Wall clock time and date at job start Wed Apr 1 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35856 * 125.64084 * 2 1 4 4 C 1.35929 * 108.76091 * 180.11722 * 3 2 1 5 5 N 1.40654 * 126.12309 * 179.86240 * 4 3 2 6 6 C 1.34775 * 120.00128 * 179.71180 * 5 4 3 7 7 O 1.21648 * 119.99677 * 0.02562 * 6 5 4 8 8 C 1.47403 * 120.00188 * 179.72928 * 6 5 4 9 9 C 1.39683 * 120.21560 * 0.27241 * 8 6 5 10 10 C 1.37816 * 119.93601 * 180.02562 * 9 8 6 11 11 C 1.38656 * 120.37912 * 0.02562 * 10 9 8 12 12 C 1.37905 * 120.44368 * 0.02562 * 11 10 9 13 13 C 1.39112 * 120.04929 * 359.67670 * 12 11 10 14 14 S 1.76208 * 120.18666 * 180.32166 * 13 12 11 15 15 C 1.76190 * 100.00169 * 350.56521 * 14 13 12 16 16 H 1.07998 * 120.00391 * 356.67375 * 15 14 13 17 17 C 1.38807 * 119.99913 * 176.66863 * 15 14 13 18 18 N 1.31556 * 120.00024 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99971 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47349 * 89.99636 * 19 17 15 21 21 H 1.48500 * 109.47152 * 209.99816 * 19 17 15 22 22 H 1.48499 * 109.47060 * 329.99817 * 19 17 15 23 23 C 1.40224 * 107.74736 * 359.60210 * 4 3 2 24 24 C 1.37608 * 125.64632 * 179.66449 * 2 1 3 25 25 C 1.46664 * 126.16355 * 0.02562 * 24 2 1 26 26 N 1.34771 * 119.99736 * 184.44753 * 25 24 2 27 27 O 1.21695 * 119.99989 * 4.44407 * 25 24 2 28 28 H 1.09002 * 109.47069 * 263.88921 * 1 2 3 29 29 H 1.09000 * 109.47087 * 23.89271 * 1 2 3 30 30 H 1.08999 * 109.46688 * 143.89322 * 1 2 3 31 31 H 1.07999 * 125.61710 * 359.97438 * 3 2 1 32 32 H 0.97005 * 120.00167 * 359.72257 * 5 4 3 33 33 H 1.07990 * 120.03013 * 0.03276 * 9 8 6 34 34 H 1.08000 * 119.80592 * 180.02562 * 10 9 8 35 35 H 1.08002 * 119.77487 * 179.97438 * 11 10 9 36 36 H 1.08007 * 119.97410 * 179.97438 * 12 11 10 37 37 H 0.96999 * 120.00090 * 180.02562 * 18 17 15 38 38 H 1.07995 * 126.44457 * 180.24065 * 23 4 3 39 39 H 0.97003 * 120.00061 * 355.43909 * 26 25 24 40 40 H 0.96999 * 120.00159 * 175.44115 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2567 1.1041 0.0000 4 6 3.5575 0.7094 -0.0026 5 7 4.6808 1.5558 -0.0062 6 6 5.9214 1.0292 -0.0027 7 8 6.0696 -0.1782 0.0031 8 6 7.0987 1.9162 -0.0125 9 6 6.9337 3.3032 -0.0197 10 6 8.0385 4.1271 -0.0294 11 6 9.3157 3.5874 -0.0325 12 6 9.4966 2.2203 -0.0266 13 6 8.3944 1.3718 -0.0105 14 16 8.6214 -0.3755 0.0057 15 6 10.3563 -0.4613 -0.2896 16 1 10.9188 0.4428 -0.4699 17 6 11.0001 -1.6911 -0.2905 18 7 12.2956 -1.7552 -0.5104 19 14 10.0271 -3.2549 0.0208 20 1 9.5297 -3.7938 -1.2705 21 1 10.9030 -4.2614 0.6727 22 1 8.8750 -2.9528 0.9077 23 6 3.5787 -0.6927 0.0049 24 6 2.2670 -1.1182 0.0065 25 6 1.8092 -2.5116 0.0142 26 7 2.7043 -3.5144 0.1106 27 8 0.6210 -2.7621 -0.0665 28 1 -0.3633 -0.1094 1.0218 29 1 -0.3633 0.9396 -0.4162 30 1 -0.3633 -0.8303 -0.6056 31 1 1.9097 2.1268 -0.0004 32 1 4.5627 2.5186 -0.0111 33 1 5.9415 3.7295 -0.0176 34 1 7.9085 5.1992 -0.0345 35 1 10.1746 4.2422 -0.0406 36 1 10.4949 1.8081 -0.0295 37 1 12.7454 -2.6145 -0.5114 38 1 4.4571 -1.3209 0.0088 39 1 3.6544 -3.3185 0.1083 40 1 2.3986 -4.4322 0.1823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756967708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:52 Heat of formation + Delta-G solvation = -12.194881 kcal Electronic energy + Delta-G solvation = -26592.677691 eV Core-core repulsion = 22691.700262 eV Total energy + Delta-G solvation = -3900.977429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.54494 -40.93761 -39.83598 -38.94387 -35.90802 -34.94151 -34.78781 -33.14915 -31.84974 -31.78197 -29.90823 -27.96194 -27.16844 -25.12363 -24.14505 -23.49549 -22.23095 -21.06563 -20.86100 -19.85747 -19.25411 -18.36942 -17.71965 -17.46028 -17.08468 -16.86554 -16.70695 -16.41956 -15.97832 -15.89577 -15.45731 -15.30764 -15.23694 -15.04712 -14.86066 -14.24533 -14.23177 -13.78087 -13.63368 -13.36037 -13.27293 -13.23824 -13.08826 -12.97003 -12.46329 -12.22469 -11.59765 -11.46489 -11.40271 -11.26602 -11.21326 -10.77093 -10.55010 -9.98216 -9.87536 -9.44924 -8.74060 -8.56805 -8.51050 -6.26717 -0.03961 0.39735 0.50251 1.04152 1.26891 1.42087 1.49871 1.63302 1.68129 2.16702 2.17468 2.21954 2.39950 2.67928 2.78590 2.81736 3.03401 3.75523 3.94743 3.97827 4.05151 4.16749 4.26339 4.40563 4.46123 4.59972 4.62030 4.71011 4.79790 4.82430 5.02910 5.11228 5.23385 5.40528 5.51579 5.62780 5.65158 5.68795 5.86857 6.00255 6.08498 6.19149 6.26183 6.33304 6.67494 6.86977 7.19587 7.34422 8.54647 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010592 B = 0.003695 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.764980 B = 7576.241176 C =10189.662256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.406 5.406 3 C 0.015 3.985 4 C 0.038 3.962 5 N -0.627 5.627 6 C 0.549 3.451 7 O -0.533 6.533 8 C -0.170 4.170 9 C -0.053 4.053 10 C -0.147 4.147 11 C -0.072 4.072 12 C -0.170 4.170 13 C -0.053 4.053 14 S 0.033 5.967 15 C -0.586 4.586 16 H 0.078 0.922 17 C 0.051 3.949 18 N -0.910 5.910 19 Si 0.907 3.093 20 H -0.260 1.260 21 H -0.256 1.256 22 H -0.230 1.230 23 C -0.150 4.150 24 C -0.074 4.074 25 C 0.594 3.406 26 N -0.828 5.828 27 O -0.587 6.587 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.221 0.779 32 H 0.425 0.575 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.145 0.855 36 H 0.110 0.890 37 H 0.278 0.722 38 H 0.150 0.850 39 H 0.413 0.587 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.628 11.376 2.011 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.079 5.079 3 C -0.123 4.123 4 C -0.061 4.061 5 N -0.274 5.274 6 C 0.338 3.662 7 O -0.412 6.412 8 C -0.183 4.183 9 C -0.073 4.073 10 C -0.170 4.170 11 C -0.093 4.093 12 C -0.195 4.195 13 C -0.170 4.170 14 S 0.289 5.711 15 C -0.732 4.732 16 H 0.095 0.905 17 C -0.155 4.155 18 N -0.547 5.547 19 Si 0.728 3.272 20 H -0.185 1.185 21 H -0.180 1.180 22 H -0.154 1.154 23 C -0.179 4.179 24 C -0.189 4.189 25 C 0.381 3.619 26 N -0.392 5.392 27 O -0.470 6.470 28 H 0.100 0.900 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.237 0.763 32 H 0.265 0.735 33 H 0.188 0.812 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.088 0.912 38 H 0.168 0.832 39 H 0.244 0.756 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -24.169 9.206 2.100 25.948 hybrid contribution 2.146 -0.020 -0.183 2.154 sum -22.023 9.186 1.917 23.938 Atomic orbital electron populations 1.22397 0.73965 1.06043 1.04518 1.43787 1.07644 1.04035 1.52446 1.21942 0.87266 0.93264 1.09870 1.17051 0.87027 0.90427 1.11590 1.42435 1.02151 1.09947 1.72847 1.18356 0.83351 0.87724 0.76724 1.90655 1.85041 1.16038 1.49493 1.19393 0.90094 0.95015 1.13785 1.21527 1.01115 0.89744 0.94912 1.21388 0.90910 1.01525 1.03141 1.21541 0.99532 0.93122 0.95127 1.21431 0.97949 0.95013 1.05134 1.22494 0.95867 0.98943 0.99730 1.83820 1.05225 1.00110 1.81980 1.23685 0.96063 0.97893 1.55609 0.90457 1.25621 0.95384 1.01834 0.92691 1.69997 1.09820 1.27643 1.47227 0.86020 0.80625 0.79761 0.80830 1.18462 1.18042 1.15401 1.21751 0.95042 0.95068 1.06078 1.19926 0.90123 0.88312 1.20492 1.17056 0.85191 0.84584 0.75028 1.43437 1.10687 1.09462 1.75583 1.90780 1.17220 1.85597 1.53435 0.90045 0.85994 0.90043 0.76253 0.73536 0.81221 0.81323 0.83756 0.87189 0.91230 0.83243 0.75580 0.75075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.45 127.77 1.34 2.28 16 2 N -0.41 -7.97 3.17 -533.59 -1.69 -9.66 16 3 C 0.01 0.24 11.41 83.53 0.95 1.19 16 4 C 0.04 0.91 6.91 37.67 0.26 1.17 16 5 N -0.63 -14.35 5.42 -306.95 -1.66 -16.01 16 6 C 0.55 18.32 7.72 86.66 0.67 18.99 16 7 O -0.53 -21.98 10.94 -4.18 -0.05 -22.03 16 8 C -0.17 -5.72 5.89 -19.95 -0.12 -5.84 16 9 C -0.05 -1.19 9.53 22.52 0.21 -0.98 16 10 C -0.15 -3.18 10.02 22.27 0.22 -2.95 16 11 C -0.07 -2.11 10.02 22.29 0.22 -1.88 16 12 C -0.17 -6.97 9.20 22.40 0.21 -6.77 16 13 C -0.05 -2.30 6.14 23.04 0.14 -2.16 16 14 S 0.03 1.68 16.53 -56.49 -0.93 0.75 16 15 C -0.59 -34.49 9.54 67.96 0.65 -33.84 16 16 H 0.08 4.81 5.24 -2.91 -0.02 4.80 16 17 C 0.05 2.98 5.50 84.87 0.47 3.45 16 18 N -0.91 -55.46 13.96 21.65 0.30 -55.16 16 19 Si 0.91 44.00 27.74 68.60 1.90 45.90 16 20 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.23 -10.96 6.74 99.48 0.67 -10.29 16 23 C -0.15 -4.32 9.14 22.67 0.21 -4.11 16 24 C -0.07 -1.91 6.88 40.36 0.28 -1.64 16 25 C 0.59 15.56 8.05 86.44 0.70 16.25 16 26 N -0.83 -17.01 8.86 -176.40 -1.56 -18.58 16 27 O -0.59 -17.66 15.61 -4.33 -0.07 -17.73 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.12 0.67 8.12 -2.39 -0.02 0.65 16 30 H 0.08 1.44 6.59 -2.39 -0.02 1.43 16 31 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.42 5.70 6.85 -92.70 -0.64 5.06 16 33 H 0.17 1.90 6.40 -2.92 -0.02 1.89 16 34 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.11 5.27 5.10 -2.91 -0.01 5.25 16 37 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.15 4.97 5.35 -2.91 -0.02 4.95 16 39 H 0.41 8.15 7.72 -92.71 -0.72 7.44 16 40 H 0.42 6.77 8.93 -92.71 -0.83 5.94 16 Total: -1.00 -83.93 350.51 1.59 -82.34 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -1.05 Total: 27.00 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 6.40 Total: -16.82 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.61 Total: -99.40 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.11 Total: -39.76 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -0.93 Total: 0.75 kcal Total: -83.93 1.59 -82.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756967708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.141 kcal (2) G-P(sol) polarization free energy of solvation -83.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds