Wall clock time and date at job start Wed Apr 1 2020 02:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35849 * 116.99842 * 2 1 4 4 C 1.38864 * 119.92659 * 179.97438 * 3 2 1 5 5 C 1.37872 * 120.06888 * 179.97438 * 4 3 2 6 6 C 1.39460 * 119.93193 * 359.97438 * 5 4 3 7 7 C 1.48176 * 120.07476 * 179.97438 * 6 5 4 8 8 N 1.32828 * 120.16039 * 224.38764 * 7 6 5 9 9 C 1.32129 * 119.97239 * 180.27721 * 8 7 6 10 10 C 1.38300 * 120.29414 * 359.75325 * 9 8 7 11 11 N 1.32259 * 120.32584 * 359.97438 * 10 9 8 12 12 C 1.32497 * 120.02160 * 359.97438 * 11 10 9 13 13 N 1.39228 * 120.15121 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99782 * 356.40025 * 13 12 11 15 15 O 1.21275 * 120.00391 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00135 * 179.71996 * 14 13 12 17 17 S 1.80996 * 109.47625 * 180.27396 * 16 14 13 18 18 C 1.76200 * 100.00310 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99495 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99975 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99831 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00040 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47193 * 90.00287 * 22 20 18 24 24 H 1.48507 * 109.46953 * 210.00325 * 22 20 18 25 25 H 1.48500 * 109.47337 * 329.99949 * 22 20 18 26 26 C 1.39468 * 119.85489 * 0.27465 * 6 5 4 27 27 C 1.37876 * 119.92498 * 359.46868 * 26 6 5 28 28 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47677 * 300.00875 * 1 2 3 30 30 H 1.09002 * 109.46902 * 60.01216 * 1 2 3 31 31 H 1.07995 * 119.96527 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.03315 * 180.02562 * 5 4 3 33 33 H 1.07993 * 119.85063 * 179.73624 * 9 8 7 34 34 H 1.07999 * 119.83743 * 179.97438 * 10 9 8 35 35 H 0.96994 * 120.00051 * 176.39434 * 13 12 11 36 36 H 1.08997 * 109.47450 * 300.27800 * 16 14 13 37 37 H 1.09005 * 109.46871 * 60.27106 * 16 14 13 38 38 H 0.97006 * 120.00182 * 179.97438 * 21 20 18 39 39 H 1.07996 * 120.04016 * 179.72120 * 26 6 5 40 40 H 1.08002 * 119.96374 * 180.23462 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 3.4326 1.2814 0.0005 5 6 4.0615 2.5083 0.0000 6 6 3.3034 3.6789 -0.0016 7 6 3.9761 4.9991 -0.0016 8 7 3.5468 5.9668 0.8006 9 6 4.1459 7.1445 0.7937 10 6 5.2232 7.3742 -0.0426 11 7 5.6638 6.4173 -0.8423 12 6 5.0731 5.2312 -0.8449 13 7 5.5350 4.2218 -1.6853 14 6 6.5379 4.4715 -2.5503 15 8 7.0377 5.5754 -2.5971 16 6 7.0421 3.3772 -3.4555 17 16 8.3860 4.0172 -4.4852 18 6 8.7729 2.5722 -5.4163 19 1 8.2228 1.6582 -5.2482 20 6 9.7854 2.6084 -6.3650 21 7 10.0747 1.5288 -7.0602 22 14 10.7373 4.1892 -6.6552 23 1 11.9181 4.2282 -5.7557 24 1 11.1898 4.2422 -8.0687 25 1 9.8608 5.3540 -6.3722 26 6 1.9108 3.6041 0.0031 27 6 1.2880 2.3740 -0.0017 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 4.0191 0.3746 0.0014 32 1 5.1401 2.5628 0.0000 33 1 3.7926 7.9312 1.4436 34 1 5.7072 8.3397 -0.0426 35 1 5.1351 3.3390 -1.6481 36 1 7.4102 2.5474 -2.8523 37 1 6.2292 3.0301 -4.0934 38 1 10.7821 1.5542 -7.7235 39 1 1.3208 4.5087 0.0064 40 1 0.2095 2.3155 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:00 Heat of formation + Delta-G solvation = 23.424475 kcal Electronic energy + Delta-G solvation = -26210.178320 eV Core-core repulsion = 22310.745462 eV Total energy + Delta-G solvation = -3899.432858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62870 -40.34495 -39.25979 -37.88794 -35.28847 -34.19816 -32.47251 -31.83260 -31.46108 -29.89959 -28.90471 -27.62763 -25.67127 -25.07294 -24.10218 -22.89051 -21.94759 -20.73339 -18.78621 -18.53776 -17.71418 -17.36837 -17.27534 -16.46701 -16.12489 -16.09560 -15.68344 -15.28298 -15.02724 -14.75920 -14.62206 -14.17433 -14.06222 -13.90469 -13.68671 -13.50761 -13.04662 -12.82705 -12.54595 -12.47499 -12.22050 -11.68106 -11.59089 -11.42637 -11.30854 -11.22988 -11.03287 -10.69356 -10.64890 -10.05072 -9.84199 -9.42901 -9.03973 -9.02343 -8.87739 -8.56479 -8.11056 -6.97387 -6.31899 -4.04784 0.30883 0.89538 0.96631 1.28960 2.46516 2.79597 2.86111 3.01939 3.28217 3.31258 3.48160 3.50953 3.65840 3.79828 4.08254 4.21254 4.30437 4.41658 4.46393 4.61260 4.70908 4.74848 4.78621 4.89923 4.96713 5.05435 5.07146 5.08189 5.11505 5.20919 5.25489 5.63656 5.63939 5.77066 5.85111 5.90258 5.95225 6.11333 6.25857 6.37566 6.90334 6.96815 7.27184 7.73848 7.91016 8.25699 8.38723 9.13887 10.77206 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.002945 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.480041 B = 9505.220041 C =11939.880830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.137 3.863 4 C -0.141 4.141 5 C -0.081 4.081 6 C -0.075 4.075 7 C 0.084 3.916 8 N -0.406 5.406 9 C 0.006 3.994 10 C 0.088 3.912 11 N -0.431 5.431 12 C 0.340 3.660 13 N -0.659 5.659 14 C 0.517 3.483 15 O -0.446 6.446 16 C -0.125 4.125 17 S -0.135 6.135 18 C -0.523 4.523 19 H 0.090 0.910 20 C 0.097 3.903 21 N -0.879 5.879 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.039 4.039 27 C -0.206 4.206 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.419 0.581 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.271 0.729 39 H 0.131 0.869 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.792 2.591 18.272 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.091 3.909 4 C -0.160 4.160 5 C -0.100 4.100 6 C -0.077 4.077 7 C -0.061 4.061 8 N -0.119 5.119 9 C -0.155 4.155 10 C -0.073 4.073 11 N -0.151 5.151 12 C 0.104 3.896 13 N -0.310 5.310 14 C 0.302 3.698 15 O -0.312 6.312 16 C -0.276 4.276 17 S 0.091 5.909 18 C -0.670 4.670 19 H 0.108 0.892 20 C -0.112 4.112 21 N -0.515 5.515 22 Si 0.680 3.320 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.058 4.058 27 C -0.224 4.224 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.188 0.812 34 H 0.190 0.810 35 H 0.260 0.740 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.149 0.851 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.666 4.109 17.937 26.932 hybrid contribution -0.486 -1.007 -0.184 1.133 sum -20.151 3.102 17.753 27.035 Atomic orbital electron populations 1.23108 0.78105 1.04210 1.01526 1.86089 1.21631 1.26752 1.88229 1.19176 0.92374 0.84274 0.95074 1.20363 0.91439 0.98508 1.05668 1.21063 0.99954 0.90829 0.98194 1.18142 0.93301 0.89719 1.06518 1.20024 0.94753 0.94769 0.96599 1.68388 1.26940 0.99911 1.16685 1.23547 0.95960 0.95161 1.00848 1.23832 0.94005 0.98697 0.90784 1.68591 1.27459 0.98887 1.20116 1.19428 0.90758 0.89164 0.90242 1.44177 1.36757 1.13363 1.36667 1.20717 0.78776 0.90346 0.79992 1.90810 1.53089 1.23099 1.64195 1.23314 1.04081 0.99586 1.00579 1.84835 1.40691 1.20130 1.45232 1.22293 1.23784 0.96580 1.24351 0.89227 1.24699 0.95722 0.96682 0.94130 1.69935 1.30476 1.27869 1.23229 0.86750 0.81959 0.84741 0.78501 1.19153 1.19875 1.15902 1.20953 0.92989 0.97384 0.94494 1.21228 1.00332 0.91979 1.08884 0.88047 0.92490 0.92391 0.84161 0.84691 0.81193 0.80980 0.73960 0.87963 0.87952 0.91877 0.85060 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.77 10.49 -19.27 -0.20 -2.98 16 3 C 0.14 1.27 6.69 -39.12 -0.26 1.01 16 4 C -0.14 -1.31 9.97 -39.48 -0.39 -1.70 16 5 C -0.08 -0.79 7.67 -39.26 -0.30 -1.09 16 6 C -0.08 -0.81 5.41 -104.90 -0.57 -1.38 16 7 C 0.08 1.05 6.38 -82.58 -0.53 0.52 16 8 N -0.41 -4.79 10.31 -9.47 -0.10 -4.89 16 9 C 0.01 0.06 11.21 -17.40 -0.19 -0.14 16 10 C 0.09 1.00 11.21 -17.34 -0.19 0.80 16 11 N -0.43 -6.76 8.06 -11.94 -0.10 -6.86 16 12 C 0.34 4.94 7.32 -154.27 -1.13 3.81 16 13 N -0.66 -9.42 4.87 -11.13 -0.05 -9.47 16 14 C 0.52 9.36 7.81 -10.99 -0.09 9.27 16 15 O -0.45 -9.69 14.14 5.56 0.08 -9.61 16 16 C -0.13 -2.36 6.16 36.01 0.22 -2.14 16 17 S -0.13 -3.36 18.55 -107.50 -1.99 -5.36 16 18 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.27 13.97 55.49 0.78 -25.50 16 22 Si 0.86 21.58 27.74 -169.99 -4.71 16.87 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 26 C -0.04 -0.37 9.66 -39.26 -0.38 -0.75 16 27 C -0.21 -1.72 9.02 -39.48 -0.36 -2.07 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.14 1.22 6.84 -52.49 -0.36 0.86 16 33 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.42 4.79 5.25 -40.82 -0.21 4.58 16 36 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 37 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.13 0.79 6.28 -52.49 -0.33 0.46 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -36.31 359.60 -8.08 -44.40 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.23 Total: 2.51 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.96 Total: -4.53 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.53 Total: -46.72 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.12 Total: -12.59 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.31 -8.08 -44.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.822 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds