Wall clock time and date at job start Wed Apr 1 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36019 * 117.00067 * 2 1 4 4 C 1.39258 * 120.39027 * 179.97438 * 3 2 1 5 5 C 1.38304 * 118.46042 * 179.76599 * 4 3 2 6 6 C 1.39091 * 119.15281 * 0.47170 * 5 4 3 7 7 N 1.39249 * 119.64725 * 179.79088 * 6 5 4 8 8 N 1.40097 * 119.99917 * 179.72572 * 7 6 5 9 9 C 1.34775 * 119.99928 * 180.02562 * 8 7 6 10 10 O 1.21608 * 120.00323 * 359.97438 * 9 8 7 11 11 C 1.47440 * 120.00027 * 180.02562 * 9 8 7 12 12 C 1.39678 * 120.21163 * 359.95705 * 11 9 8 13 13 C 1.37809 * 119.93445 * 180.02562 * 12 11 9 14 14 C 1.38651 * 120.38095 * 359.97438 * 13 12 11 15 15 C 1.37910 * 120.44302 * 0.02562 * 14 13 12 16 16 C 1.39120 * 120.04659 * 359.97438 * 15 14 13 17 17 S 1.76203 * 120.18582 * 180.02562 * 16 15 14 18 18 C 1.76194 * 100.00117 * 6.84734 * 17 16 15 19 19 H 1.08003 * 120.00473 * 5.66452 * 18 17 16 20 20 C 1.38806 * 119.99846 * 185.65635 * 18 17 16 21 21 N 1.31545 * 120.00145 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00034 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47114 * 89.99834 * 22 20 18 24 24 H 1.48490 * 109.47340 * 209.99876 * 22 20 18 25 25 H 1.48502 * 109.47181 * 330.00165 * 22 20 18 26 26 N 1.32334 * 120.70521 * 359.51765 * 6 5 4 27 27 C 1.32006 * 121.67415 * 0.25053 * 26 6 5 28 28 H 1.09001 * 109.47101 * 300.00438 * 1 2 3 29 29 H 1.08995 * 109.46781 * 60.00784 * 1 2 3 30 30 H 1.08998 * 109.46707 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.77353 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.42473 * 180.24818 * 5 4 3 33 33 H 0.96997 * 120.00051 * 359.72893 * 7 6 5 34 34 H 0.97006 * 120.00311 * 0.02562 * 8 7 6 35 35 H 1.07998 * 120.03179 * 0.03998 * 12 11 9 36 36 H 1.07995 * 119.80491 * 180.27401 * 13 12 11 37 37 H 1.08007 * 119.77797 * 180.02562 * 14 13 12 38 38 H 1.07998 * 119.97949 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00271 * 179.97438 * 21 20 18 40 40 H 1.07999 * 119.60311 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4367 1.2943 0.0005 5 6 4.0227 2.5470 -0.0044 6 6 3.2096 3.6755 0.0002 7 7 3.7887 4.9418 -0.0003 8 7 2.9767 6.0834 -0.0015 9 6 3.5373 7.3091 -0.0025 10 8 4.7479 7.4241 -0.0020 11 6 2.6827 8.5106 -0.0032 12 6 1.2917 8.3837 -0.0036 13 6 0.4984 9.5106 -0.0047 14 6 1.0728 10.7725 -0.0049 15 6 2.4445 10.9159 -0.0045 16 6 3.2625 9.7906 -0.0033 17 16 5.0154 9.9696 -0.0021 18 6 5.1447 11.7147 0.2040 19 1 4.2572 12.3052 0.3774 20 6 6.3872 12.3305 0.1438 21 7 7.4683 11.6112 -0.0668 22 14 6.5244 14.1805 0.3630 23 1 6.7144 14.4957 1.8017 24 1 7.6857 14.6861 -0.4120 25 1 5.2820 14.8304 -0.1261 26 7 1.8914 3.5585 -0.0003 27 6 1.3002 2.3782 -0.0003 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0431 0.4007 0.0005 32 1 5.0980 2.6478 -0.0082 33 1 4.7544 5.0335 0.0000 34 1 2.0110 5.9918 -0.0015 35 1 0.8384 7.4035 -0.0028 36 1 -0.5768 9.4101 -0.0006 37 1 0.4418 11.6491 -0.0053 38 1 2.8839 11.9024 -0.0050 39 1 8.3365 12.0415 -0.1093 40 1 0.2217 2.3217 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781530941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:13 Heat of formation + Delta-G solvation = 42.299618 kcal Electronic energy + Delta-G solvation = -25814.782096 eV Core-core repulsion = 21916.167725 eV Total energy + Delta-G solvation = -3898.614370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83481 -39.62746 -38.46282 -37.52195 -35.48141 -32.79578 -32.66820 -32.14673 -30.39421 -30.32457 -28.30324 -27.46930 -25.86602 -24.04333 -23.12846 -22.59917 -21.93540 -20.54763 -18.93094 -18.31546 -17.77138 -17.57106 -16.76884 -16.30021 -16.07935 -15.64908 -15.17419 -14.89177 -14.74097 -14.55270 -14.24036 -14.07428 -14.02076 -13.79945 -13.53167 -13.08426 -12.95628 -12.89635 -12.33962 -12.19796 -11.96008 -11.63679 -11.26762 -11.22335 -11.13947 -10.97946 -10.36286 -9.97149 -9.96103 -9.77602 -9.68219 -9.54858 -9.02959 -8.77923 -8.42166 -8.15941 -7.23710 -6.57439 -6.50144 -4.20844 0.95464 1.20944 1.47794 1.97835 2.09941 3.00940 3.07575 3.10834 3.17625 3.37266 3.38294 3.66905 3.83704 4.03043 4.42490 4.46902 4.56150 4.69837 4.82384 4.83128 4.91274 5.03856 5.09339 5.15392 5.26586 5.33018 5.41727 5.56919 5.63944 5.76737 5.87064 6.06691 6.18317 6.32457 6.52622 6.73758 6.82113 6.98585 7.04408 7.09521 7.33693 7.40953 7.54465 7.74807 8.03179 8.12455 8.73285 8.96271 10.53172 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.020484 B = 0.002285 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.602757 B =12251.751192 C =13593.137395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.007 3.993 4 C -0.053 4.053 5 C -0.193 4.193 6 C 0.382 3.618 7 N -0.514 5.514 8 N -0.524 5.524 9 C 0.552 3.448 10 O -0.514 6.514 11 C -0.170 4.170 12 C -0.060 4.060 13 C -0.184 4.184 14 C -0.074 4.074 15 C -0.152 4.152 16 C -0.054 4.054 17 S 0.188 5.812 18 C -0.596 4.596 19 H 0.092 0.908 20 C 0.083 3.917 21 N -0.857 5.857 22 Si 0.920 3.080 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.268 1.268 26 N -0.519 5.519 27 C 0.076 3.924 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.442 0.558 34 H 0.426 0.574 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.141 0.859 39 H 0.275 0.725 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 -18.340 -0.068 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C -0.042 4.042 4 C -0.080 4.080 5 C -0.220 4.220 6 C 0.145 3.855 7 N -0.244 5.244 8 N -0.274 5.274 9 C 0.342 3.658 10 O -0.390 6.390 11 C -0.187 4.187 12 C -0.080 4.080 13 C -0.209 4.209 14 C -0.096 4.096 15 C -0.177 4.177 16 C -0.175 4.175 17 S 0.453 5.547 18 C -0.742 4.742 19 H 0.110 0.890 20 C -0.128 4.128 21 N -0.490 5.490 22 Si 0.745 3.255 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.192 1.192 26 N -0.238 5.238 27 C -0.082 4.082 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.287 0.713 34 H 0.268 0.732 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.158 0.842 39 H 0.085 0.915 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.562 -18.238 -0.198 21.595 hybrid contribution -0.901 1.429 0.233 1.705 sum -12.463 -16.809 0.035 20.925 Atomic orbital electron populations 1.23034 0.78594 1.03964 1.01316 1.86057 1.21057 1.25970 1.89886 1.19661 0.93037 0.85596 1.05932 1.20589 0.91594 0.97788 0.97984 1.21047 1.00978 0.90287 1.09659 1.18164 0.89046 0.84136 0.94178 1.43122 1.05912 0.94308 1.81065 1.44779 1.07127 0.97092 1.78362 1.18453 0.88470 0.81349 0.77523 1.90795 1.13692 1.84859 1.49670 1.18742 0.92541 0.90555 1.16873 1.20933 0.92088 0.97978 0.96990 1.20640 0.98751 0.92454 1.09045 1.21112 0.94746 0.96873 0.96884 1.21436 0.93096 0.99039 1.04126 1.23044 1.03895 0.93628 0.96892 1.84721 0.89849 1.05264 1.74883 1.24055 0.96925 0.96090 1.57173 0.89044 1.25108 0.94574 1.00030 0.93075 1.69966 0.98845 1.36679 1.43473 0.86130 0.78347 0.82263 0.78722 1.19841 1.20463 1.19194 1.66910 1.09586 1.27567 1.19768 1.22471 0.99931 0.86156 0.99618 0.92694 0.92687 0.88282 0.83850 0.83853 0.71341 0.73156 0.87001 0.86862 0.86856 0.84212 0.91474 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.82 101.05 0.99 1.13 16 2 O -0.32 -2.83 10.51 -19.80 -0.21 -3.04 16 3 C 0.01 0.07 6.71 -39.12 -0.26 -0.19 16 4 C -0.05 -0.49 10.12 -39.18 -0.40 -0.89 16 5 C -0.19 -1.94 9.93 -39.24 -0.39 -2.33 16 6 C 0.38 4.77 7.60 -154.85 -1.18 3.59 16 7 N -0.51 -7.23 6.43 31.16 0.20 -7.03 16 8 N -0.52 -8.19 6.24 30.44 0.19 -8.00 16 9 C 0.55 10.70 7.87 -12.51 -0.10 10.60 16 10 O -0.51 -11.63 13.61 5.27 0.07 -11.56 16 11 C -0.17 -3.33 5.89 -104.75 -0.62 -3.95 16 12 C -0.06 -0.95 9.53 -39.20 -0.37 -1.32 16 13 C -0.18 -2.79 10.02 -39.59 -0.40 -3.19 16 14 C -0.07 -1.23 10.02 -39.55 -0.40 -1.63 16 15 C -0.15 -3.11 9.22 -39.37 -0.36 -3.47 16 16 C -0.05 -1.22 6.15 -38.39 -0.24 -1.46 16 17 S 0.19 4.95 18.56 -107.50 -2.00 2.95 16 18 C -0.60 -16.17 9.00 30.94 0.28 -15.90 16 19 H 0.09 2.35 4.98 -52.48 -0.26 2.09 16 20 C 0.08 2.25 5.49 -17.46 -0.10 2.16 16 21 N -0.86 -24.39 13.22 55.49 0.73 -23.66 16 22 Si 0.92 20.44 29.55 -169.99 -5.02 15.42 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 N -0.52 -6.44 9.37 -12.28 -0.12 -6.55 16 27 C 0.08 0.77 10.21 -17.39 -0.18 0.59 16 28 H 0.05 0.24 7.67 -51.93 -0.40 -0.16 16 29 H 0.05 0.24 7.67 -51.93 -0.40 -0.16 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 33 H 0.44 6.04 7.99 -182.60 -1.46 4.58 16 34 H 0.43 5.93 5.98 -182.59 -1.09 4.84 16 35 H 0.11 1.41 6.40 -52.49 -0.34 1.07 16 36 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.14 2.97 5.04 -52.49 -0.26 2.71 16 39 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.16 1.16 6.30 -52.49 -0.33 0.83 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -32.75 357.11 -10.26 -43.02 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.79 Total: 9.31 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -3.71 Total: -16.24 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 1.01 Total: -45.25 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.14 Total: -14.59 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -2.00 Total: 2.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.75 -10.26 -43.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781530941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.319 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds