Wall clock time and date at job start Wed Apr 1 2020 02:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35661 * 116.99938 * 2 1 4 4 C 1.38779 * 119.63964 * 179.97438 * 3 2 1 5 5 C 1.38593 * 119.27970 * 180.02562 * 4 3 2 6 6 C 1.38507 * 118.56652 * 359.97438 * 5 4 3 7 7 C 1.38979 * 119.22058 * 0.02562 * 6 5 4 8 8 N 1.38995 * 119.66977 * 179.97438 * 7 6 5 9 9 N 1.40097 * 120.00058 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99928 * 180.02562 * 9 8 7 11 11 O 1.21608 * 120.00323 * 359.97438 * 10 9 8 12 12 C 1.47440 * 120.00027 * 180.02562 * 10 9 8 13 13 C 1.39678 * 120.21163 * 359.95705 * 12 10 9 14 14 C 1.37809 * 119.93445 * 180.02562 * 13 12 10 15 15 C 1.38651 * 120.38095 * 359.97438 * 14 13 12 16 16 C 1.37910 * 120.44302 * 0.02562 * 15 14 13 17 17 C 1.39120 * 120.04659 * 359.97438 * 16 15 14 18 18 S 1.76203 * 120.18582 * 180.02562 * 17 16 15 19 19 C 1.76194 * 100.00117 * 6.84734 * 18 17 16 20 20 H 1.08003 * 120.00473 * 5.66452 * 19 18 17 21 21 C 1.38806 * 119.99846 * 185.65635 * 19 18 17 22 22 N 1.31545 * 120.00145 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00034 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47114 * 89.99834 * 23 21 19 25 25 H 1.48490 * 109.47340 * 209.99876 * 23 21 19 26 26 H 1.48502 * 109.47181 * 330.00165 * 23 21 19 27 27 N 1.32328 * 119.64141 * 0.27936 * 3 2 1 28 28 H 1.09003 * 109.47372 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47279 * 299.99542 * 1 2 3 30 30 H 1.09000 * 109.47414 * 59.99785 * 1 2 3 31 31 H 1.08003 * 120.36270 * 0.04468 * 4 3 2 32 32 H 1.08000 * 120.71954 * 179.97438 * 5 4 3 33 33 H 1.07993 * 120.38929 * 180.02562 * 6 5 4 34 34 H 0.96997 * 119.99910 * 0.02562 * 8 7 6 35 35 H 0.97006 * 120.00311 * 0.02562 * 9 8 7 36 36 H 1.07998 * 120.03179 * 0.03998 * 13 12 10 37 37 H 1.07995 * 119.80491 * 180.27401 * 14 13 12 38 38 H 1.08007 * 119.77797 * 180.02562 * 15 14 13 39 39 H 1.07998 * 119.97949 * 179.97438 * 16 15 14 40 40 H 0.97000 * 120.00271 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4312 1.2727 0.0005 5 6 4.0526 2.5115 0.0011 6 6 3.2622 3.6489 0.0005 7 6 1.8790 3.5139 0.0000 8 7 1.0769 4.6491 -0.0001 9 7 -0.3182 4.5211 -0.0001 10 6 -1.0959 5.6219 -0.0006 11 8 -0.5866 6.7262 -0.0006 12 6 -2.5641 5.4872 0.0000 13 6 -3.1537 4.2209 0.0002 14 6 -4.5266 4.1017 0.0002 15 6 -5.3288 5.2326 0.0005 16 6 -4.7632 6.4904 0.0003 17 6 -3.3792 6.6319 0.0003 18 16 -2.6527 8.2371 0.0007 19 6 -4.0960 9.2262 0.2079 20 1 -5.0525 8.7559 0.3822 21 6 -4.0037 10.6099 0.1474 22 7 -2.8386 11.1827 -0.0642 23 14 -5.5338 11.6585 0.3677 24 1 -5.7096 11.9815 1.8065 25 1 -5.3877 12.9165 -0.4076 26 1 -6.7206 10.9112 -0.1204 27 7 1.3172 2.3140 0.0056 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.0195 0.3669 0.0002 32 1 5.1299 2.5883 0.0019 33 1 3.7155 4.6291 0.0005 34 1 1.4832 5.5299 -0.0001 35 1 -0.7244 3.6402 0.0003 36 1 -2.5343 3.3363 0.0006 37 1 -4.9803 3.1217 0.0048 38 1 -6.4037 5.1279 0.0009 39 1 -5.3951 7.3663 0.0001 40 1 -2.7742 12.1497 -0.1069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781023640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:09 Heat of formation + Delta-G solvation = 18.802495 kcal Electronic energy + Delta-G solvation = -26249.600738 eV Core-core repulsion = 22349.967455 eV Total energy + Delta-G solvation = -3899.633282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70717 -41.01433 -39.32529 -38.82776 -36.81816 -34.77818 -33.65697 -33.07588 -31.84984 -31.77214 -29.70224 -27.85536 -27.74654 -25.02858 -24.21860 -23.68864 -23.29430 -21.98966 -20.43993 -19.52514 -19.02740 -18.57010 -17.65651 -17.17247 -16.99369 -16.95168 -16.82747 -16.39804 -16.22935 -16.05749 -15.56392 -15.35916 -15.01373 -14.88797 -14.75154 -14.51507 -14.13500 -13.69044 -13.34142 -13.10310 -13.00630 -12.96396 -12.91947 -12.60903 -12.58548 -12.06708 -11.89345 -11.63073 -11.45483 -11.36686 -10.85619 -10.78159 -10.44594 -10.04354 -10.00333 -9.83253 -8.56928 -8.46795 -8.36196 -6.25572 -0.06849 0.36754 0.44713 0.50134 0.86385 1.26412 1.36490 1.44995 1.62057 1.88934 2.15075 2.20327 2.75277 2.84432 2.88180 2.99567 3.22381 3.59145 3.90941 3.96570 4.10307 4.23760 4.27097 4.43031 4.48764 4.50574 4.54669 4.59063 4.62848 4.79599 4.83122 5.03602 5.04802 5.29422 5.38025 5.38575 5.42977 5.52451 5.64730 5.74604 5.99001 6.07478 6.14249 6.37182 6.50200 6.94909 6.95104 7.32729 8.58987 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002632 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.839274 B =10637.260416 C =12194.119424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.316 6.316 3 C 0.348 3.652 4 C -0.252 4.252 5 C 0.013 3.987 6 C -0.269 4.269 7 C 0.423 3.577 8 N -0.519 5.519 9 N -0.507 5.507 10 C 0.547 3.453 11 O -0.552 6.552 12 C -0.174 4.174 13 C -0.055 4.055 14 C -0.154 4.154 15 C -0.064 4.064 16 C -0.172 4.172 17 C -0.067 4.067 18 S 0.071 5.929 19 C -0.602 4.602 20 H 0.096 0.904 21 C 0.025 3.975 22 N -0.904 5.904 23 Si 0.993 3.007 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.257 1.257 27 N -0.616 5.616 28 H 0.122 0.878 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.154 0.846 34 H 0.442 0.558 35 H 0.434 0.566 36 H 0.152 0.848 37 H 0.168 0.832 38 H 0.153 0.847 39 H 0.123 0.877 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 -23.464 0.057 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.223 6.223 3 C 0.169 3.831 4 C -0.275 4.275 5 C -0.012 4.012 6 C -0.295 4.295 7 C 0.188 3.812 8 N -0.249 5.249 9 N -0.255 5.255 10 C 0.336 3.664 11 O -0.430 6.430 12 C -0.189 4.189 13 C -0.075 4.075 14 C -0.177 4.177 15 C -0.085 4.085 16 C -0.197 4.197 17 C -0.186 4.186 18 S 0.330 5.670 19 C -0.749 4.749 20 H 0.114 0.886 21 C -0.181 4.181 22 N -0.539 5.539 23 Si 0.814 3.186 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.180 1.180 27 N -0.351 5.351 28 H 0.140 0.860 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.176 0.824 32 H 0.198 0.802 33 H 0.171 0.829 34 H 0.287 0.713 35 H 0.279 0.721 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.543 -22.171 -0.066 23.419 hybrid contribution -1.445 1.020 0.182 1.778 sum 6.098 -21.151 0.116 22.013 Atomic orbital electron populations 1.23052 0.76188 1.04676 1.02166 1.86248 1.24131 1.24233 1.87658 1.19729 0.89937 0.83280 0.90143 1.21115 0.91055 1.00829 1.14527 1.21508 1.01729 0.89241 0.88752 1.21336 0.90224 1.02373 1.15581 1.18025 0.87859 0.84097 0.91171 1.43393 0.92956 1.07315 1.81248 1.44481 0.94585 1.09961 1.76500 1.18564 0.87223 0.83239 0.77333 1.90798 1.74691 1.26172 1.51386 1.19077 0.89890 0.94199 1.15755 1.21383 0.96464 0.94227 0.95448 1.21311 0.92548 0.99730 1.04090 1.21577 1.01389 0.91140 0.94414 1.21473 0.93060 0.99645 1.05561 1.22935 0.97516 0.99272 0.98873 1.84879 1.10272 0.91385 1.80416 1.24251 0.98223 0.95174 1.57245 0.88605 1.26136 1.00672 0.98443 0.92812 1.70116 1.26225 1.11808 1.45762 0.85041 0.77500 0.77241 0.78837 1.19179 1.19866 1.18030 1.66338 1.41852 0.97920 1.29020 0.85974 0.92593 0.92594 0.82431 0.80203 0.82864 0.71332 0.72146 0.83062 0.81485 0.82927 0.85982 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.38 113.37 1.18 1.66 16 2 O -0.32 -6.17 10.47 -89.77 -0.94 -7.11 16 3 C 0.35 7.44 7.48 84.75 0.63 8.08 16 4 C -0.25 -4.16 10.03 22.48 0.23 -3.94 16 5 C 0.01 0.18 10.16 22.42 0.23 0.40 16 6 C -0.27 -4.91 9.93 22.51 0.22 -4.69 16 7 C 0.42 10.21 7.59 133.00 1.01 11.21 16 8 N -0.52 -14.52 6.42 -55.48 -0.36 -14.87 16 9 N -0.51 -15.40 6.24 -175.87 -1.10 -16.49 16 10 C 0.55 21.47 7.87 86.67 0.68 22.15 16 11 O -0.55 -26.46 13.61 -4.06 -0.06 -26.52 16 12 C -0.17 -6.67 5.89 -19.95 -0.12 -6.79 16 13 C -0.06 -1.50 9.53 22.52 0.21 -1.29 16 14 C -0.15 -3.67 10.02 22.27 0.22 -3.45 16 15 C -0.06 -1.85 10.02 22.29 0.22 -1.63 16 16 C -0.17 -6.94 9.22 22.40 0.21 -6.74 16 17 C -0.07 -3.10 6.15 23.04 0.14 -2.96 16 18 S 0.07 4.03 18.56 -56.49 -1.05 2.98 16 19 C -0.60 -34.62 9.00 67.96 0.61 -34.01 16 20 H 0.10 5.17 4.98 -2.91 -0.01 5.15 16 21 C 0.03 1.43 5.49 84.87 0.47 1.89 16 22 N -0.90 -54.76 13.22 21.64 0.29 -54.48 16 23 Si 0.99 43.37 29.55 68.60 2.03 45.39 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 27 N -0.62 -14.70 8.22 -306.34 -2.52 -17.22 16 28 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.06 0.83 8.11 -2.39 -0.02 0.81 16 31 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.44 12.51 7.99 -213.33 -1.70 10.81 16 35 H 0.43 11.06 5.98 -213.32 -1.27 9.78 16 36 H 0.15 2.88 6.40 -2.91 -0.02 2.86 16 37 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 39 H 0.12 5.32 5.04 -2.91 -0.01 5.30 16 40 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -78.23 359.71 0.60 -77.63 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -1.85 Total: 30.76 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 6.15 Total: -20.08 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -3.68 Total: -103.06 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.00 Total: -33.63 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.05 Total: 2.98 kcal Total: -78.23 0.60 -77.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781023640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.434 kcal (2) G-P(sol) polarization free energy of solvation -78.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds