.91698 1.20912 1.03222 1.03947 0.98768 1.21251 0.96266 0.95524 0.96511 1.21548 1.03587 1.02823 0.92471 1.17262 0.86795 0.86071 0.93419 1.20489 0.98078 1.34603 0.98759 0.88378 1.26203 0.94520 0.93533 1.00449 1.69798 1.00924 1.33785 1.37011 0.85987 0.79770 0.79845 0.79582 1.19871 1.16195 1.18470 0.92248 0.91704 0.89135 0.80940 0.88070 0.90664 0.87146 0.82657 0.88360 0.92025 0.88457 0.85735 0.85376 0.86044 0.86966 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.94 8.74 71.98 0.63 -4.31 16 2 C 0.17 5.62 1.75 44.99 0.08 5.70 16 3 H 0.07 3.09 4.97 -2.39 -0.01 3.08 16 4 C -0.44 -10.56 5.37 71.98 0.39 -10.18 16 5 S 1.20 33.84 13.38 -56.49 -0.76 33.08 16 6 C -0.47 -8.18 10.74 113.37 1.22 -6.97 16 7 O -0.91 -41.03 17.94 -148.98 -2.67 -43.70 16 8 N -0.99 -33.47 2.60 -516.51 -1.34 -34.82 16 9 C 0.07 1.71 9.57 127.77 1.22 2.93 16 10 S 2.69 119.31 5.02 -56.49 -0.28 119.03 16 11 O -0.99 -42.70 16.35 -128.00 -2.09 -44.79 16 12 O -0.99 -52.10 14.04 -127.92 -1.80 -53.90 16 13 C -0.80 -38.31 5.97 22.73 0.14 -38.18 16 14 C -0.02 -0.78 9.53 22.22 0.21 -0.57 16 15 C -0.25 -10.34 10.05 22.46 0.23 -10.11 16 16 C -0.08 -3.35 10.02 22.22 0.22 -3.12 16 17 C -0.18 -9.15 8.65 22.73 0.20 -8.95 16 18 C 0.17 8.70 5.53 -21.29 -0.12 8.58 16 19 C -0.49 -25.08 5.89 23.46 0.14 -24.95 16 20 H 0.10 5.36 3.89 -2.91 -0.01 5.34 16 21 C 0.07 3.39 3.57 85.26 0.30 3.69 16 22 N -0.79 -36.36 10.93 21.83 0.24 -36.12 16 23 Si 0.93 37.16 29.53 68.60 2.03 39.18 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.24 -8.43 7.11 99.48 0.71 -7.73 16 26 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 27 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.06 2.47 5.36 -2.39 -0.01 2.46 16 29 H 0.09 2.06 6.52 -2.39 -0.02 2.04 16 30 H 0.17 2.21 7.80 -2.39 -0.02 2.19 16 31 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.54 8.00 -2.38 -0.02 1.52 16 37 H 0.10 1.74 6.17 -2.39 -0.01 1.73 16 38 H 0.12 4.97 7.32 -2.91 -0.02 4.95 16 39 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 40 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.11 5.68 6.32 -2.91 -0.02 5.66 16 42 H 0.30 12.16 8.30 -92.70 -0.77 11.39 16 Total: -1.00 -77.13 356.12 -0.78 -77.91 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 1.04 Total: 30.54 kcal Atomic # 6 Polarization: -91.28 SS G_CDS: 4.85 Total: -86.43 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.10 Total: -70.93 kcal Atomic # 8 Polarization: -135.83 SS G_CDS: -6.56 Total: -142.39 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 16 Polarization: 153.15 SS G_CDS: -1.04 Total: 152.11 kcal Total: -77.13 -0.78 -77.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.144 kcal (2) G-P(sol) polarization free energy of solvation -77.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds