Wall clock time and date at job start Wed Apr 1 2020 02:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42910 * 113.99996 * 2 1 4 4 C 1.52991 * 109.47189 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47415 * 65.00246 * 4 3 2 6 6 C 1.46507 * 119.99793 * 269.99908 * 5 4 3 7 7 C 1.50697 * 109.47204 * 273.08008 * 6 5 4 8 8 H 1.07997 * 120.00217 * 4.59009 * 7 6 5 9 9 C 1.37876 * 120.00040 * 184.58971 * 7 6 5 10 10 N 1.31518 * 119.99779 * 5.08513 * 9 7 6 11 11 Si 1.86800 * 120.00167 * 185.08634 * 9 7 6 12 12 H 1.48497 * 109.46877 * 5.00254 * 11 9 7 13 13 H 1.48501 * 109.47005 * 125.00239 * 11 9 7 14 14 H 1.48503 * 109.47007 * 245.00260 * 11 9 7 15 15 C 1.34775 * 120.00241 * 89.99601 * 5 4 3 16 16 O 1.21282 * 119.99796 * 4.25093 * 15 5 4 17 17 C 1.50693 * 120.00030 * 184.24616 * 15 5 4 18 18 H 1.09004 * 109.47497 * 0.63513 * 17 15 5 19 19 O 1.42909 * 109.47210 * 120.63708 * 17 15 5 20 20 C 1.50700 * 109.47338 * 240.63692 * 17 15 5 21 21 C 1.38234 * 119.99720 * 268.18263 * 20 17 15 22 22 C 1.38200 * 120.03590 * 180.02562 * 21 20 17 23 23 C 1.38387 * 120.04026 * 359.97438 * 22 21 20 24 24 Cl 1.73597 * 120.00227 * 179.97438 * 23 22 21 25 25 C 1.38294 * 119.99849 * 359.97438 * 23 22 21 26 26 C 1.38438 * 120.00095 * 87.90798 * 20 17 15 27 27 F 1.35101 * 120.01815 * 0.02562 * 26 20 17 28 28 H 1.09001 * 109.47030 * 299.99527 * 1 2 3 29 29 H 1.08991 * 109.47598 * 59.99700 * 1 2 3 30 30 H 1.09001 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46366 * 60.00372 * 3 2 1 32 32 H 1.08999 * 109.46727 * 300.00839 * 3 2 1 33 33 H 1.09004 * 109.47011 * 305.00279 * 4 3 2 34 34 H 1.09005 * 109.47583 * 185.00077 * 4 3 2 35 35 H 1.09001 * 109.46831 * 33.08460 * 6 5 4 36 36 H 1.09008 * 109.46953 * 153.07857 * 6 5 4 37 37 H 0.97002 * 119.99656 * 179.97438 * 10 9 7 38 38 H 0.96700 * 113.99528 * 59.99310 * 19 17 15 39 39 H 1.07998 * 119.98246 * 0.02562 * 21 20 17 40 40 H 1.08000 * 119.98031 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.02010 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.1052 -0.8920 -1.3428 7 6 5.4764 -1.3043 -0.8729 8 1 6.1543 -0.5658 -0.4711 9 6 5.8656 -2.6244 -0.9560 10 7 5.0808 -3.5060 -1.5361 11 14 7.5074 -3.1607 -0.2445 12 1 8.1418 -2.0146 0.4549 13 1 7.2909 -4.2700 0.7186 14 1 8.3947 -3.6238 -1.3416 15 6 4.2614 1.3339 -2.3218 16 8 4.2288 2.5424 -2.2253 17 6 4.6216 0.6925 -3.6370 18 1 4.5877 -0.3921 -3.5337 19 8 3.6900 1.1049 -4.6391 20 6 6.0112 1.1155 -4.0384 21 6 6.1909 2.2292 -4.8373 22 6 7.4648 2.6176 -5.2064 23 6 8.5621 1.8924 -4.7761 24 17 10.1618 2.3807 -5.2408 25 6 8.3842 0.7786 -3.9759 26 6 7.1081 0.3922 -3.6024 27 9 6.9332 -0.6934 -2.8174 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6884 1.8464 -0.8899 33 1 3.8514 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 3.3490 -1.3635 -0.7152 36 1 3.9660 -1.2059 -2.3774 37 1 5.3548 -4.4347 -1.5948 38 1 3.6664 2.0606 -4.7846 39 1 5.3352 2.7961 -5.1733 40 1 7.6041 3.4876 -5.8309 41 1 9.2403 0.2121 -3.6402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813439207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:34 Heat of formation + Delta-G solvation = -160.157558 kcal Electronic energy + Delta-G solvation = -29458.946610 eV Core-core repulsion = 25086.447356 eV Total energy + Delta-G solvation = -4372.499255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.72428 -41.50764 -40.03836 -38.81095 -37.86465 -37.20137 -36.69484 -34.53596 -32.69017 -31.82525 -31.35379 -28.98227 -28.05867 -26.95401 -24.87414 -24.22762 -23.91465 -22.78306 -20.54042 -19.23834 -18.66807 -18.52872 -18.12651 -17.58153 -17.43619 -17.12411 -16.68234 -16.47392 -16.41758 -16.16173 -15.96464 -15.56207 -15.20721 -15.04225 -14.71063 -14.37246 -14.24709 -14.08861 -13.83709 -13.53037 -13.36470 -13.17465 -12.93331 -12.79023 -12.77376 -12.70332 -12.50364 -12.38878 -12.10495 -12.05660 -11.95517 -11.78268 -11.62293 -10.78851 -10.59136 -10.44750 -10.02023 -9.60871 -9.49839 -8.12915 -6.19387 -0.19208 0.05036 0.92206 1.38135 1.41022 1.46727 1.51663 2.09862 2.37619 2.47722 2.92823 3.17186 3.23632 3.34514 3.46813 3.59038 3.62579 3.89614 4.03762 4.13123 4.20819 4.36753 4.38153 4.44772 4.52639 4.55671 4.59493 4.79304 4.85076 4.87963 4.93928 5.00376 5.01437 5.14475 5.33445 5.63716 5.65419 5.84431 6.10941 6.27471 6.45316 6.50740 6.84950 7.12910 7.47029 8.94513 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.004833 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.686350 B = 5791.725057 C = 7812.450612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.057 3.943 4 C 0.112 3.888 5 N -0.580 5.580 6 C 0.252 3.748 7 C -0.514 4.514 8 H 0.049 0.951 9 C 0.035 3.965 10 N -0.919 5.919 11 Si 0.935 3.065 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.494 3.506 16 O -0.578 6.578 17 C 0.137 3.863 18 H 0.119 0.881 19 O -0.535 6.535 20 C -0.155 4.155 21 C -0.054 4.054 22 C -0.114 4.114 23 C -0.005 4.005 24 Cl -0.048 7.048 25 C -0.163 4.163 26 C 0.103 3.897 27 F -0.110 7.110 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.030 0.970 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.391 0.609 39 H 0.168 0.832 40 H 0.176 0.824 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 12.356 -5.140 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.021 4.021 4 C -0.011 4.011 5 N -0.309 5.309 6 C 0.132 3.868 7 C -0.553 4.553 8 H 0.067 0.933 9 C -0.165 4.165 10 N -0.560 5.560 11 Si 0.761 3.239 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.282 3.718 16 O -0.460 6.460 17 C 0.075 3.925 18 H 0.137 0.863 19 O -0.342 6.342 20 C -0.157 4.157 21 C -0.072 4.072 22 C -0.133 4.133 23 C -0.032 4.032 24 Cl -0.019 7.019 25 C -0.182 4.182 26 C 0.083 3.917 27 F -0.088 7.088 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.242 0.758 39 H 0.185 0.815 40 H 0.193 0.807 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.285 11.965 -5.150 13.030 hybrid contribution 0.862 -0.407 0.727 1.199 sum 1.147 11.559 -4.423 12.429 Atomic orbital electron populations 1.22870 0.79941 1.03354 1.00658 1.88008 1.21212 1.28258 1.95487 1.22925 0.93264 0.84842 1.01047 1.21574 0.93129 0.99596 0.86767 1.48194 1.62444 1.09194 1.11089 1.19224 0.96354 0.74039 0.97180 1.21425 0.99606 0.93247 1.41038 0.93257 1.25341 0.99395 0.96576 0.95182 1.70017 1.38668 1.03302 1.43964 0.85859 0.81272 0.78265 0.78489 1.19454 1.20682 1.20609 1.21187 0.76817 0.87017 0.86827 1.90566 1.55888 1.14295 1.85276 1.20605 0.85763 1.00981 0.85179 0.86321 1.86677 1.61114 1.30230 1.56193 1.20363 0.93851 0.98912 1.02596 1.21001 0.98752 0.93153 0.94309 1.21334 0.89611 1.01119 1.01219 1.20726 0.87670 0.95840 0.98928 1.98374 1.22029 1.90728 1.90752 1.21098 0.96275 0.99169 1.01699 1.17936 0.93895 0.86713 0.93190 1.91901 1.95834 1.50720 1.70297 0.92293 0.93942 0.89357 0.89740 0.94013 0.89879 0.88593 0.95236 0.95717 0.92696 0.75829 0.81515 0.80704 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.31 9.48 -148.98 -1.41 -15.72 16 3 C 0.06 1.76 6.28 71.98 0.45 2.21 16 4 C 0.11 4.06 5.86 86.38 0.51 4.57 16 5 N -0.58 -24.68 2.42 -826.14 -2.00 -26.67 16 6 C 0.25 12.45 4.84 85.63 0.41 12.86 16 7 C -0.51 -26.91 6.46 25.60 0.17 -26.75 16 8 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 9 C 0.04 1.88 4.96 84.65 0.42 2.30 16 10 N -0.92 -51.95 13.29 21.45 0.28 -51.67 16 11 Si 0.93 43.29 29.54 68.60 2.03 45.31 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 15 C 0.49 20.22 6.71 87.66 0.59 20.81 16 16 O -0.58 -23.65 16.43 2.91 0.05 -23.60 16 17 C 0.14 5.25 3.13 29.10 0.09 5.34 16 18 H 0.12 5.39 4.80 -2.38 -0.01 5.38 16 19 O -0.53 -17.52 13.03 -143.03 -1.86 -19.38 16 20 C -0.16 -5.34 4.95 -19.82 -0.10 -5.44 16 21 C -0.05 -1.39 9.31 22.26 0.21 -1.18 16 22 C -0.11 -2.53 9.83 22.30 0.22 -2.31 16 23 C 0.00 -0.12 6.32 22.32 0.14 0.02 16 24 Cl -0.05 -1.02 28.96 -2.72 -0.08 -1.10 16 25 C -0.16 -5.04 9.81 22.34 0.22 -4.82 16 26 C 0.10 3.84 7.24 22.37 0.16 4.00 16 27 F -0.11 -4.99 12.75 44.97 0.57 -4.41 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 3.09 8.07 -2.38 -0.02 3.07 16 34 H 0.10 3.28 7.37 -2.38 -0.02 3.26 16 35 H 0.03 1.57 7.07 -2.39 -0.02 1.56 16 36 H 0.03 1.32 5.56 -2.38 -0.01 1.31 16 37 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.39 9.53 7.22 -74.06 -0.53 9.00 16 39 H 0.17 3.21 6.45 -2.91 -0.02 3.19 16 40 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -65.07 363.34 2.87 -62.20 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.55 Total: 21.49 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 4.74 Total: 13.55 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -1.71 Total: -78.34 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -3.23 Total: -58.70 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.57 Total: -4.41 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -65.07 2.87 -62.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813439207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.955 kcal (2) G-P(sol) polarization free energy of solvation -65.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds