Wall clock time and date at job start Wed Apr 1 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35856 * 125.64084 * 2 1 4 4 C 1.35929 * 108.76091 * 180.11722 * 3 2 1 5 5 N 1.40654 * 126.12309 * 179.86240 * 4 3 2 6 6 C 1.34775 * 120.00128 * 179.71180 * 5 4 3 7 7 O 1.21648 * 119.99677 * 0.02562 * 6 5 4 8 8 C 1.47403 * 120.00188 * 179.72928 * 6 5 4 9 9 C 1.39683 * 120.21560 * 0.27241 * 8 6 5 10 10 C 1.37816 * 119.93601 * 180.02562 * 9 8 6 11 11 C 1.38656 * 120.37912 * 0.02562 * 10 9 8 12 12 C 1.37905 * 120.44368 * 0.02562 * 11 10 9 13 13 C 1.39112 * 120.04929 * 359.67670 * 12 11 10 14 14 S 1.76208 * 120.18666 * 180.32166 * 13 12 11 15 15 C 1.76190 * 100.00169 * 350.56521 * 14 13 12 16 16 H 1.07998 * 120.00391 * 356.67375 * 15 14 13 17 17 C 1.38807 * 119.99913 * 176.66863 * 15 14 13 18 18 N 1.31556 * 120.00024 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99971 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47349 * 89.99636 * 19 17 15 21 21 H 1.48500 * 109.47152 * 209.99816 * 19 17 15 22 22 H 1.48499 * 109.47060 * 329.99817 * 19 17 15 23 23 C 1.40224 * 107.74736 * 359.60210 * 4 3 2 24 24 C 1.37608 * 125.64632 * 179.66449 * 2 1 3 25 25 C 1.46664 * 126.16355 * 0.02562 * 24 2 1 26 26 N 1.34771 * 119.99736 * 184.44753 * 25 24 2 27 27 O 1.21695 * 119.99989 * 4.44407 * 25 24 2 28 28 H 1.09002 * 109.47069 * 263.88921 * 1 2 3 29 29 H 1.09000 * 109.47087 * 23.89271 * 1 2 3 30 30 H 1.08999 * 109.46688 * 143.89322 * 1 2 3 31 31 H 1.07999 * 125.61710 * 359.97438 * 3 2 1 32 32 H 0.97005 * 120.00167 * 359.72257 * 5 4 3 33 33 H 1.07990 * 120.03013 * 0.03276 * 9 8 6 34 34 H 1.08000 * 119.80592 * 180.02562 * 10 9 8 35 35 H 1.08002 * 119.77487 * 179.97438 * 11 10 9 36 36 H 1.08007 * 119.97410 * 179.97438 * 12 11 10 37 37 H 0.96999 * 120.00090 * 180.02562 * 18 17 15 38 38 H 1.07995 * 126.44457 * 180.24065 * 23 4 3 39 39 H 0.97003 * 120.00061 * 355.43909 * 26 25 24 40 40 H 0.96999 * 120.00159 * 175.44115 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2567 1.1041 0.0000 4 6 3.5575 0.7094 -0.0026 5 7 4.6808 1.5558 -0.0062 6 6 5.9214 1.0292 -0.0027 7 8 6.0696 -0.1782 0.0031 8 6 7.0987 1.9162 -0.0125 9 6 6.9337 3.3032 -0.0197 10 6 8.0385 4.1271 -0.0294 11 6 9.3157 3.5874 -0.0325 12 6 9.4966 2.2203 -0.0266 13 6 8.3944 1.3718 -0.0105 14 16 8.6214 -0.3755 0.0057 15 6 10.3563 -0.4613 -0.2896 16 1 10.9188 0.4428 -0.4699 17 6 11.0001 -1.6911 -0.2905 18 7 12.2956 -1.7552 -0.5104 19 14 10.0271 -3.2549 0.0208 20 1 9.5297 -3.7938 -1.2705 21 1 10.9030 -4.2614 0.6727 22 1 8.8750 -2.9528 0.9077 23 6 3.5787 -0.6927 0.0049 24 6 2.2670 -1.1182 0.0065 25 6 1.8092 -2.5116 0.0142 26 7 2.7043 -3.5144 0.1106 27 8 0.6210 -2.7621 -0.0665 28 1 -0.3633 -0.1094 1.0218 29 1 -0.3633 0.9396 -0.4162 30 1 -0.3633 -0.8303 -0.6056 31 1 1.9097 2.1268 -0.0004 32 1 4.5627 2.5186 -0.0111 33 1 5.9415 3.7295 -0.0176 34 1 7.9085 5.1992 -0.0345 35 1 10.1746 4.2422 -0.0406 36 1 10.4949 1.8081 -0.0295 37 1 12.7454 -2.6145 -0.5114 38 1 4.4571 -1.3209 0.0088 39 1 3.6544 -3.3185 0.1083 40 1 2.3986 -4.4322 0.1823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756967708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:53 Heat of formation + Delta-G solvation = 13.435561 kcal Electronic energy + Delta-G solvation = -26591.566272 eV Core-core repulsion = 22691.700262 eV Total energy + Delta-G solvation = -3899.866010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58553 -39.67603 -38.79538 -37.61821 -34.76180 -33.97886 -32.75252 -32.12134 -30.58453 -30.44254 -28.94537 -26.30839 -25.94991 -23.90579 -23.10015 -22.16241 -21.05584 -20.02875 -19.65569 -18.47760 -17.97371 -17.04208 -16.75103 -16.05708 -15.81032 -15.75621 -15.45738 -15.20536 -14.67325 -14.63895 -14.31667 -14.15019 -13.99153 -13.77731 -13.31378 -13.28757 -12.74281 -12.65072 -12.48055 -12.37128 -12.12054 -11.92887 -11.35199 -11.22478 -10.96879 -10.55744 -10.51543 -10.24761 -9.83964 -9.80849 -9.75088 -9.47012 -8.90432 -8.55184 -8.45559 -8.27790 -7.64921 -6.84432 -6.51622 -4.22815 1.27586 1.37880 1.85718 2.50728 2.57041 2.82088 3.16745 3.25487 3.28160 3.30458 3.42091 3.54453 3.67985 4.10701 4.34335 4.58603 4.65636 4.78432 4.83005 4.91386 5.05603 5.08702 5.17726 5.34134 5.39572 5.47396 5.67773 5.76747 5.97258 6.08353 6.20080 6.29315 6.43942 6.55712 6.69420 6.73089 6.88545 7.00561 7.01197 7.16150 7.24081 7.39579 7.71376 7.72780 8.11450 8.30465 8.55336 8.91816 10.55669 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010592 B = 0.003695 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.764980 B = 7576.241176 C =10189.662256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.407 5.407 3 C -0.024 4.024 4 C 0.076 3.924 5 N -0.653 5.653 6 C 0.557 3.443 7 O -0.499 6.499 8 C -0.172 4.172 9 C -0.065 4.065 10 C -0.176 4.176 11 C -0.075 4.075 12 C -0.143 4.143 13 C -0.028 4.028 14 S 0.089 5.911 15 C -0.579 4.579 16 H 0.106 0.894 17 C 0.103 3.897 18 N -0.862 5.862 19 Si 0.849 3.151 20 H -0.263 1.263 21 H -0.269 1.269 22 H -0.233 1.233 23 C -0.132 4.132 24 C -0.055 4.055 25 C 0.599 3.401 26 N -0.841 5.841 27 O -0.562 6.562 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.170 0.830 32 H 0.405 0.595 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.275 0.725 38 H 0.173 0.827 39 H 0.410 0.590 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.611 7.254 1.701 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.082 5.082 3 C -0.161 4.161 4 C -0.025 4.025 5 N -0.298 5.298 6 C 0.347 3.653 7 O -0.376 6.376 8 C -0.187 4.187 9 C -0.085 4.085 10 C -0.200 4.200 11 C -0.097 4.097 12 C -0.168 4.168 13 C -0.147 4.147 14 S 0.350 5.650 15 C -0.725 4.725 16 H 0.124 0.876 17 C -0.108 4.108 18 N -0.496 5.496 19 Si 0.673 3.327 20 H -0.187 1.187 21 H -0.194 1.194 22 H -0.157 1.157 23 C -0.161 4.161 24 C -0.169 4.169 25 C 0.387 3.613 26 N -0.404 5.404 27 O -0.442 6.442 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.188 0.812 32 H 0.241 0.759 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.164 0.836 37 H 0.085 0.915 38 H 0.190 0.810 39 H 0.240 0.760 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -20.098 4.996 1.783 20.786 hybrid contribution 1.151 0.824 -0.080 1.418 sum -18.947 5.820 1.704 19.894 Atomic orbital electron populations 1.22180 0.75916 1.04572 1.03992 1.43434 1.06420 1.04408 1.53939 1.21256 0.88760 0.91706 1.14375 1.16870 0.85943 0.90888 1.08767 1.42832 1.03566 1.08981 1.74422 1.18274 0.82154 0.88174 0.76676 1.90650 1.84489 1.14500 1.47933 1.19032 0.91332 0.92872 1.15420 1.20902 0.98062 0.91916 0.97639 1.20728 0.92558 0.98852 1.07826 1.21155 0.96833 0.94926 0.96808 1.21562 0.99663 0.92888 1.02642 1.22476 0.93801 1.01218 0.97240 1.83955 1.07852 0.95716 1.77456 1.23524 0.94229 0.98714 1.56066 0.87648 1.24806 0.94517 0.98866 0.92638 1.69907 1.08325 1.26800 1.44536 0.86881 0.81746 0.83246 0.80804 1.18735 1.19421 1.15670 1.21852 0.95142 0.93969 1.05090 1.19960 0.90053 0.87635 1.19237 1.16911 0.85283 0.84029 0.75116 1.43501 1.10766 1.09273 1.76851 1.90801 1.16362 1.85210 1.51860 0.90792 0.89942 0.88320 0.81246 0.75924 0.86891 0.86688 0.86543 0.83624 0.91492 0.80980 0.75999 0.76174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.45 59.85 0.63 1.25 16 2 N -0.41 -4.64 3.17 -120.01 -0.38 -5.03 16 3 C -0.02 -0.26 11.41 -16.60 -0.19 -0.45 16 4 C 0.08 1.01 6.91 -83.89 -0.58 0.43 16 5 N -0.65 -8.64 5.42 -11.00 -0.06 -8.69 16 6 C 0.56 9.66 7.72 -12.53 -0.10 9.57 16 7 O -0.50 -10.02 10.94 5.24 0.06 -9.97 16 8 C -0.17 -3.06 5.89 -104.76 -0.62 -3.68 16 9 C -0.07 -0.91 9.53 -39.20 -0.37 -1.28 16 10 C -0.18 -2.44 10.02 -39.58 -0.40 -2.83 16 11 C -0.08 -1.20 10.02 -39.55 -0.40 -1.59 16 12 C -0.14 -2.84 9.20 -39.38 -0.36 -3.20 16 13 C -0.03 -0.60 6.14 -38.39 -0.24 -0.83 16 14 S 0.09 2.14 16.53 -107.50 -1.78 0.36 16 15 C -0.58 -15.74 9.54 30.94 0.30 -15.44 16 16 H 0.11 2.97 5.24 -52.49 -0.28 2.69 16 17 C 0.10 2.83 5.50 -17.46 -0.10 2.73 16 18 N -0.86 -24.61 13.96 55.49 0.77 -23.83 16 19 Si 0.85 20.06 27.74 -169.99 -4.71 15.35 16 20 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.23 -5.38 6.74 56.52 0.38 -5.00 16 23 C -0.13 -1.92 9.14 -38.96 -0.36 -2.27 16 24 C -0.05 -0.73 6.88 -82.00 -0.56 -1.30 16 25 C 0.60 7.87 8.05 -12.86 -0.10 7.76 16 26 N -0.84 -8.45 8.86 30.26 0.27 -8.18 16 27 O -0.56 -8.50 15.61 5.19 0.08 -8.42 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.10 0.97 6.59 -51.93 -0.34 0.63 16 31 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.40 3.93 6.85 -40.82 -0.28 3.65 16 33 H 0.11 1.11 6.40 -52.49 -0.34 0.78 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.15 3.17 5.10 -52.48 -0.27 2.91 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.17 2.71 5.35 -52.49 -0.28 2.43 16 39 H 0.41 3.82 7.72 -40.82 -0.32 3.51 16 40 H 0.41 3.27 8.93 -40.82 -0.36 2.90 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -33.86 350.51 -7.64 -41.50 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.73 Total: 12.77 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.45 Total: -11.14 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.60 Total: -45.73 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.14 Total: -18.38 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.71 Total: 15.35 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.78 Total: 0.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.86 -7.64 -41.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756967708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.935 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds