Wall clock time and date at job start Wed Apr 1 2020 02:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47041 * 2 1 4 4 C 1.36909 * 119.99931 * 264.81526 * 3 2 1 5 5 H 1.08004 * 119.99659 * 126.21794 * 4 3 2 6 6 C 1.38970 * 120.00304 * 306.22411 * 4 3 2 7 7 N 1.31423 * 119.99868 * 4.47913 * 6 4 3 8 8 Si 1.86796 * 120.00195 * 184.48258 * 6 4 3 9 9 H 1.48499 * 109.47269 * 89.99610 * 8 6 4 10 10 H 1.48500 * 109.47198 * 209.99889 * 8 6 4 11 11 H 1.48501 * 109.47213 * 329.99793 * 8 6 4 12 12 C 1.34776 * 119.99961 * 84.82400 * 3 2 1 13 13 O 1.21815 * 120.00224 * 3.42541 * 12 3 2 14 14 C 1.41577 * 119.99923 * 183.42648 * 12 3 2 15 15 S 1.75814 * 125.48873 * 353.09731 * 14 12 3 16 16 C 1.70559 * 91.69831 * 180.02562 * 15 14 12 17 17 C 1.33570 * 111.22009 * 0.02562 * 16 15 14 18 18 C 1.37594 * 125.49094 * 173.11760 * 14 12 3 19 19 N 1.39431 * 123.51483 * 0.02562 * 18 14 12 20 20 C 1.34783 * 119.99918 * 187.31483 * 19 18 14 21 21 O 1.21531 * 119.99651 * 5.45748 * 20 19 18 22 22 C 1.48094 * 120.00104 * 185.46091 * 20 19 18 23 23 C 1.39845 * 120.92345 * 359.71370 * 22 20 19 24 24 C 1.38145 * 118.99412 * 179.78223 * 23 22 20 25 25 N 1.31812 * 120.90122 * 0.50874 * 24 23 22 26 26 C 1.31823 * 122.05281 * 359.73841 * 25 24 23 27 27 C 1.38132 * 120.89875 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47202 * 300.00243 * 1 2 3 29 29 H 1.09000 * 109.46811 * 60.00216 * 1 2 3 30 30 H 1.08998 * 109.46958 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47202 * 239.99757 * 2 1 3 32 32 H 1.09000 * 109.46811 * 119.99784 * 2 1 3 33 33 H 0.97004 * 120.00139 * 179.97438 * 7 6 4 34 34 H 1.07992 * 124.38988 * 179.72893 * 16 15 14 35 35 H 1.08000 * 122.44819 * 179.97438 * 17 16 15 36 36 H 0.96996 * 120.00267 * 7.30661 * 19 18 14 37 37 H 1.07997 * 120.50288 * 0.02562 * 23 22 20 38 38 H 1.08006 * 119.54488 * 180.25488 * 24 23 22 39 39 H 1.08005 * 119.54618 * 179.97438 * 26 25 24 40 40 H 1.08000 * 120.50006 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3475 1.9909 -1.1808 5 1 1.9048 2.9414 -1.4395 6 6 3.2512 1.3866 -2.0466 7 7 3.7225 0.1904 -1.7745 8 14 3.7960 2.2747 -3.5970 9 1 5.0026 3.0889 -3.3030 10 1 4.1156 1.2791 -4.6514 11 1 2.7031 3.1622 -4.0691 12 6 2.1437 2.0516 1.1624 13 8 1.9107 1.4897 2.2178 14 6 2.5460 3.4090 1.1569 15 16 3.0814 4.3091 -0.2553 16 6 3.3224 5.7199 0.6724 17 6 3.0172 5.5124 1.9561 18 6 2.5815 4.2362 2.2559 19 7 2.2175 3.8283 3.5385 20 6 2.1373 4.7316 4.5356 21 8 2.2848 5.9142 4.2974 22 6 1.8696 4.2831 5.9214 23 6 1.6909 2.9278 6.2163 24 6 1.4478 2.5534 7.5236 25 7 1.3735 3.4541 8.4831 26 6 1.5307 4.7416 8.2477 27 6 1.7820 5.2037 6.9705 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.3530 -0.2316 -2.3789 34 1 3.6804 6.6579 0.2745 35 1 3.1042 6.2859 2.7048 36 1 2.0218 2.8945 3.7133 37 1 1.7462 2.1848 5.4345 38 1 1.3126 1.5087 7.7620 39 1 1.4613 5.4447 9.0646 40 1 1.9102 6.2599 6.7850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764874935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:47 Heat of formation + Delta-G solvation = -4.740233 kcal Electronic energy + Delta-G solvation = -27432.065444 eV Core-core repulsion = 23531.411273 eV Total energy + Delta-G solvation = -3900.654171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.10776 -40.94349 -40.28203 -38.28853 -36.76582 -35.32394 -33.88913 -33.53157 -32.33188 -32.22120 -29.93732 -27.18713 -26.63835 -25.08608 -24.42006 -23.89991 -22.45148 -21.68620 -20.58196 -19.61656 -19.54964 -18.12817 -17.44334 -17.17506 -16.80959 -16.73582 -16.63667 -16.52809 -16.01590 -15.81575 -15.62346 -15.10776 -14.89162 -14.80670 -14.51754 -14.48897 -14.38992 -14.00564 -13.58804 -13.50389 -13.12252 -12.96855 -12.82428 -12.73435 -12.60429 -12.05229 -11.74573 -11.67295 -11.55083 -11.30498 -11.08196 -10.76182 -10.60655 -10.55140 -10.26162 -9.61021 -9.32722 -8.70254 -8.38948 -6.38644 -0.63317 -0.15965 0.03325 0.84925 1.32489 1.36726 1.46836 1.49704 1.59767 1.87728 2.00566 2.24330 2.56460 2.78136 2.96870 3.03558 3.28217 3.45158 3.71781 3.85722 3.99459 4.14245 4.34243 4.39487 4.48077 4.58255 4.64458 4.71435 4.75742 4.77360 4.87805 4.91533 5.04710 5.09796 5.23251 5.25981 5.31955 5.53732 5.54271 5.67347 6.03742 6.28036 6.34107 6.79854 6.82169 6.95414 7.42876 7.89726 8.59396 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.003488 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.712128 B = 8024.994042 C = 9398.142482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.116 3.884 3 N -0.444 5.444 4 C -0.362 4.362 5 H 0.107 0.893 6 C 0.034 3.966 7 N -0.875 5.875 8 Si 0.951 3.049 9 H -0.256 1.256 10 H -0.275 1.275 11 H -0.244 1.244 12 C 0.541 3.459 13 O -0.631 6.631 14 C -0.323 4.323 15 S 0.323 5.677 16 C -0.280 4.280 17 C -0.190 4.190 18 C 0.175 3.825 19 N -0.631 5.631 20 C 0.552 3.448 21 O -0.536 6.536 22 C -0.102 4.102 23 C -0.143 4.143 24 C 0.100 3.900 25 N -0.482 5.482 26 C 0.100 3.900 27 C -0.114 4.114 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.280 0.720 34 H 0.188 0.812 35 H 0.161 0.839 36 H 0.425 0.575 37 H 0.142 0.858 38 H 0.190 0.810 39 H 0.199 0.801 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 6.782 7.972 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.007 4.007 3 N -0.161 5.161 4 C -0.495 4.495 5 H 0.123 0.877 6 C -0.174 4.174 7 N -0.508 5.508 8 Si 0.771 3.229 9 H -0.180 1.180 10 H -0.200 1.200 11 H -0.166 1.166 12 C 0.334 3.666 13 O -0.522 6.522 14 C -0.446 4.446 15 S 0.596 5.404 16 C -0.418 4.418 17 C -0.221 4.221 18 C 0.061 3.939 19 N -0.279 5.279 20 C 0.340 3.660 21 O -0.415 6.415 22 C -0.114 4.114 23 C -0.163 4.163 24 C -0.056 4.056 25 N -0.192 5.192 26 C -0.056 4.056 27 C -0.135 4.135 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.206 0.794 35 H 0.178 0.822 36 H 0.269 0.731 37 H 0.160 0.840 38 H 0.207 0.793 39 H 0.216 0.784 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.948 6.551 7.563 10.194 hybrid contribution 0.295 0.104 -0.139 0.342 sum -1.653 6.656 7.424 10.107 Atomic orbital electron populations 1.21965 0.95870 1.01929 1.00602 1.21333 0.93414 0.84297 1.01691 1.43389 1.55767 1.12232 1.04675 1.19573 1.26219 1.06192 0.97525 0.87658 1.26405 0.93626 0.95606 1.01797 1.69879 1.28228 1.14227 1.38453 0.85526 0.80635 0.79322 0.77390 1.17982 1.20028 1.16648 1.16376 0.80121 0.85749 0.84357 1.90430 1.59600 1.70590 1.31573 1.23173 1.22577 0.99927 0.98915 1.84160 1.56422 0.94792 1.04982 1.26761 1.05332 1.09292 1.00369 1.20308 1.06806 0.96415 0.98577 1.17346 0.98671 0.93778 0.84073 1.43393 1.64373 1.13815 1.06286 1.18782 0.76482 0.85292 0.85397 1.90593 1.49825 1.17240 1.83804 1.20238 1.03097 0.95556 0.92463 1.22598 0.98526 0.95158 1.00066 1.23177 0.94229 1.00955 0.87284 1.67674 1.11344 1.03364 1.36784 1.23357 0.93840 0.92445 0.95981 1.22497 0.96784 1.01597 0.92584 0.94603 0.92947 0.90472 0.89248 0.94394 0.91029 0.79437 0.82195 0.73093 0.84027 0.79317 0.78390 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 10.20 71.98 0.73 -4.86 16 2 C 0.12 5.32 5.58 86.38 0.48 5.80 16 3 N -0.44 -21.60 2.46 -645.59 -1.59 -23.18 16 4 C -0.36 -16.85 6.47 84.08 0.54 -16.31 16 5 H 0.11 4.68 5.63 -14.76 -0.08 4.60 16 6 C 0.03 1.57 5.34 84.93 0.45 2.02 16 7 N -0.87 -42.85 11.38 21.67 0.25 -42.60 16 8 Si 0.95 34.70 29.56 68.60 2.03 36.72 16 9 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 10 H -0.28 -9.98 7.11 99.48 0.71 -9.28 16 11 H -0.24 -8.25 7.11 99.48 0.71 -7.55 16 12 C 0.54 26.53 7.40 85.07 0.63 27.16 16 13 O -0.63 -31.61 14.15 -4.72 -0.07 -31.68 16 14 C -0.32 -14.34 6.15 22.94 0.14 -14.20 16 15 S 0.32 12.13 18.24 -56.49 -1.03 11.10 16 16 C -0.28 -9.28 10.89 66.76 0.73 -8.56 16 17 C -0.19 -7.13 9.04 21.19 0.19 -6.94 16 18 C 0.17 7.24 6.62 37.76 0.25 7.49 16 19 N -0.63 -24.00 5.30 -307.73 -1.63 -25.63 16 20 C 0.55 18.85 7.73 86.86 0.67 19.52 16 21 O -0.54 -19.79 13.31 -3.81 -0.05 -19.84 16 22 C -0.10 -2.79 5.91 -19.88 -0.12 -2.91 16 23 C -0.14 -3.50 9.61 22.64 0.22 -3.28 16 24 C 0.10 2.06 11.17 84.67 0.95 3.01 16 25 N -0.48 -10.27 10.34 -196.01 -2.03 -12.30 16 26 C 0.10 1.83 11.17 84.67 0.95 2.77 16 27 C -0.11 -2.49 9.68 22.63 0.22 -2.27 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.09 4.31 5.98 -2.39 -0.01 4.29 16 32 H 0.04 1.82 7.53 -2.39 -0.02 1.80 16 33 H 0.28 12.84 8.31 -92.71 -0.77 12.07 16 34 H 0.19 4.76 8.06 -2.91 -0.02 4.74 16 35 H 0.16 6.01 5.36 -2.91 -0.02 5.99 16 36 H 0.43 16.25 4.43 -92.71 -0.41 15.84 16 37 H 0.14 3.55 6.55 -2.91 -0.02 3.53 16 38 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.16 3.09 7.74 -2.91 -0.02 3.07 16 Total: -1.00 -61.07 349.14 3.56 -57.52 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: 0.64 Total: 41.45 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 7.04 Total: 8.45 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -5.00 Total: -103.71 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.12 Total: -51.52 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.72 kcal Atomic # 16 Polarization: 12.13 SS G_CDS: -1.03 Total: 11.10 kcal Total: -61.07 3.56 -57.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764874935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.776 kcal (2) G-P(sol) polarization free energy of solvation -61.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds