Wall clock time and date at job start Wed Apr 1 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46806 * 2 1 4 4 C 1.52993 * 109.47343 * 239.99568 * 2 1 3 5 5 S 1.81398 * 109.47287 * 180.02562 * 4 2 1 6 6 C 1.81402 * 103.00089 * 179.97438 * 5 4 2 7 7 O 1.42100 * 109.47284 * 63.61150 * 5 4 2 8 8 N 1.46504 * 109.46706 * 119.99395 * 2 1 3 9 9 C 1.46495 * 119.99920 * 61.04351 * 8 2 1 10 10 S 1.65595 * 119.99890 * 241.03425 * 8 2 1 11 11 O 1.42103 * 106.40619 * 346.18132 * 10 8 2 12 12 O 1.42104 * 106.40640 * 213.25791 * 10 8 2 13 13 C 1.76203 * 107.21764 * 99.72193 * 10 8 2 14 14 C 1.37639 * 120.13132 * 108.44867 * 13 10 8 15 15 C 1.38610 * 120.24529 * 180.32159 * 14 13 10 16 16 C 1.38655 * 120.50551 * 359.67036 * 15 14 13 17 17 C 1.37599 * 120.24818 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.12493 * 288.14591 * 13 10 8 19 19 C 1.41402 * 120.24409 * 359.97291 * 18 13 10 20 20 H 1.07998 * 119.99941 * 36.08607 * 19 18 13 21 21 C 1.39944 * 119.99949 * 216.08508 * 19 18 13 22 22 N 1.30827 * 120.00210 * 19.60302 * 21 19 18 23 23 Si 1.86801 * 120.00022 * 199.60113 * 21 19 18 24 24 H 1.48495 * 109.47141 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47133 * 300.00424 * 23 21 19 26 26 H 1.48500 * 109.47047 * 59.99982 * 23 21 19 27 27 H 1.09004 * 109.47121 * 56.56230 * 1 2 3 28 28 H 1.09003 * 109.46994 * 176.56345 * 1 2 3 29 29 H 1.09000 * 109.47037 * 296.55668 * 1 2 3 30 30 H 1.09003 * 109.47001 * 300.00057 * 4 2 1 31 31 H 1.09000 * 109.47124 * 59.99707 * 4 2 1 32 32 H 1.09004 * 109.46947 * 59.99752 * 6 5 4 33 33 H 1.08994 * 109.47240 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47009 * 300.00131 * 6 5 4 35 35 H 1.09004 * 109.46829 * 269.99035 * 9 8 2 36 36 H 1.09002 * 109.47353 * 29.99466 * 9 8 2 37 37 H 1.09002 * 109.46999 * 149.99617 * 9 8 2 38 38 H 1.07994 * 119.87566 * 0.02562 * 14 13 10 39 39 H 1.08000 * 119.74489 * 179.68992 * 15 14 13 40 40 H 1.08003 * 119.87663 * 180.02562 * 16 15 14 41 41 H 1.07990 * 120.12850 * 180.02562 * 17 16 15 42 42 H 0.97002 * 119.99870 * 5.60622 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 16 3.8540 -0.7220 -1.2487 6 6 4.2621 -1.6064 -2.7790 7 8 4.3272 -1.4638 -0.1329 8 7 2.0183 -0.6905 1.1963 9 6 1.6832 -2.0995 1.4167 10 16 2.9490 0.1216 2.2992 11 8 3.3633 1.3246 1.6663 12 8 3.8600 -0.8292 2.8332 13 6 1.8909 0.5963 3.6258 14 6 1.9922 -0.0287 4.8479 15 6 1.1565 0.3382 5.8911 16 6 0.2150 1.3415 5.7192 17 6 0.1003 1.9842 4.5080 18 6 0.9434 1.6200 3.4417 19 6 0.8350 2.2740 2.1927 20 1 0.9777 1.7180 1.2779 21 6 0.5428 3.6416 2.1420 22 7 0.7435 4.3929 3.1940 23 14 -0.1339 4.3945 0.5720 24 1 -0.3574 5.8483 0.7766 25 1 0.8386 4.1942 -0.5322 26 1 -1.4203 3.7396 0.2235 27 1 -0.3633 0.5663 -0.8576 28 1 -0.3633 -1.0258 -0.0616 29 1 -0.3633 0.4595 0.9192 30 1 1.6767 -1.7490 -1.2490 31 1 1.6767 -0.2076 -2.1391 32 1 3.8435 -1.0706 -3.6310 33 1 5.3451 -1.6679 -2.8854 34 1 3.8428 -2.6118 -2.7404 35 1 0.7524 -2.1678 1.9799 36 1 1.5639 -2.5994 0.4555 37 1 2.4841 -2.5797 1.9791 38 1 2.7222 -0.8111 4.9931 39 1 1.2396 -0.1610 6.8452 40 1 -0.4307 1.6195 6.5391 41 1 -0.6334 2.7657 4.3764 42 1 1.1701 4.0206 3.9816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:59 Heat of formation + Delta-G solvation = -109.687462 kcal Electronic energy + Delta-G solvation = -28233.362300 eV Core-core repulsion = 24431.308475 eV Total energy + Delta-G solvation = -3802.053825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.65165 -38.62294 -38.01014 -36.63421 -36.56252 -35.75973 -32.55135 -31.98723 -31.31022 -29.80101 -28.25229 -27.36314 -26.98433 -23.61560 -23.01114 -22.04863 -20.17442 -19.59577 -18.91467 -18.35956 -17.90829 -17.15632 -16.68024 -16.24445 -15.99950 -15.85201 -15.65260 -15.47506 -15.17379 -15.01365 -14.70822 -14.60053 -14.20176 -13.94689 -13.71253 -13.53188 -13.48842 -13.24008 -13.14863 -12.97244 -12.87004 -12.78346 -12.72383 -12.62685 -12.47025 -12.22292 -12.15297 -11.88659 -11.76562 -11.52113 -11.10224 -10.94916 -10.89919 -10.05770 -9.87699 -9.59154 -9.20346 -9.06037 -6.62339 -0.23851 0.39115 0.68471 0.84139 1.58881 1.72172 1.85226 1.86299 2.23008 2.41872 2.65579 2.93927 3.09080 3.33123 3.63616 3.74712 4.11279 4.12724 4.18092 4.30874 4.34016 4.41577 4.51818 4.55884 4.59022 4.65385 4.75888 4.79913 4.82999 4.95195 5.00165 5.09848 5.15445 5.32137 5.36537 5.46274 5.53682 5.55685 5.73484 5.80906 5.85503 6.03577 6.17645 6.57554 6.84055 8.03228 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.006247 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.307419 B = 4481.262105 C = 5888.021391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.108 0.892 4 C -0.442 4.442 5 S 1.216 4.784 6 C -0.473 4.473 7 O -0.903 6.903 8 N -0.992 5.992 9 C 0.097 3.903 10 S 2.709 3.291 11 O -0.982 6.982 12 O -1.012 7.012 13 C -0.800 4.800 14 C -0.013 4.013 15 C -0.257 4.257 16 C -0.058 4.058 17 C -0.222 4.222 18 C 0.146 3.854 19 C -0.530 4.530 20 H 0.118 0.882 21 C 0.008 3.992 22 N -0.812 5.812 23 Si 1.090 2.910 24 H -0.278 1.278 25 H -0.235 1.235 26 H -0.243 1.243 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.178 0.822 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -5.559 -15.045 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.126 0.874 4 C -0.581 4.581 5 S 1.418 4.582 6 C -0.633 4.633 7 O -0.898 6.898 8 N -0.831 5.831 9 C -0.048 4.048 10 S 2.806 3.194 11 O -0.972 6.972 12 O -1.002 7.002 13 C -0.893 4.893 14 C -0.032 4.032 15 C -0.277 4.277 16 C -0.076 4.076 17 C -0.242 4.242 18 C 0.141 3.859 19 C -0.557 4.557 20 H 0.136 0.864 21 C -0.209 4.209 22 N -0.434 5.434 23 Si 0.904 3.096 24 H -0.203 1.203 25 H -0.158 1.158 26 H -0.166 1.166 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.195 0.805 32 H 0.168 0.832 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.131 0.869 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.119 0.881 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.836 -3.635 -15.057 15.597 hybrid contribution -0.541 -3.562 2.134 4.187 sum -2.377 -7.197 -12.922 14.981 Atomic orbital electron populations 1.22284 0.92754 1.03280 1.03859 1.20907 0.96846 0.96597 0.81839 0.87399 1.27983 1.18891 1.07137 1.04128 1.70198 0.87990 1.14702 0.85268 1.27506 1.08818 1.10184 1.16759 1.93181 1.75071 1.75198 1.46399 1.57356 1.70670 1.20206 1.34830 1.21385 1.00091 0.80368 1.02934 1.00757 0.73326 0.71959 0.73324 1.93441 1.81306 1.46601 1.75892 1.93402 1.62358 1.63746 1.80712 1.30518 1.23313 1.19858 1.15654 1.20634 0.95234 0.95081 0.92287 1.20875 1.02754 1.04582 0.99501 1.21222 0.96189 0.93893 0.96340 1.21415 1.02645 1.04651 0.95513 1.17396 0.86503 0.88368 0.93645 1.21496 1.41974 0.97679 0.94529 0.86427 1.28545 0.92005 0.94583 1.05777 1.70557 1.27496 1.40248 1.05068 0.83479 0.78969 0.76196 0.70954 1.20314 1.15758 1.16610 0.88369 0.91321 0.92714 0.88186 0.80454 0.83174 0.87617 0.90876 0.92406 0.89224 0.92727 0.86942 0.85321 0.85305 0.88089 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 8.56 71.98 0.62 -3.53 16 2 C 0.14 4.25 1.72 44.99 0.08 4.32 16 3 H 0.11 3.49 5.30 -2.39 -0.01 3.48 16 4 C -0.44 -8.59 5.26 71.98 0.38 -8.21 16 5 S 1.22 28.88 13.68 -56.49 -0.77 28.10 16 6 C -0.47 -6.87 10.74 113.37 1.22 -5.66 16 7 O -0.90 -35.36 16.30 -148.98 -2.43 -37.79 16 8 N -0.99 -37.35 1.80 -516.51 -0.93 -38.27 16 9 C 0.10 3.25 9.53 127.77 1.22 4.47 16 10 S 2.71 131.03 4.67 -56.49 -0.26 130.77 16 11 O -0.98 -49.96 14.60 -128.00 -1.87 -51.83 16 12 O -1.01 -54.20 15.81 -128.00 -2.02 -56.22 16 13 C -0.80 -40.57 5.99 22.73 0.14 -40.43 16 14 C -0.01 -0.61 9.53 22.22 0.21 -0.40 16 15 C -0.26 -11.24 10.05 22.46 0.23 -11.01 16 16 C -0.06 -2.54 10.02 22.22 0.22 -2.32 16 17 C -0.22 -10.94 7.95 22.73 0.18 -10.76 16 18 C 0.15 7.48 5.08 -21.29 -0.11 7.37 16 19 C -0.53 -25.73 6.35 23.46 0.15 -25.58 16 20 H 0.12 5.09 2.14 -2.91 -0.01 5.08 16 21 C 0.01 0.37 5.02 85.26 0.43 0.80 16 22 N -0.81 -42.31 12.66 21.83 0.28 -42.04 16 23 Si 1.09 37.61 29.98 68.60 2.06 39.67 16 24 H -0.28 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.23 -6.96 7.11 99.48 0.71 -6.25 16 26 H -0.24 -7.24 7.11 99.48 0.71 -6.53 16 27 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 1.51 7.81 -2.39 -0.02 1.49 16 29 H 0.05 1.77 6.41 -2.39 -0.02 1.76 16 30 H 0.10 1.80 6.63 -2.39 -0.02 1.79 16 31 H 0.18 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 2.38 6.37 -2.39 -0.02 2.36 16 37 H 0.05 2.07 7.14 -2.39 -0.02 2.05 16 38 H 0.11 5.18 7.34 -2.91 -0.02 5.15 16 39 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 40 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.10 5.01 7.13 -2.92 -0.02 4.99 16 42 H 0.28 15.56 6.71 -92.71 -0.62 14.93 16 Total: -1.00 -79.51 354.56 0.19 -79.32 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: 1.19 Total: 39.23 kcal Atomic # 6 Polarization: -95.89 SS G_CDS: 4.95 Total: -90.93 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -0.65 Total: -80.31 kcal Atomic # 8 Polarization: -139.52 SS G_CDS: -6.32 Total: -145.84 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.06 Total: 39.67 kcal Atomic # 16 Polarization: 159.91 SS G_CDS: -1.04 Total: 158.87 kcal Total: -79.51 0.19 -79.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.369 kcal (2) G-P(sol) polarization free energy of solvation -79.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds