Wall clock time and date at job start Wed Apr 1 2020 02:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42910 * 113.99996 * 2 1 4 4 C 1.52991 * 109.47189 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47415 * 65.00246 * 4 3 2 6 6 C 1.46507 * 119.99793 * 269.99908 * 5 4 3 7 7 C 1.50697 * 109.47204 * 273.08008 * 6 5 4 8 8 H 1.07997 * 120.00217 * 4.59009 * 7 6 5 9 9 C 1.37876 * 120.00040 * 184.58971 * 7 6 5 10 10 N 1.31518 * 119.99779 * 5.08513 * 9 7 6 11 11 Si 1.86800 * 120.00167 * 185.08634 * 9 7 6 12 12 H 1.48497 * 109.46877 * 5.00254 * 11 9 7 13 13 H 1.48501 * 109.47005 * 125.00239 * 11 9 7 14 14 H 1.48503 * 109.47007 * 245.00260 * 11 9 7 15 15 C 1.34775 * 120.00241 * 89.99601 * 5 4 3 16 16 O 1.21282 * 119.99796 * 4.25093 * 15 5 4 17 17 C 1.50693 * 120.00030 * 184.24616 * 15 5 4 18 18 H 1.09004 * 109.47497 * 0.63513 * 17 15 5 19 19 O 1.42909 * 109.47210 * 120.63708 * 17 15 5 20 20 C 1.50700 * 109.47338 * 240.63692 * 17 15 5 21 21 C 1.38234 * 119.99720 * 268.18263 * 20 17 15 22 22 C 1.38200 * 120.03590 * 180.02562 * 21 20 17 23 23 C 1.38387 * 120.04026 * 359.97438 * 22 21 20 24 24 Cl 1.73597 * 120.00227 * 179.97438 * 23 22 21 25 25 C 1.38294 * 119.99849 * 359.97438 * 23 22 21 26 26 C 1.38438 * 120.00095 * 87.90798 * 20 17 15 27 27 F 1.35101 * 120.01815 * 0.02562 * 26 20 17 28 28 H 1.09001 * 109.47030 * 299.99527 * 1 2 3 29 29 H 1.08991 * 109.47598 * 59.99700 * 1 2 3 30 30 H 1.09001 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46366 * 60.00372 * 3 2 1 32 32 H 1.08999 * 109.46727 * 300.00839 * 3 2 1 33 33 H 1.09004 * 109.47011 * 305.00279 * 4 3 2 34 34 H 1.09005 * 109.47583 * 185.00077 * 4 3 2 35 35 H 1.09001 * 109.46831 * 33.08460 * 6 5 4 36 36 H 1.09008 * 109.46953 * 153.07857 * 6 5 4 37 37 H 0.97002 * 119.99656 * 179.97438 * 10 9 7 38 38 H 0.96700 * 113.99528 * 59.99310 * 19 17 15 39 39 H 1.07998 * 119.98246 * 0.02562 * 21 20 17 40 40 H 1.08000 * 119.98031 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.02010 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.1052 -0.8920 -1.3428 7 6 5.4764 -1.3043 -0.8729 8 1 6.1543 -0.5658 -0.4711 9 6 5.8656 -2.6244 -0.9560 10 7 5.0808 -3.5060 -1.5361 11 14 7.5074 -3.1607 -0.2445 12 1 8.1418 -2.0146 0.4549 13 1 7.2909 -4.2700 0.7186 14 1 8.3947 -3.6238 -1.3416 15 6 4.2614 1.3339 -2.3218 16 8 4.2288 2.5424 -2.2253 17 6 4.6216 0.6925 -3.6370 18 1 4.5877 -0.3921 -3.5337 19 8 3.6900 1.1049 -4.6391 20 6 6.0112 1.1155 -4.0384 21 6 6.1909 2.2292 -4.8373 22 6 7.4648 2.6176 -5.2064 23 6 8.5621 1.8924 -4.7761 24 17 10.1618 2.3807 -5.2408 25 6 8.3842 0.7786 -3.9759 26 6 7.1081 0.3922 -3.6024 27 9 6.9332 -0.6934 -2.8174 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6884 1.8464 -0.8899 33 1 3.8514 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 3.3490 -1.3635 -0.7152 36 1 3.9660 -1.2059 -2.3774 37 1 5.3548 -4.4347 -1.5948 38 1 3.6664 2.0606 -4.7846 39 1 5.3352 2.7961 -5.1733 40 1 7.6041 3.4876 -5.8309 41 1 9.2403 0.2121 -3.6402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813439207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:35 Heat of formation + Delta-G solvation = -141.349977 kcal Electronic energy + Delta-G solvation = -29458.131053 eV Core-core repulsion = 25086.447356 eV Total energy + Delta-G solvation = -4371.683697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.24646 -40.03809 -38.73870 -37.53909 -36.65660 -35.96136 -35.01489 -32.60806 -31.39367 -30.63021 -29.94197 -27.14337 -26.76777 -25.71392 -23.01181 -22.90372 -22.65372 -21.48923 -19.00230 -17.90448 -17.17481 -16.72093 -16.62971 -16.26856 -16.01941 -15.80511 -15.30305 -15.08665 -14.91453 -14.67373 -14.49450 -14.16304 -13.88168 -13.66606 -13.18870 -13.08115 -12.95755 -12.56072 -12.32200 -12.08792 -11.91575 -11.70533 -11.55168 -11.42785 -11.29471 -11.20942 -11.03675 -10.91303 -10.87223 -10.69657 -10.36273 -10.06880 -9.69581 -9.44144 -9.20211 -8.81344 -8.50412 -8.27635 -7.79756 -6.11065 -4.13232 1.01339 1.23928 2.00729 3.03085 3.26056 3.34822 3.38269 3.46557 3.78369 4.11542 4.39410 4.51495 4.63395 4.73367 4.82568 4.99710 5.13579 5.25169 5.27792 5.35260 5.46521 5.58205 5.61423 5.62622 5.64140 5.77403 5.83833 5.98088 6.00270 6.08168 6.15746 6.30054 6.35639 6.75670 6.87459 7.25952 7.43789 7.51425 7.63468 7.84212 8.09359 8.22508 8.70257 8.91415 9.50303 10.96468 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.004833 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.686350 B = 5791.725057 C = 7812.450612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.049 3.951 4 C 0.119 3.881 5 N -0.573 5.573 6 C 0.232 3.768 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.073 3.927 10 N -0.888 5.888 11 Si 0.886 3.114 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.282 1.282 15 C 0.496 3.504 16 O -0.572 6.572 17 C 0.128 3.872 18 H 0.153 0.847 19 O -0.534 6.534 20 C -0.138 4.138 21 C -0.058 4.058 22 C -0.132 4.132 23 C -0.005 4.005 24 Cl -0.069 7.069 25 C -0.160 4.160 26 C 0.138 3.862 27 F -0.078 7.078 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.374 0.626 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 10.083 -4.452 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.302 5.302 6 C 0.112 3.888 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.130 4.130 10 N -0.527 5.527 11 Si 0.714 3.286 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.208 1.208 15 C 0.282 3.718 16 O -0.454 6.454 17 C 0.066 3.934 18 H 0.170 0.830 19 O -0.339 6.339 20 C -0.140 4.140 21 C -0.076 4.076 22 C -0.150 4.150 23 C -0.032 4.032 24 Cl -0.040 7.040 25 C -0.179 4.179 26 C 0.118 3.882 27 F -0.055 7.055 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.222 0.778 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.253 9.658 -4.467 10.644 hybrid contribution 1.010 0.174 0.596 1.186 sum 0.758 9.832 -3.871 10.594 Atomic orbital electron populations 1.22683 0.82077 1.02467 0.99176 1.88058 1.18742 1.27309 1.95200 1.23002 0.95071 0.85044 0.99772 1.21387 0.91179 0.99750 0.88177 1.48222 1.61991 1.10275 1.09757 1.19698 0.97857 0.72327 0.98871 1.21396 0.99313 0.93541 1.42011 0.92179 1.24787 0.96935 0.96416 0.94835 1.69929 1.37142 1.03079 1.42538 0.86621 0.84216 0.78655 0.79105 1.19698 1.21082 1.20771 1.20928 0.77324 0.87064 0.86466 1.90592 1.55515 1.14335 1.84994 1.20994 0.84192 1.02874 0.85343 0.83013 1.86706 1.61585 1.28558 1.57066 1.20351 0.95236 0.97400 1.01050 1.20633 0.96969 0.94346 0.95673 1.20905 0.90766 1.00914 1.02465 1.20585 0.86194 0.96587 0.99825 1.98362 1.23471 1.91098 1.91108 1.21023 0.97163 0.98361 1.01367 1.17607 0.92325 0.86542 0.91729 1.92012 1.95537 1.49040 1.68955 0.94731 0.94589 0.89808 0.93105 0.93468 0.89131 0.89380 0.93160 0.94015 0.92686 0.77794 0.84412 0.84495 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.55 9.48 -35.23 -0.33 -6.88 16 3 C 0.05 0.78 6.28 37.15 0.23 1.01 16 4 C 0.12 2.14 5.86 -4.05 -0.02 2.12 16 5 N -0.57 -11.90 2.42 -175.06 -0.42 -12.33 16 6 C 0.23 5.46 4.84 -5.19 -0.03 5.43 16 7 C -0.52 -13.23 6.46 -34.44 -0.22 -13.45 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.07 1.91 4.96 -17.82 -0.09 1.82 16 10 N -0.89 -24.29 13.29 55.43 0.74 -23.56 16 11 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.50 10.06 6.71 -10.99 -0.07 9.99 16 16 O -0.57 -11.97 16.43 -0.67 -0.01 -11.98 16 17 C 0.13 2.40 3.13 -29.04 -0.09 2.31 16 18 H 0.15 3.25 4.80 -51.93 -0.25 3.00 16 19 O -0.53 -8.91 13.03 -41.45 -0.54 -9.45 16 20 C -0.14 -2.40 4.95 -104.55 -0.52 -2.92 16 21 C -0.06 -0.82 9.31 -39.60 -0.37 -1.19 16 22 C -0.13 -1.69 9.83 -39.54 -0.39 -2.08 16 23 C -0.01 -0.07 6.32 -39.51 -0.25 -0.32 16 24 Cl -0.07 -0.84 28.96 -51.86 -1.50 -2.34 16 25 C -0.16 -2.52 9.81 -39.48 -0.39 -2.90 16 26 C 0.14 2.54 7.24 -39.42 -0.29 2.26 16 27 F -0.08 -1.69 12.75 2.25 0.03 -1.67 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 34 H 0.09 1.52 7.37 -51.93 -0.38 1.14 16 35 H 0.05 1.28 7.07 -51.93 -0.37 0.91 16 36 H 0.04 1.05 5.56 -51.92 -0.29 0.76 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.37 4.92 7.22 45.56 0.33 5.25 16 39 H 0.14 1.58 6.45 -52.49 -0.34 1.24 16 40 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -29.50 363.34 -7.18 -36.68 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.22 Total: 6.71 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.38 Total: 3.64 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.31 Total: -35.88 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.89 Total: -28.31 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.03 Total: -1.67 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.50 -7.18 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813439207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.665 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds