Wall clock time and date at job start Wed Apr 1 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47410 * 2 1 4 4 C 1.53001 * 109.47102 * 119.99973 * 2 1 3 5 5 S 1.81404 * 109.46947 * 184.99792 * 4 2 1 6 6 C 1.81402 * 102.99757 * 179.97438 * 5 4 2 7 7 O 1.42100 * 109.46705 * 63.61422 * 5 4 2 8 8 N 1.46495 * 109.46995 * 240.00019 * 2 1 3 9 9 C 1.46501 * 120.00004 * 299.99597 * 8 2 1 10 10 S 1.65604 * 120.00442 * 120.00097 * 8 2 1 11 11 O 1.42098 * 106.40725 * 165.18662 * 10 8 2 12 12 O 1.42107 * 106.39886 * 32.26655 * 10 8 2 13 13 C 1.76199 * 107.21576 * 278.73227 * 10 8 2 14 14 C 1.37639 * 120.12932 * 114.52529 * 13 10 8 15 15 C 1.38610 * 120.24408 * 180.31347 * 14 13 10 16 16 C 1.38655 * 120.50646 * 359.67866 * 15 14 13 17 17 C 1.37600 * 120.24475 * 359.97438 * 16 15 14 18 18 C 1.40700 * 120.12526 * 294.21549 * 13 10 8 19 19 C 1.41393 * 120.24360 * 359.97438 * 18 13 10 20 20 H 1.07998 * 120.00340 * 328.66589 * 19 18 13 21 21 C 1.39945 * 119.99987 * 148.66516 * 19 18 13 22 22 N 1.30829 * 119.99988 * 338.11117 * 21 19 18 23 23 Si 1.86803 * 120.00024 * 158.11367 * 21 19 18 24 24 H 1.48504 * 109.47118 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.46974 * 299.99849 * 23 21 19 26 26 H 1.48494 * 109.47154 * 60.00018 * 23 21 19 27 27 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47149 * 299.99942 * 1 2 3 29 29 H 1.09003 * 109.47301 * 59.99826 * 1 2 3 30 30 H 1.08994 * 109.47144 * 304.99668 * 4 2 1 31 31 H 1.08994 * 109.47090 * 65.00215 * 4 2 1 32 32 H 1.08996 * 109.46936 * 60.00405 * 6 5 4 33 33 H 1.09000 * 109.46939 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47366 * 300.00075 * 6 5 4 35 35 H 1.09002 * 109.47477 * 269.06621 * 9 8 2 36 36 H 1.09003 * 109.46923 * 29.07257 * 9 8 2 37 37 H 1.09007 * 109.47094 * 149.06820 * 9 8 2 38 38 H 1.08000 * 119.87529 * 0.02562 * 14 13 10 39 39 H 1.08002 * 119.75008 * 179.69216 * 15 14 13 40 40 H 1.07999 * 119.88065 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.12564 * 180.02562 * 17 16 15 42 42 H 0.96997 * 120.00081 * 353.71431 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 3.8479 -0.5933 1.3256 6 6 4.2566 -1.4917 2.8476 7 8 4.2205 0.7707 1.4667 8 7 2.0183 -0.6906 -1.1961 9 6 1.6644 -2.0932 -1.4279 10 16 2.9704 0.1141 -2.2863 11 8 3.5554 -0.8786 -3.1178 12 8 3.7343 1.0499 -1.5378 13 6 1.8984 1.0586 -3.3176 14 6 1.9462 2.4338 -3.2883 15 6 1.0996 3.1792 -4.0938 16 6 0.2007 2.5505 -4.9419 17 6 0.1404 1.1768 -4.9928 18 6 0.9947 0.4097 -4.1790 19 6 0.9416 -1.0025 -4.2227 20 1 1.8340 -1.5825 -4.0392 21 6 -0.2674 -1.6489 -4.5039 22 7 -1.4022 -1.0282 -4.3073 23 14 -0.2609 -3.3980 -5.1599 24 1 -1.6586 -3.8511 -5.3752 25 1 0.4769 -3.4408 -6.4479 26 1 0.4042 -4.2922 -4.1785 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6054 -0.2617 2.1369 31 1 1.7517 -1.7715 1.2056 32 1 3.9128 -2.5226 2.7644 33 1 5.3361 -1.4793 2.9980 34 1 3.7665 -1.0125 3.6951 35 1 2.4244 -2.7375 -0.9860 36 1 0.6979 -2.3045 -0.9703 37 1 1.6075 -2.2812 -2.5002 38 1 2.6429 2.9340 -2.6318 39 1 1.1404 4.2579 -4.0607 40 1 -0.4541 3.1412 -5.5654 41 1 -0.5602 0.6891 -5.6544 42 1 -1.4108 -0.1564 -3.8822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:56 Heat of formation + Delta-G solvation = -112.902089 kcal Electronic energy + Delta-G solvation = -28002.462610 eV Core-core repulsion = 24200.269389 eV Total energy + Delta-G solvation = -3802.193221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.62404 -38.46827 -38.12064 -36.69140 -36.66942 -35.82818 -32.53537 -31.95900 -31.24629 -29.82543 -28.24194 -27.51481 -26.76491 -23.60555 -23.01380 -22.07530 -20.16247 -19.56568 -18.85113 -18.41832 -17.86077 -17.10099 -16.70948 -16.30714 -16.17314 -15.98169 -15.59559 -15.39821 -15.04254 -14.96637 -14.64749 -14.46995 -14.31729 -14.10156 -13.73701 -13.55633 -13.45887 -13.19742 -13.13008 -13.00546 -12.95216 -12.78664 -12.71938 -12.66329 -12.49867 -12.28048 -12.14799 -11.89664 -11.76479 -11.51592 -11.06756 -11.02638 -10.90671 -10.05474 -9.81649 -9.61086 -9.21414 -9.10724 -6.65935 -0.21271 0.43118 0.60877 0.87076 1.59891 1.68954 1.80642 1.88256 2.20306 2.34281 2.62117 2.90272 2.97405 3.34676 3.66919 3.73235 4.01741 4.08302 4.19421 4.30122 4.31148 4.36987 4.49939 4.57512 4.60363 4.79334 4.81140 4.85697 4.94807 5.01171 5.11369 5.12086 5.22185 5.28685 5.39779 5.45648 5.51655 5.58849 5.78714 5.85491 5.88480 6.03698 6.19127 6.61151 6.82072 8.00056 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.005482 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.891833 B = 5106.378606 C = 6135.751076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.169 3.831 3 H 0.064 0.936 4 C -0.438 4.438 5 S 1.217 4.783 6 C -0.481 4.481 7 O -0.906 6.906 8 N -0.985 5.985 9 C 0.061 3.939 10 S 2.704 3.296 11 O -0.985 6.985 12 O -1.000 7.000 13 C -0.801 4.801 14 C -0.009 4.009 15 C -0.263 4.263 16 C -0.057 4.057 17 C -0.230 4.230 18 C 0.151 3.849 19 C -0.541 4.541 20 H 0.117 0.883 21 C 0.023 3.977 22 N -0.793 5.793 23 Si 1.092 2.908 24 H -0.272 1.272 25 H -0.273 1.273 26 H -0.231 1.231 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.107 0.893 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -9.080 9.676 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.062 3.938 3 H 0.082 0.918 4 C -0.578 4.578 5 S 1.419 4.581 6 C -0.640 4.640 7 O -0.902 6.902 8 N -0.824 5.824 9 C -0.082 4.082 10 S 2.801 3.199 11 O -0.976 6.976 12 O -0.990 6.990 13 C -0.893 4.893 14 C -0.028 4.028 15 C -0.283 4.283 16 C -0.076 4.076 17 C -0.250 4.250 18 C 0.146 3.854 19 C -0.567 4.567 20 H 0.134 0.866 21 C -0.198 4.198 22 N -0.414 5.414 23 Si 0.908 3.092 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.154 1.154 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.185 0.815 32 H 0.170 0.830 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.643 -9.850 8.500 13.114 hybrid contribution -0.792 3.434 1.665 3.897 sum 0.851 -6.416 10.165 12.051 Atomic orbital electron populations 1.22057 0.93255 1.03861 1.01650 1.20308 0.95960 0.94588 0.82981 0.91791 1.27856 1.18615 1.10044 1.01270 1.70081 0.89702 0.94945 1.03398 1.27592 1.08802 1.12457 1.15150 1.93117 1.77748 1.35021 1.84293 1.57308 1.69657 1.21895 1.33492 1.22186 1.03129 0.78633 1.04260 1.01015 0.73541 0.72595 0.72773 1.93438 1.76256 1.59878 1.68013 1.93540 1.69107 1.64546 1.71816 1.30339 1.28944 1.06106 1.23948 1.20622 0.94843 0.92555 0.94802 1.20835 1.03110 0.99137 1.05225 1.21178 0.95947 0.94442 0.96031 1.21415 1.05619 0.94206 1.03766 1.17326 0.87924 0.93708 0.86425 1.21539 1.00481 0.91670 1.43030 0.86606 1.28217 0.90305 1.09428 0.91810 1.70552 1.29243 1.15846 1.25758 0.83368 0.77717 0.69528 0.78577 1.19695 1.19799 1.15420 0.89666 0.90514 0.94485 0.87421 0.81488 0.83014 0.87301 0.90622 0.88821 0.89045 0.90521 0.86846 0.85797 0.85752 0.88139 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.17 71.98 0.66 -3.39 16 2 C 0.17 5.07 2.60 44.99 0.12 5.18 16 3 H 0.06 2.35 7.16 -2.39 -0.02 2.33 16 4 C -0.44 -9.21 5.34 71.98 0.38 -8.83 16 5 S 1.22 31.05 13.45 -56.49 -0.76 30.29 16 6 C -0.48 -7.51 10.74 113.37 1.22 -6.30 16 7 O -0.91 -37.46 18.14 -148.98 -2.70 -40.16 16 8 N -0.98 -32.67 2.75 -516.51 -1.42 -34.09 16 9 C 0.06 1.65 8.89 127.77 1.14 2.78 16 10 S 2.70 116.72 5.03 -56.49 -0.28 116.43 16 11 O -0.99 -45.17 14.67 -128.00 -1.88 -47.04 16 12 O -1.00 -46.82 15.75 -128.00 -2.02 -48.84 16 13 C -0.80 -38.41 5.97 22.73 0.14 -38.28 16 14 C -0.01 -0.40 9.54 22.22 0.21 -0.18 16 15 C -0.26 -11.38 10.05 22.46 0.23 -11.15 16 16 C -0.06 -2.50 10.02 22.22 0.22 -2.27 16 17 C -0.23 -11.11 7.93 22.73 0.18 -10.93 16 18 C 0.15 7.46 5.19 -21.29 -0.11 7.35 16 19 C -0.54 -25.22 6.30 23.46 0.15 -25.07 16 20 H 0.12 5.37 4.06 -2.91 -0.01 5.36 16 21 C 0.02 0.99 4.99 85.26 0.43 1.41 16 22 N -0.79 -36.68 12.46 21.83 0.27 -36.41 16 23 Si 1.09 36.67 29.99 68.60 2.06 38.73 16 24 H -0.27 -9.09 7.11 99.48 0.71 -8.39 16 25 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 26 H -0.23 -6.49 7.11 99.48 0.71 -5.79 16 27 H 0.08 1.95 6.66 -2.39 -0.02 1.94 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.17 2.00 7.51 -2.39 -0.02 1.98 16 32 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.99 6.43 -2.39 -0.02 1.97 16 37 H 0.08 2.51 4.26 -2.38 -0.01 2.50 16 38 H 0.11 5.06 7.32 -2.91 -0.02 5.04 16 39 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.10 4.92 6.80 -2.91 -0.02 4.90 16 42 H 0.29 14.02 6.68 -92.71 -0.62 13.40 16 Total: -1.00 -73.77 360.26 -0.59 -74.36 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 1.19 Total: 36.42 kcal Atomic # 6 Polarization: -94.63 SS G_CDS: 4.95 Total: -89.68 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -1.15 Total: -70.51 kcal Atomic # 8 Polarization: -129.45 SS G_CDS: -6.60 Total: -136.04 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.06 Total: 38.73 kcal Atomic # 16 Polarization: 147.76 SS G_CDS: -1.04 Total: 146.72 kcal Total: -73.77 -0.59 -74.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.540 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds