Wall clock time and date at job start Wed Apr 1 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47410 * 2 1 4 4 C 1.53001 * 109.47102 * 119.99973 * 2 1 3 5 5 S 1.81404 * 109.46947 * 184.99792 * 4 2 1 6 6 C 1.81402 * 102.99757 * 179.97438 * 5 4 2 7 7 O 1.42100 * 109.46705 * 63.61422 * 5 4 2 8 8 N 1.46495 * 109.46995 * 240.00019 * 2 1 3 9 9 C 1.46501 * 120.00004 * 299.99597 * 8 2 1 10 10 S 1.65604 * 120.00442 * 120.00097 * 8 2 1 11 11 O 1.42098 * 106.40725 * 165.18662 * 10 8 2 12 12 O 1.42107 * 106.39886 * 32.26655 * 10 8 2 13 13 C 1.76199 * 107.21576 * 278.73227 * 10 8 2 14 14 C 1.37639 * 120.12932 * 114.52529 * 13 10 8 15 15 C 1.38610 * 120.24408 * 180.31347 * 14 13 10 16 16 C 1.38655 * 120.50646 * 359.67866 * 15 14 13 17 17 C 1.37600 * 120.24475 * 359.97438 * 16 15 14 18 18 C 1.40700 * 120.12526 * 294.21549 * 13 10 8 19 19 C 1.41393 * 120.24360 * 359.97438 * 18 13 10 20 20 H 1.07998 * 120.00340 * 328.66589 * 19 18 13 21 21 C 1.39945 * 119.99987 * 148.66516 * 19 18 13 22 22 N 1.30829 * 119.99988 * 338.11117 * 21 19 18 23 23 Si 1.86803 * 120.00024 * 158.11367 * 21 19 18 24 24 H 1.48504 * 109.47118 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.46974 * 299.99849 * 23 21 19 26 26 H 1.48494 * 109.47154 * 60.00018 * 23 21 19 27 27 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47149 * 299.99942 * 1 2 3 29 29 H 1.09003 * 109.47301 * 59.99826 * 1 2 3 30 30 H 1.08994 * 109.47144 * 304.99668 * 4 2 1 31 31 H 1.08994 * 109.47090 * 65.00215 * 4 2 1 32 32 H 1.08996 * 109.46936 * 60.00405 * 6 5 4 33 33 H 1.09000 * 109.46939 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47366 * 300.00075 * 6 5 4 35 35 H 1.09002 * 109.47477 * 269.06621 * 9 8 2 36 36 H 1.09003 * 109.46923 * 29.07257 * 9 8 2 37 37 H 1.09007 * 109.47094 * 149.06820 * 9 8 2 38 38 H 1.08000 * 119.87529 * 0.02562 * 14 13 10 39 39 H 1.08002 * 119.75008 * 179.69216 * 15 14 13 40 40 H 1.07999 * 119.88065 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.12564 * 180.02562 * 17 16 15 42 42 H 0.96997 * 120.00081 * 353.71431 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 3.8479 -0.5933 1.3256 6 6 4.2566 -1.4917 2.8476 7 8 4.2205 0.7707 1.4667 8 7 2.0183 -0.6906 -1.1961 9 6 1.6644 -2.0932 -1.4279 10 16 2.9704 0.1141 -2.2863 11 8 3.5554 -0.8786 -3.1178 12 8 3.7343 1.0499 -1.5378 13 6 1.8984 1.0586 -3.3176 14 6 1.9462 2.4338 -3.2883 15 6 1.0996 3.1792 -4.0938 16 6 0.2007 2.5505 -4.9419 17 6 0.1404 1.1768 -4.9928 18 6 0.9947 0.4097 -4.1790 19 6 0.9416 -1.0025 -4.2227 20 1 1.8340 -1.5825 -4.0392 21 6 -0.2674 -1.6489 -4.5039 22 7 -1.4022 -1.0282 -4.3073 23 14 -0.2609 -3.3980 -5.1599 24 1 -1.6586 -3.8511 -5.3752 25 1 0.4769 -3.4408 -6.4479 26 1 0.4042 -4.2922 -4.1785 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6054 -0.2617 2.1369 31 1 1.7517 -1.7715 1.2056 32 1 3.9128 -2.5226 2.7644 33 1 5.3361 -1.4793 2.9980 34 1 3.7665 -1.0125 3.6951 35 1 2.4244 -2.7375 -0.9860 36 1 0.6979 -2.3045 -0.9703 37 1 1.6075 -2.2812 -2.5002 38 1 2.6429 2.9340 -2.6318 39 1 1.1404 4.2579 -4.0607 40 1 -0.4541 3.1412 -5.5654 41 1 -0.5602 0.6891 -5.6544 42 1 -1.4108 -0.1564 -3.8822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:57 Heat of formation + Delta-G solvation = -90.283348 kcal Electronic energy + Delta-G solvation = -28001.481788 eV Core-core repulsion = 24200.269389 eV Total energy + Delta-G solvation = -3801.212399 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -37.89220 -37.19150 -36.42379 -35.43453 -34.95286 -34.12105 -31.30975 -30.23011 -29.49806 -28.99347 -27.17903 -26.12226 -25.20650 -21.88629 -21.29985 -20.75996 -18.49738 -18.04759 -17.43500 -17.17219 -16.21450 -15.71119 -15.14337 -15.02142 -14.82702 -14.63997 -14.15453 -14.01256 -13.65207 -13.58430 -13.25946 -13.13188 -12.81265 -12.73179 -12.57082 -12.44238 -12.12422 -11.85346 -11.82780 -11.50899 -11.41469 -11.27485 -11.21998 -11.13094 -11.04140 -10.84109 -10.65867 -10.52064 -10.40243 -9.97185 -9.81781 -9.39043 -9.22919 -8.58283 -8.23751 -8.04741 -7.82800 -7.46801 -4.88801 1.39133 1.60615 2.19409 2.61718 2.74589 3.04526 3.12911 3.25814 3.69630 3.82308 3.95343 4.29837 4.62822 4.84216 4.99426 5.06698 5.10476 5.21616 5.31277 5.34533 5.60698 5.62886 5.79081 5.83520 5.90572 5.98738 6.03373 6.04523 6.08591 6.26500 6.40649 6.52905 6.59218 6.63757 6.86142 7.11431 7.13805 7.26995 7.38419 7.55675 7.64316 7.79380 7.95132 8.35951 8.55973 9.76407 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.005482 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.891833 B = 5106.378606 C = 6135.751076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.175 3.825 3 H 0.096 0.904 4 C -0.453 4.453 5 S 1.234 4.766 6 C -0.501 4.501 7 O -0.824 6.824 8 N -0.994 5.994 9 C 0.077 3.923 10 S 2.690 3.310 11 O -0.966 6.966 12 O -0.980 6.980 13 C -0.779 4.779 14 C 0.010 3.990 15 C -0.259 4.259 16 C -0.057 4.057 17 C -0.208 4.208 18 C 0.174 3.826 19 C -0.532 4.532 20 H 0.118 0.882 21 C 0.045 3.955 22 N -0.780 5.780 23 Si 1.056 2.944 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.266 1.266 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 -6.398 8.029 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.067 3.933 3 H 0.114 0.886 4 C -0.592 4.592 5 S 1.431 4.569 6 C -0.658 4.658 7 O -0.819 6.819 8 N -0.830 5.830 9 C -0.068 4.068 10 S 2.789 3.211 11 O -0.957 6.957 12 O -0.971 6.971 13 C -0.873 4.873 14 C -0.010 4.010 15 C -0.279 4.279 16 C -0.076 4.076 17 C -0.228 4.228 18 C 0.169 3.831 19 C -0.559 4.559 20 H 0.135 0.865 21 C -0.180 4.180 22 N -0.401 5.401 23 Si 0.879 3.121 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.190 1.190 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.128 0.872 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.260 -7.219 6.881 10.226 hybrid contribution -0.964 2.623 2.086 3.487 sum 1.296 -4.597 8.967 10.160 Atomic orbital electron populations 1.22097 0.94230 1.02784 1.02278 1.20208 0.95295 0.95599 0.82193 0.88570 1.28016 1.20642 1.07708 1.02839 1.71140 0.88705 0.96564 1.00497 1.27798 1.08142 1.11341 1.18509 1.93199 1.75493 1.31865 1.81372 1.57630 1.69971 1.21197 1.34199 1.21868 1.00182 0.79711 1.04991 1.01537 0.73574 0.73082 0.72928 1.93482 1.75509 1.59679 1.67011 1.93561 1.68258 1.63612 1.71654 1.29893 1.28871 1.05343 1.23234 1.20367 0.94175 0.92236 0.94205 1.20486 1.03758 0.97698 1.05982 1.20860 0.95875 0.94781 0.96049 1.21356 1.05055 0.93223 1.03156 1.17022 0.87342 0.92807 0.85901 1.21436 1.00032 0.91971 1.42412 0.86469 1.27094 0.91170 1.06918 0.92771 1.70460 1.28690 1.16194 1.24794 0.83757 0.77463 0.72577 0.78342 1.19735 1.19498 1.19045 0.91701 0.92500 0.91188 0.88884 0.85916 0.87231 0.87972 0.90575 0.93260 0.91431 0.88102 0.87164 0.88480 0.88621 0.87235 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.17 37.16 0.34 -1.88 16 2 C 0.17 2.71 2.60 -67.93 -0.18 2.54 16 3 H 0.10 1.70 7.16 -51.93 -0.37 1.33 16 4 C -0.45 -5.47 5.34 37.16 0.20 -5.27 16 5 S 1.23 16.63 13.45 -107.50 -1.45 15.18 16 6 C -0.50 -4.87 10.74 101.05 1.09 -3.79 16 7 O -0.82 -16.56 18.14 -35.23 -0.64 -17.20 16 8 N -0.99 -16.95 2.75 -114.61 -0.32 -17.26 16 9 C 0.08 1.14 8.89 59.85 0.53 1.67 16 10 S 2.69 56.91 5.03 -107.50 -0.54 56.37 16 11 O -0.97 -21.86 14.67 -57.17 -0.84 -22.70 16 12 O -0.98 -22.09 15.75 -57.17 -0.90 -22.99 16 13 C -0.78 -18.09 5.97 -38.87 -0.23 -18.32 16 14 C 0.01 0.23 9.54 -39.66 -0.38 -0.15 16 15 C -0.26 -5.56 10.05 -39.29 -0.39 -5.96 16 16 C -0.06 -1.23 10.02 -39.66 -0.40 -1.63 16 17 C -0.21 -4.89 7.93 -38.87 -0.31 -5.20 16 18 C 0.17 4.19 5.19 -106.83 -0.55 3.64 16 19 C -0.53 -12.28 6.30 -37.74 -0.24 -12.51 16 20 H 0.12 2.70 4.06 -52.49 -0.21 2.49 16 21 C 0.04 0.98 4.99 -17.34 -0.09 0.89 16 22 N -0.78 -17.92 12.46 55.55 0.69 -17.23 16 23 Si 1.06 18.94 29.99 -169.99 -5.10 13.85 16 24 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 25 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 26 H -0.27 -4.29 7.11 56.52 0.40 -3.89 16 27 H 0.06 0.85 6.66 -51.93 -0.35 0.50 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.12 1.09 7.51 -51.93 -0.39 0.70 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.87 6.43 -51.93 -0.33 0.53 16 37 H 0.10 1.74 4.26 -51.93 -0.22 1.52 16 38 H 0.11 2.35 7.32 -52.49 -0.38 1.97 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.11 2.59 6.80 -52.48 -0.36 2.24 16 42 H 0.30 7.13 6.68 -40.82 -0.27 6.86 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -31.72 360.26 -9.76 -41.47 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.49 Total: 11.05 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: -0.61 Total: -45.97 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.38 Total: -34.49 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -2.38 Total: -62.89 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.10 Total: 13.85 kcal Atomic # 16 Polarization: 73.54 SS G_CDS: -1.99 Total: 71.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.72 -9.76 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.809 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds