Wall clock time and date at job start Wed Apr 1 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46806 * 2 1 4 4 C 1.52993 * 109.47343 * 239.99568 * 2 1 3 5 5 S 1.81398 * 109.47287 * 180.02562 * 4 2 1 6 6 C 1.81402 * 103.00089 * 179.97438 * 5 4 2 7 7 O 1.42100 * 109.47284 * 63.61150 * 5 4 2 8 8 N 1.46504 * 109.46706 * 119.99395 * 2 1 3 9 9 C 1.46495 * 119.99920 * 61.04351 * 8 2 1 10 10 S 1.65595 * 119.99890 * 241.03425 * 8 2 1 11 11 O 1.42103 * 106.40619 * 346.18132 * 10 8 2 12 12 O 1.42104 * 106.40640 * 213.25791 * 10 8 2 13 13 C 1.76203 * 107.21764 * 99.72193 * 10 8 2 14 14 C 1.37639 * 120.13132 * 108.44867 * 13 10 8 15 15 C 1.38610 * 120.24529 * 180.32159 * 14 13 10 16 16 C 1.38655 * 120.50551 * 359.67036 * 15 14 13 17 17 C 1.37599 * 120.24818 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.12493 * 288.14591 * 13 10 8 19 19 C 1.41402 * 120.24409 * 359.97291 * 18 13 10 20 20 H 1.07998 * 119.99941 * 36.08607 * 19 18 13 21 21 C 1.39944 * 119.99949 * 216.08508 * 19 18 13 22 22 N 1.30827 * 120.00210 * 19.60302 * 21 19 18 23 23 Si 1.86801 * 120.00022 * 199.60113 * 21 19 18 24 24 H 1.48495 * 109.47141 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47133 * 300.00424 * 23 21 19 26 26 H 1.48500 * 109.47047 * 59.99982 * 23 21 19 27 27 H 1.09004 * 109.47121 * 56.56230 * 1 2 3 28 28 H 1.09003 * 109.46994 * 176.56345 * 1 2 3 29 29 H 1.09000 * 109.47037 * 296.55668 * 1 2 3 30 30 H 1.09003 * 109.47001 * 300.00057 * 4 2 1 31 31 H 1.09000 * 109.47124 * 59.99707 * 4 2 1 32 32 H 1.09004 * 109.46947 * 59.99752 * 6 5 4 33 33 H 1.08994 * 109.47240 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47009 * 300.00131 * 6 5 4 35 35 H 1.09004 * 109.46829 * 269.99035 * 9 8 2 36 36 H 1.09002 * 109.47353 * 29.99466 * 9 8 2 37 37 H 1.09002 * 109.46999 * 149.99617 * 9 8 2 38 38 H 1.07994 * 119.87566 * 0.02562 * 14 13 10 39 39 H 1.08000 * 119.74489 * 179.68992 * 15 14 13 40 40 H 1.08003 * 119.87663 * 180.02562 * 16 15 14 41 41 H 1.07990 * 120.12850 * 180.02562 * 17 16 15 42 42 H 0.97002 * 119.99870 * 5.60622 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 16 3.8540 -0.7220 -1.2487 6 6 4.2621 -1.6064 -2.7790 7 8 4.3272 -1.4638 -0.1329 8 7 2.0183 -0.6905 1.1963 9 6 1.6832 -2.0995 1.4167 10 16 2.9490 0.1216 2.2992 11 8 3.3633 1.3246 1.6663 12 8 3.8600 -0.8292 2.8332 13 6 1.8909 0.5963 3.6258 14 6 1.9922 -0.0287 4.8479 15 6 1.1565 0.3382 5.8911 16 6 0.2150 1.3415 5.7192 17 6 0.1003 1.9842 4.5080 18 6 0.9434 1.6200 3.4417 19 6 0.8350 2.2740 2.1927 20 1 0.9777 1.7180 1.2779 21 6 0.5428 3.6416 2.1420 22 7 0.7435 4.3929 3.1940 23 14 -0.1339 4.3945 0.5720 24 1 -0.3574 5.8483 0.7766 25 1 0.8386 4.1942 -0.5322 26 1 -1.4203 3.7396 0.2235 27 1 -0.3633 0.5663 -0.8576 28 1 -0.3633 -1.0258 -0.0616 29 1 -0.3633 0.4595 0.9192 30 1 1.6767 -1.7490 -1.2490 31 1 1.6767 -0.2076 -2.1391 32 1 3.8435 -1.0706 -3.6310 33 1 5.3451 -1.6679 -2.8854 34 1 3.8428 -2.6118 -2.7404 35 1 0.7524 -2.1678 1.9799 36 1 1.5639 -2.5994 0.4555 37 1 2.4841 -2.5797 1.9791 38 1 2.7222 -0.8111 4.9931 39 1 1.2396 -0.1610 6.8452 40 1 -0.4307 1.6195 6.5391 41 1 -0.6334 2.7657 4.3764 42 1 1.1701 4.0206 3.9816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:00 Heat of formation + Delta-G solvation = -85.227142 kcal Electronic energy + Delta-G solvation = -28232.301621 eV Core-core repulsion = 24431.308475 eV Total energy + Delta-G solvation = -3800.993146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -37.87216 -37.25363 -36.17384 -35.41311 -34.71797 -33.96776 -31.28246 -30.18344 -29.49178 -29.01159 -27.21308 -25.98035 -25.22246 -21.82401 -21.19834 -20.74004 -18.45723 -17.98778 -17.32579 -17.18713 -16.16668 -15.70902 -15.15785 -14.91181 -14.54354 -14.52223 -14.22763 -14.00400 -13.76362 -13.50183 -13.24605 -13.15522 -12.81336 -12.65919 -12.51891 -12.20902 -12.11055 -11.93652 -11.64887 -11.55037 -11.41591 -11.19070 -11.10495 -11.07484 -10.90659 -10.64783 -10.52532 -10.48085 -10.42015 -9.94717 -9.74898 -9.31380 -9.19414 -8.48918 -8.19649 -8.07903 -7.74397 -7.36018 -4.77109 1.50474 1.61626 2.23301 2.65363 2.74218 3.08095 3.17112 3.26365 3.77846 3.92118 3.99775 4.41760 4.81199 4.87175 5.04091 5.08618 5.15625 5.21024 5.28821 5.47705 5.67716 5.72783 5.77559 5.82457 5.91332 5.94212 6.02008 6.07211 6.12123 6.22004 6.28983 6.55948 6.61363 6.66132 6.88964 7.14813 7.17122 7.30232 7.44320 7.58281 7.63828 7.86496 8.00115 8.38474 8.63881 9.91244 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.006247 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.307419 B = 4481.262105 C = 5888.021391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.122 0.878 4 C -0.457 4.457 5 S 1.232 4.768 6 C -0.495 4.495 7 O -0.826 6.826 8 N -0.997 5.997 9 C 0.100 3.900 10 S 2.700 3.300 11 O -0.961 6.961 12 O -0.980 6.980 13 C -0.778 4.778 14 C 0.008 3.992 15 C -0.258 4.258 16 C -0.059 4.059 17 C -0.203 4.203 18 C 0.168 3.832 19 C -0.514 4.514 20 H 0.099 0.901 21 C 0.045 3.955 22 N -0.785 5.785 23 Si 1.055 2.945 24 H -0.271 1.271 25 H -0.264 1.264 26 H -0.271 1.271 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -4.972 -11.846 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.054 3.946 3 H 0.140 0.860 4 C -0.595 4.595 5 S 1.429 4.571 6 C -0.652 4.652 7 O -0.821 6.821 8 N -0.833 5.833 9 C -0.046 4.046 10 S 2.798 3.202 11 O -0.951 6.951 12 O -0.970 6.970 13 C -0.872 4.872 14 C -0.012 4.012 15 C -0.279 4.279 16 C -0.077 4.077 17 C -0.223 4.223 18 C 0.163 3.837 19 C -0.541 4.541 20 H 0.116 0.884 21 C -0.178 4.178 22 N -0.407 5.407 23 Si 0.877 3.123 24 H -0.195 1.195 25 H -0.188 1.188 26 H -0.196 1.196 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.132 -3.040 -11.905 12.287 hybrid contribution -1.070 -3.657 1.200 3.995 sum -1.202 -6.696 -10.704 12.684 Atomic orbital electron populations 1.22290 0.94205 1.01889 1.03967 1.20543 0.95624 0.96871 0.81589 0.86008 1.28109 1.20782 1.06342 1.04299 1.71120 0.87141 1.13926 0.84939 1.27716 1.08221 1.10487 1.18735 1.93251 1.72811 1.73348 1.42661 1.57684 1.70952 1.19802 1.34843 1.21273 1.00643 0.81375 1.01328 1.01294 0.73246 0.72421 0.73276 1.93492 1.80563 1.45442 1.75628 1.93455 1.60707 1.63091 1.79774 1.30251 1.23129 1.19328 1.14473 1.20370 0.94425 0.94545 0.91865 1.20487 1.03719 1.04975 0.98687 1.20858 0.96095 0.94669 0.96121 1.21330 1.02329 1.04156 0.94494 1.17065 0.86102 0.87871 0.92668 1.21119 1.41848 0.97154 0.93992 0.88357 1.26998 0.93034 0.94037 1.03729 1.70425 1.25459 1.39984 1.04790 0.83794 0.77548 0.77225 0.73729 1.19529 1.18848 1.19614 0.91782 0.92968 0.89585 0.89206 0.85705 0.87327 0.87987 0.90570 0.93446 0.92326 0.90396 0.87351 0.88464 0.88557 0.87347 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.56 37.16 0.32 -2.04 16 2 C 0.16 2.55 1.72 -67.93 -0.12 2.43 16 3 H 0.12 2.05 5.30 -51.93 -0.28 1.78 16 4 C -0.46 -5.32 5.26 37.15 0.20 -5.13 16 5 S 1.23 15.63 13.68 -107.50 -1.47 14.16 16 6 C -0.49 -4.52 10.74 101.05 1.09 -3.43 16 7 O -0.83 -15.90 16.30 -35.23 -0.57 -16.47 16 8 N -1.00 -18.90 1.80 -114.61 -0.21 -19.10 16 9 C 0.10 1.68 9.53 59.84 0.57 2.25 16 10 S 2.70 63.24 4.67 -107.50 -0.50 62.74 16 11 O -0.96 -23.62 14.60 -57.17 -0.83 -24.46 16 12 O -0.98 -25.04 15.81 -57.17 -0.90 -25.94 16 13 C -0.78 -19.11 5.99 -38.87 -0.23 -19.34 16 14 C 0.01 0.18 9.53 -39.66 -0.38 -0.20 16 15 C -0.26 -5.69 10.05 -39.29 -0.39 -6.09 16 16 C -0.06 -1.29 10.02 -39.66 -0.40 -1.69 16 17 C -0.20 -4.89 7.95 -38.87 -0.31 -5.20 16 18 C 0.17 4.19 5.08 -106.82 -0.54 3.65 16 19 C -0.51 -12.32 6.35 -37.74 -0.24 -12.56 16 20 H 0.10 2.14 2.14 -52.49 -0.11 2.02 16 21 C 0.05 1.07 5.02 -17.34 -0.09 0.99 16 22 N -0.78 -19.87 12.66 55.55 0.70 -19.16 16 23 Si 1.06 19.55 29.98 -169.99 -5.10 14.45 16 24 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 25 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 26 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.67 7.81 -51.93 -0.41 0.27 16 29 H 0.09 1.46 6.41 -51.93 -0.33 1.13 16 30 H 0.09 1.01 6.63 -51.92 -0.34 0.67 16 31 H 0.12 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.83 6.37 -51.93 -0.33 0.50 16 37 H 0.08 1.43 7.14 -51.93 -0.37 1.06 16 38 H 0.11 2.40 7.34 -52.49 -0.39 2.02 16 39 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 40 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 41 H 0.11 2.60 7.13 -52.49 -0.37 2.22 16 42 H 0.30 7.93 6.71 -40.82 -0.27 7.66 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -33.88 354.56 -9.45 -43.33 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.38 Total: 11.46 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: -0.53 Total: -46.34 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.50 Total: -38.27 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -2.31 Total: -66.87 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.10 Total: 14.45 kcal Atomic # 16 Polarization: 78.87 SS G_CDS: -1.97 Total: 76.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.88 -9.45 -43.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.898 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds