Wall clock time and date at job start Wed Apr 1 2020 02:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35849 * 116.99842 * 2 1 4 4 C 1.38864 * 119.92659 * 179.97438 * 3 2 1 5 5 C 1.37872 * 120.06888 * 179.97438 * 4 3 2 6 6 C 1.39460 * 119.93193 * 359.97438 * 5 4 3 7 7 C 1.48176 * 120.07476 * 179.97438 * 6 5 4 8 8 N 1.32828 * 120.16039 * 224.38764 * 7 6 5 9 9 C 1.32129 * 119.97239 * 180.27721 * 8 7 6 10 10 C 1.38300 * 120.29414 * 359.75325 * 9 8 7 11 11 N 1.32259 * 120.32584 * 359.97438 * 10 9 8 12 12 C 1.32497 * 120.02160 * 359.97438 * 11 10 9 13 13 N 1.39228 * 120.15121 * 180.02562 * 12 11 10 14 14 C 1.34771 * 119.99782 * 356.40025 * 13 12 11 15 15 O 1.21275 * 120.00391 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00135 * 179.71996 * 14 13 12 17 17 S 1.80996 * 109.47625 * 180.27396 * 16 14 13 18 18 C 1.76200 * 100.00310 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99495 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99975 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99831 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00040 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47193 * 90.00287 * 22 20 18 24 24 H 1.48507 * 109.46953 * 210.00325 * 22 20 18 25 25 H 1.48500 * 109.47337 * 329.99949 * 22 20 18 26 26 C 1.39468 * 119.85489 * 0.27465 * 6 5 4 27 27 C 1.37876 * 119.92498 * 359.46868 * 26 6 5 28 28 H 1.09005 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47677 * 300.00875 * 1 2 3 30 30 H 1.09002 * 109.46902 * 60.01216 * 1 2 3 31 31 H 1.07995 * 119.96527 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.03315 * 180.02562 * 5 4 3 33 33 H 1.07993 * 119.85063 * 179.73624 * 9 8 7 34 34 H 1.07999 * 119.83743 * 179.97438 * 10 9 8 35 35 H 0.96994 * 120.00051 * 176.39434 * 13 12 11 36 36 H 1.08997 * 109.47450 * 300.27800 * 16 14 13 37 37 H 1.09005 * 109.46871 * 60.27106 * 16 14 13 38 38 H 0.97006 * 120.00182 * 179.97438 * 21 20 18 39 39 H 1.07996 * 120.04016 * 179.72120 * 26 6 5 40 40 H 1.08002 * 119.96374 * 180.23462 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 3.4326 1.2814 0.0005 5 6 4.0615 2.5083 0.0000 6 6 3.3034 3.6789 -0.0016 7 6 3.9761 4.9991 -0.0016 8 7 3.5468 5.9668 0.8006 9 6 4.1459 7.1445 0.7937 10 6 5.2232 7.3742 -0.0426 11 7 5.6638 6.4173 -0.8423 12 6 5.0731 5.2312 -0.8449 13 7 5.5350 4.2218 -1.6853 14 6 6.5379 4.4715 -2.5503 15 8 7.0377 5.5754 -2.5971 16 6 7.0421 3.3772 -3.4555 17 16 8.3860 4.0172 -4.4852 18 6 8.7729 2.5722 -5.4163 19 1 8.2228 1.6582 -5.2482 20 6 9.7854 2.6084 -6.3650 21 7 10.0747 1.5288 -7.0602 22 14 10.7373 4.1892 -6.6552 23 1 11.9181 4.2282 -5.7557 24 1 11.1898 4.2422 -8.0687 25 1 9.8608 5.3540 -6.3722 26 6 1.9108 3.6041 0.0031 27 6 1.2880 2.3740 -0.0017 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 4.0191 0.3746 0.0014 32 1 5.1401 2.5628 0.0000 33 1 3.7926 7.9312 1.4436 34 1 5.7072 8.3397 -0.0426 35 1 5.1351 3.3390 -1.6481 36 1 7.4102 2.5474 -2.8523 37 1 6.2292 3.0301 -4.0934 38 1 10.7821 1.5542 -7.7235 39 1 1.3208 4.5087 0.0064 40 1 0.2095 2.3155 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619573376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:59 Heat of formation + Delta-G solvation = -0.908875 kcal Electronic energy + Delta-G solvation = -26211.233493 eV Core-core repulsion = 22310.745462 eV Total energy + Delta-G solvation = -3900.488031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.59599 -41.02097 -40.53694 -38.57592 -36.46997 -35.12844 -34.67793 -32.80708 -32.21096 -31.00786 -29.91791 -28.15177 -27.86767 -26.00278 -25.04313 -23.59797 -22.74187 -21.95522 -20.17533 -19.30178 -19.17111 -18.66116 -18.02536 -17.39704 -17.18961 -17.11224 -16.82330 -16.65729 -16.21744 -15.82470 -15.73392 -15.51230 -15.06590 -14.85199 -14.80362 -14.66271 -14.30171 -13.92884 -13.67670 -13.36204 -13.10288 -13.03781 -12.85710 -12.75246 -12.60644 -12.53765 -12.18752 -11.89237 -11.85408 -11.64458 -11.34292 -11.17695 -10.57358 -10.12485 -10.01701 -9.80913 -9.03091 -8.92014 -8.51967 -6.23424 -0.56049 0.00123 0.24343 0.48333 0.88793 1.31204 1.39540 1.45590 1.50117 1.83084 2.24083 2.32124 2.53197 2.63216 2.76769 2.86413 2.94987 3.13670 3.34574 3.69808 3.78168 3.82783 4.02162 4.12458 4.14431 4.18862 4.32240 4.37710 4.38792 4.42512 4.46632 4.55725 4.76839 4.93573 4.97079 5.07264 5.24190 5.38267 5.42970 5.59170 5.70539 5.83260 6.11863 6.31776 6.37587 6.73510 6.93018 7.00230 8.60326 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.002945 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.480041 B = 9505.220041 C =11939.880830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.132 3.868 4 C -0.149 4.149 5 C -0.084 4.084 6 C -0.094 4.094 7 C 0.092 3.908 8 N -0.419 5.419 9 C 0.029 3.971 10 C 0.078 3.922 11 N -0.473 5.473 12 C 0.309 3.691 13 N -0.643 5.643 14 C 0.525 3.475 15 O -0.489 6.489 16 C -0.112 4.112 17 S -0.167 6.167 18 C -0.528 4.528 19 H 0.065 0.935 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.042 4.042 27 C -0.201 4.201 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.215 0.785 34 H 0.201 0.799 35 H 0.431 0.569 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.277 0.723 39 H 0.139 0.861 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.707 3.516 19.870 30.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.086 3.914 4 C -0.168 4.168 5 C -0.103 4.103 6 C -0.096 4.096 7 C -0.052 4.052 8 N -0.133 5.133 9 C -0.133 4.133 10 C -0.083 4.083 11 N -0.194 5.194 12 C 0.075 3.925 13 N -0.296 5.296 14 C 0.310 3.690 15 O -0.359 6.359 16 C -0.263 4.263 17 S 0.060 5.940 18 C -0.676 4.676 19 H 0.084 0.916 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.734 3.266 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.061 4.061 27 C -0.219 4.219 28 H 0.136 0.864 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.231 0.769 34 H 0.218 0.782 35 H 0.274 0.726 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.156 0.844 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.632 4.995 19.562 29.591 hybrid contribution -0.120 -1.322 -0.486 1.414 sum -21.753 3.673 19.076 29.165 Atomic orbital electron populations 1.23404 0.76196 1.05749 1.02553 1.86075 1.23691 1.26595 1.88036 1.19347 0.92555 0.84874 0.94638 1.20530 0.91968 0.98650 1.05657 1.21085 1.00065 0.90827 0.98324 1.18226 0.94004 0.89238 1.08114 1.20160 0.93788 0.95562 0.95641 1.68520 1.27422 1.00565 1.16757 1.24258 0.94228 0.95200 0.99592 1.24381 0.94613 0.98958 0.90329 1.68473 1.29004 1.00068 1.21810 1.19520 0.92231 0.89177 0.91571 1.43784 1.35713 1.14190 1.35893 1.20409 0.79211 0.89236 0.80107 1.90791 1.54908 1.24379 1.65776 1.23281 1.02313 1.00304 1.00380 1.84745 1.43790 1.19221 1.46252 1.22439 1.23375 0.97055 1.24712 0.91631 1.25528 0.96719 0.99573 0.94047 1.70011 1.31474 1.29740 1.24132 0.85898 0.80593 0.81001 0.79090 1.18694 1.18349 1.16063 1.21078 0.92530 0.98182 0.94275 1.21458 1.01587 0.91139 1.07753 0.86441 0.91238 0.91501 0.83326 0.84530 0.76854 0.78236 0.72555 0.85944 0.86231 0.91336 0.84353 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.28 10.49 -91.86 -0.96 -6.25 16 3 C 0.13 2.25 6.69 22.57 0.15 2.40 16 4 C -0.15 -2.62 9.97 22.33 0.22 -2.40 16 5 C -0.08 -1.57 7.67 22.48 0.17 -1.40 16 6 C -0.09 -1.93 5.41 -20.05 -0.11 -2.04 16 7 C 0.09 2.21 6.38 42.14 0.27 2.47 16 8 N -0.42 -9.04 10.31 -183.87 -1.90 -10.94 16 9 C 0.03 0.48 11.21 84.66 0.95 1.43 16 10 C 0.08 1.63 11.21 84.64 0.95 2.58 16 11 N -0.47 -14.66 8.06 -191.67 -1.54 -16.21 16 12 C 0.31 8.86 7.32 133.24 0.98 9.84 16 13 N -0.64 -18.24 4.87 -307.51 -1.50 -19.74 16 14 C 0.52 19.01 7.81 87.66 0.68 19.69 16 15 O -0.49 -21.49 14.14 -3.01 -0.04 -21.53 16 16 C -0.11 -4.20 6.16 71.24 0.44 -3.76 16 17 S -0.17 -8.34 18.55 -56.49 -1.05 -9.39 16 18 C -0.53 -30.41 10.04 67.95 0.68 -29.72 16 19 H 0.07 3.96 8.03 -2.91 -0.02 3.94 16 20 C 0.05 2.74 5.50 84.86 0.47 3.20 16 21 N -0.92 -55.47 13.97 21.65 0.30 -55.17 16 22 Si 0.91 44.80 27.74 68.60 1.90 46.70 16 23 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 26 C -0.04 -0.72 9.66 22.48 0.22 -0.51 16 27 C -0.20 -2.94 9.02 22.33 0.20 -2.74 16 28 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 30 H 0.07 0.40 7.65 -2.39 -0.02 0.39 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.14 2.42 6.84 -2.91 -0.02 2.40 16 33 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.43 9.65 5.25 -92.71 -0.49 9.17 16 36 H 0.12 4.10 8.14 -2.40 -0.02 4.08 16 37 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 38 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 39 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.16 1.41 6.28 -2.91 -0.02 1.40 16 Total: -1.00 -79.81 359.60 3.17 -76.64 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.58 Total: 15.60 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 7.38 Total: 0.28 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -4.64 Total: -102.05 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.01 Total: -27.78 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.70 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.05 Total: -9.39 kcal Total: -79.81 3.17 -76.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.728 kcal (2) G-P(sol) polarization free energy of solvation -79.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds