Wall clock time and date at job start Wed Apr 1 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47041 * 2 1 4 4 C 1.36909 * 119.99931 * 264.81526 * 3 2 1 5 5 H 1.08004 * 119.99659 * 126.21794 * 4 3 2 6 6 C 1.38970 * 120.00304 * 306.22411 * 4 3 2 7 7 N 1.31423 * 119.99868 * 4.47913 * 6 4 3 8 8 Si 1.86796 * 120.00195 * 184.48258 * 6 4 3 9 9 H 1.48499 * 109.47269 * 89.99610 * 8 6 4 10 10 H 1.48500 * 109.47198 * 209.99889 * 8 6 4 11 11 H 1.48501 * 109.47213 * 329.99793 * 8 6 4 12 12 C 1.34776 * 119.99961 * 84.82400 * 3 2 1 13 13 O 1.21815 * 120.00224 * 3.42541 * 12 3 2 14 14 C 1.41577 * 119.99923 * 183.42648 * 12 3 2 15 15 S 1.75814 * 125.48873 * 353.09731 * 14 12 3 16 16 C 1.70559 * 91.69831 * 180.02562 * 15 14 12 17 17 C 1.33570 * 111.22009 * 0.02562 * 16 15 14 18 18 C 1.37594 * 125.49094 * 173.11760 * 14 12 3 19 19 N 1.39431 * 123.51483 * 0.02562 * 18 14 12 20 20 C 1.34783 * 119.99918 * 187.31483 * 19 18 14 21 21 O 1.21531 * 119.99651 * 5.45748 * 20 19 18 22 22 C 1.48094 * 120.00104 * 185.46091 * 20 19 18 23 23 C 1.39845 * 120.92345 * 359.71370 * 22 20 19 24 24 C 1.38145 * 118.99412 * 179.78223 * 23 22 20 25 25 N 1.31812 * 120.90122 * 0.50874 * 24 23 22 26 26 C 1.31823 * 122.05281 * 359.73841 * 25 24 23 27 27 C 1.38132 * 120.89875 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47202 * 300.00243 * 1 2 3 29 29 H 1.09000 * 109.46811 * 60.00216 * 1 2 3 30 30 H 1.08998 * 109.46958 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47202 * 239.99757 * 2 1 3 32 32 H 1.09000 * 109.46811 * 119.99784 * 2 1 3 33 33 H 0.97004 * 120.00139 * 179.97438 * 7 6 4 34 34 H 1.07992 * 124.38988 * 179.72893 * 16 15 14 35 35 H 1.08000 * 122.44819 * 179.97438 * 17 16 15 36 36 H 0.96996 * 120.00267 * 7.30661 * 19 18 14 37 37 H 1.07997 * 120.50288 * 0.02562 * 23 22 20 38 38 H 1.08006 * 119.54488 * 180.25488 * 24 23 22 39 39 H 1.08005 * 119.54618 * 179.97438 * 26 25 24 40 40 H 1.08000 * 120.50006 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3475 1.9909 -1.1808 5 1 1.9048 2.9414 -1.4395 6 6 3.2512 1.3866 -2.0466 7 7 3.7225 0.1904 -1.7745 8 14 3.7960 2.2747 -3.5970 9 1 5.0026 3.0889 -3.3030 10 1 4.1156 1.2791 -4.6514 11 1 2.7031 3.1622 -4.0691 12 6 2.1437 2.0516 1.1624 13 8 1.9107 1.4897 2.2178 14 6 2.5460 3.4090 1.1569 15 16 3.0814 4.3091 -0.2553 16 6 3.3224 5.7199 0.6724 17 6 3.0172 5.5124 1.9561 18 6 2.5815 4.2362 2.2559 19 7 2.2175 3.8283 3.5385 20 6 2.1373 4.7316 4.5356 21 8 2.2848 5.9142 4.2974 22 6 1.8696 4.2831 5.9214 23 6 1.6909 2.9278 6.2163 24 6 1.4478 2.5534 7.5236 25 7 1.3735 3.4541 8.4831 26 6 1.5307 4.7416 8.2477 27 6 1.7820 5.2037 6.9705 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.3530 -0.2316 -2.3789 34 1 3.6804 6.6579 0.2745 35 1 3.1042 6.2859 2.7048 36 1 2.0218 2.8945 3.7133 37 1 1.7462 2.1848 5.4345 38 1 1.3126 1.5087 7.7620 39 1 1.4613 5.4447 9.0646 40 1 1.9102 6.2599 6.7850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764874935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:48 Heat of formation + Delta-G solvation = 11.044581 kcal Electronic energy + Delta-G solvation = -27431.380963 eV Core-core repulsion = 23531.411273 eV Total energy + Delta-G solvation = -3899.969691 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.85592 -39.67666 -38.72261 -36.77788 -35.01131 -33.94130 -32.48085 -32.13060 -31.36836 -30.59042 -28.36591 -25.64277 -25.16612 -23.82566 -23.36949 -22.28695 -21.18588 -19.98594 -19.00105 -18.37820 -17.99056 -16.52301 -16.31167 -15.84429 -15.67676 -15.30070 -15.18300 -15.10475 -14.49422 -14.24386 -14.04193 -13.97665 -13.88860 -13.65960 -13.16114 -12.85563 -12.76265 -12.41677 -12.01212 -11.85952 -11.81848 -11.56532 -11.40391 -11.17161 -10.98141 -10.52642 -10.23457 -10.07293 -10.05665 -10.03006 -9.88558 -9.54662 -9.38483 -9.03680 -8.83829 -7.97459 -7.62894 -7.14466 -6.67479 -4.60160 0.50444 0.91268 1.31734 2.38690 2.69249 2.84664 2.97813 3.04499 3.08103 3.32399 3.38442 3.74647 3.83743 4.23667 4.30019 4.48506 4.64821 4.68254 4.75337 4.81688 4.91415 5.34402 5.51770 5.57677 5.68245 5.89729 5.96490 6.04343 6.15640 6.29684 6.31811 6.35591 6.41541 6.52357 6.72520 6.78039 6.95260 7.03304 7.18507 7.29906 7.69498 7.72013 7.84339 8.03391 8.21718 8.69919 9.19973 9.65971 10.29731 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.003488 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.712128 B = 8024.994042 C = 9398.142482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 N -0.432 5.432 4 C -0.347 4.347 5 H 0.101 0.899 6 C 0.069 3.931 7 N -0.840 5.840 8 Si 0.901 3.099 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.258 1.258 12 C 0.553 3.447 13 O -0.613 6.613 14 C -0.277 4.277 15 S 0.310 5.690 16 C -0.310 4.310 17 C -0.171 4.171 18 C 0.172 3.828 19 N -0.624 5.624 20 C 0.551 3.449 21 O -0.519 6.519 22 C -0.083 4.083 23 C -0.137 4.137 24 C 0.097 3.903 25 N -0.472 5.472 26 C 0.091 3.909 27 C -0.115 4.115 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.278 0.722 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.426 0.574 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 5.052 7.506 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.007 4.007 3 N -0.149 5.149 4 C -0.482 4.482 5 H 0.117 0.883 6 C -0.144 4.144 7 N -0.472 5.472 8 Si 0.725 3.275 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.182 1.182 12 C 0.345 3.655 13 O -0.503 6.503 14 C -0.401 4.401 15 S 0.584 5.416 16 C -0.447 4.447 17 C -0.203 4.203 18 C 0.060 3.940 19 N -0.272 5.272 20 C 0.338 3.662 21 O -0.396 6.396 22 C -0.094 4.094 23 C -0.158 4.158 24 C -0.060 4.060 25 N -0.181 5.181 26 C -0.065 4.065 27 C -0.136 4.136 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.168 0.832 35 H 0.176 0.824 36 H 0.270 0.730 37 H 0.165 0.835 38 H 0.181 0.819 39 H 0.180 0.820 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.853 4.839 7.090 8.781 hybrid contribution 0.276 0.561 -0.146 0.642 sum -1.577 5.399 6.944 8.936 Atomic orbital electron populations 1.22101 0.98278 1.00230 1.01164 1.21366 0.91462 0.84657 1.03250 1.43187 1.55429 1.11936 1.04327 1.19309 1.25697 1.05600 0.97631 0.88276 1.25699 0.93993 0.95291 0.99375 1.69781 1.27364 1.12861 1.37192 0.86277 0.80469 0.80061 0.80696 1.18739 1.20030 1.18174 1.16038 0.80174 0.84814 0.84476 1.90471 1.58762 1.69884 1.31148 1.23176 1.19746 1.00034 0.97148 1.84480 1.56557 0.94827 1.05715 1.26487 1.08036 1.08708 1.01503 1.20216 1.05478 0.96841 0.97719 1.16999 0.99966 0.93460 0.83554 1.43259 1.64130 1.13499 1.06353 1.18293 0.77617 0.85761 0.84568 1.90628 1.49085 1.16638 1.83276 1.20337 1.00851 0.94364 0.93842 1.22582 0.98037 0.95782 0.99364 1.22787 0.95371 0.99695 0.88126 1.67564 1.11188 1.02697 1.36680 1.22789 0.95778 0.92318 0.95655 1.22309 0.97235 1.01437 0.92624 0.93636 0.93020 0.93284 0.88053 0.92656 0.91132 0.83176 0.82443 0.72955 0.83544 0.81872 0.82020 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.20 37.16 0.38 -2.66 16 2 C 0.12 2.58 5.58 -4.04 -0.02 2.56 16 3 N -0.43 -10.24 2.46 -118.06 -0.29 -10.53 16 4 C -0.35 -8.03 6.47 -15.01 -0.10 -8.13 16 5 H 0.10 2.21 5.63 -33.84 -0.19 2.02 16 6 C 0.07 1.56 5.34 -17.46 -0.09 1.47 16 7 N -0.84 -20.18 11.38 55.50 0.63 -19.55 16 8 Si 0.90 17.37 29.56 -169.99 -5.02 12.34 16 9 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 10 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 12 C 0.55 13.15 7.40 -14.99 -0.11 13.04 16 13 O -0.61 -14.75 14.15 5.09 0.07 -14.68 16 14 C -0.28 -6.08 6.15 -38.54 -0.24 -6.32 16 15 S 0.31 5.98 18.24 -107.50 -1.96 4.02 16 16 C -0.31 -5.50 10.89 29.10 0.32 -5.18 16 17 C -0.17 -3.30 9.04 -41.25 -0.37 -3.67 16 18 C 0.17 3.54 6.62 -84.67 -0.56 2.98 16 19 N -0.62 -11.61 5.30 -11.23 -0.06 -11.67 16 20 C 0.55 9.36 7.73 -12.21 -0.09 9.27 16 21 O -0.52 -9.65 13.31 5.34 0.07 -9.58 16 22 C -0.08 -1.14 5.91 -104.65 -0.62 -1.76 16 23 C -0.14 -1.70 9.61 -39.01 -0.38 -2.07 16 24 C 0.10 1.08 11.17 -17.59 -0.20 0.88 16 25 N -0.47 -5.57 10.34 -13.31 -0.14 -5.70 16 26 C 0.09 0.95 11.17 -17.59 -0.20 0.76 16 27 C -0.12 -1.35 9.68 -39.02 -0.38 -1.73 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 2.36 5.98 -51.93 -0.31 2.05 16 32 H 0.05 1.27 7.53 -51.93 -0.39 0.88 16 33 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 34 H 0.15 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.16 3.04 5.36 -52.49 -0.28 2.76 16 36 H 0.43 7.83 4.43 -40.82 -0.18 7.65 16 37 H 0.15 1.77 6.55 -52.49 -0.34 1.43 16 38 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 39 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.15 1.58 7.74 -52.49 -0.41 1.17 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -27.90 349.14 -7.87 -35.77 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -3.78 Total: 14.89 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.66 Total: -0.58 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.14 Total: -47.45 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.14 Total: -24.26 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.02 Total: 12.34 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.96 Total: 4.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.90 -7.87 -35.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764874935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.817 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds