Wall clock time and date at job start Wed Apr 1 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.09008 * 109.47488 * 300.00148 * 5 3 2 7 7 N 1.46896 * 109.47313 * 180.02562 * 5 3 2 8 8 C 1.46905 * 111.00191 * 84.99729 * 7 5 3 9 9 C 1.53004 * 109.46990 * 180.02562 * 8 7 5 10 10 O 1.42902 * 109.47002 * 65.00421 * 9 8 7 11 11 C 1.42894 * 113.99977 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47294 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99913 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00173 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00365 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 120.00007 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.46927 * 90.00221 * 16 14 12 18 18 H 1.48495 * 109.47053 * 210.00369 * 16 14 12 19 19 H 1.48502 * 109.46976 * 330.00185 * 16 14 12 20 20 C 1.50700 * 109.47555 * 60.00122 * 5 3 2 21 21 C 1.38263 * 119.97604 * 260.00386 * 20 5 3 22 22 C 1.38216 * 120.06217 * 179.97438 * 21 20 5 23 23 C 1.38325 * 120.01209 * 0.02562 * 22 21 20 24 24 Cl 1.73591 * 120.02442 * 179.97438 * 23 22 21 25 25 C 1.38553 * 119.94858 * 359.97192 * 23 22 21 26 26 F 1.35096 * 120.02648 * 179.97438 * 25 23 22 27 27 C 1.38196 * 119.97245 * 79.72127 * 20 5 3 28 28 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 29 29 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 30 30 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.00899 * 111.00331 * 208.95061 * 7 5 3 32 32 H 1.08997 * 109.47108 * 300.00180 * 8 7 5 33 33 H 1.08999 * 109.46867 * 60.00438 * 8 7 5 34 34 H 1.08999 * 109.46984 * 184.99858 * 9 8 7 35 35 H 1.08996 * 109.47362 * 305.00194 * 9 8 7 36 36 H 1.09002 * 109.47123 * 300.00066 * 11 10 9 37 37 H 1.09005 * 109.47361 * 59.99954 * 11 10 9 38 38 H 0.96996 * 120.00269 * 179.97438 * 15 14 12 39 39 H 1.08003 * 119.96721 * 359.97438 * 21 20 5 40 40 H 1.07999 * 119.99098 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00678 * 0.02861 * 27 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9565 0.7806 0.8892 7 7 3.9828 2.6836 0.0002 8 6 4.0180 3.2215 1.3667 9 6 4.4545 4.6874 1.3267 10 8 3.4666 5.4600 0.6417 11 6 3.7785 6.8514 0.5486 12 6 2.6752 7.5653 -0.1890 13 1 1.8214 7.0118 -0.5509 14 6 2.7563 8.9250 -0.4028 15 7 1.7937 9.5480 -1.0469 16 14 4.2335 9.8823 0.2225 17 1 5.2870 9.9060 -0.8238 18 1 3.8227 11.2729 0.5429 19 1 4.7651 9.2290 1.4456 20 6 4.1047 0.5921 -1.2314 21 6 4.5992 -0.6963 -1.1461 22 6 5.0930 -1.3245 -2.2739 23 6 5.0934 -0.6642 -3.4894 24 17 5.7141 -1.4526 -4.9060 25 6 4.5979 0.6269 -3.5754 26 9 4.5980 1.2734 -4.7616 27 6 4.0985 1.2520 -2.4456 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.8756 2.7969 -0.4561 32 1 3.0252 3.1504 1.8108 33 1 4.7256 2.6475 1.9650 34 1 4.5664 5.0611 2.3445 35 1 5.4069 4.7688 0.8029 36 1 3.8763 7.2696 1.5504 37 1 4.7171 6.9780 0.0088 38 1 1.8506 10.5046 -1.1970 39 1 4.5996 -1.2123 -0.1973 40 1 5.4793 -2.3307 -2.2059 41 1 3.7083 2.2568 -2.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839143685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:04 Heat of formation + Delta-G solvation = -140.649718 kcal Electronic energy + Delta-G solvation = -27561.651331 eV Core-core repulsion = 23189.998000 eV Total energy + Delta-G solvation = -4371.653331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.17570 -40.81502 -39.48525 -37.55255 -36.94328 -36.48540 -35.46123 -32.71203 -32.01667 -31.13083 -29.19720 -28.29247 -27.29733 -25.61113 -23.40548 -22.89527 -21.82690 -21.63625 -20.66787 -18.35288 -17.63685 -16.99230 -16.79797 -16.76923 -16.69239 -16.27531 -15.98029 -15.78083 -15.42666 -15.17440 -14.41196 -14.24628 -14.19507 -13.96365 -13.78057 -13.34420 -13.24990 -13.09553 -12.82262 -12.69852 -12.37785 -12.26384 -12.10899 -11.86924 -11.80921 -11.40663 -11.28391 -10.92815 -10.80450 -10.71958 -10.57203 -10.42920 -9.81281 -9.37844 -9.09770 -9.02717 -8.78280 -8.58488 -8.39091 -6.04205 -4.02388 0.43064 0.69409 1.61415 2.21053 2.48431 2.98616 3.28249 3.34803 3.36047 3.66266 3.88784 4.08821 4.30788 4.40724 4.60314 4.64636 4.66902 4.75135 4.87925 5.02485 5.11348 5.15883 5.26467 5.27893 5.40011 5.43634 5.49241 5.53871 5.59292 5.75285 5.86344 5.90871 6.11650 6.26404 6.32553 6.64277 6.70803 7.05764 7.18175 7.67196 7.82249 8.11416 8.75606 9.10982 9.55317 11.09108 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.002798 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.969977 B =10005.059131 C =11326.264478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.453 3.547 4 O -0.453 6.453 5 C 0.145 3.855 6 H 0.094 0.906 7 N -0.654 5.654 8 C 0.065 3.935 9 C 0.062 3.938 10 O -0.360 6.360 11 C 0.167 3.833 12 C -0.513 4.513 13 H 0.084 0.916 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.876 3.124 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.063 4.063 21 C -0.095 4.095 22 C -0.085 4.085 23 C -0.069 4.069 24 Cl -0.050 7.050 25 C 0.112 3.888 26 F -0.122 7.122 27 C -0.115 4.115 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.357 0.643 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.037 0.963 36 H 0.000 1.000 37 H -0.004 1.004 38 H 0.265 0.735 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.995 -28.182 1.322 29.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.291 3.709 4 O -0.335 6.335 5 C 0.034 3.966 6 H 0.111 0.889 7 N -0.289 5.289 8 C -0.064 4.064 9 C -0.016 4.016 10 O -0.278 6.278 11 C 0.092 3.908 12 C -0.551 4.551 13 H 0.102 0.898 14 C -0.131 4.131 15 N -0.536 5.536 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.064 4.064 21 C -0.114 4.114 22 C -0.104 4.104 23 C -0.097 4.097 24 Cl -0.021 7.021 25 C 0.092 3.908 26 F -0.100 7.100 27 C -0.135 4.135 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.179 0.821 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.014 0.986 38 H 0.075 0.925 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.941 -27.530 0.874 28.405 hybrid contribution 1.584 0.499 0.326 1.692 sum 8.524 -27.031 1.201 28.369 Atomic orbital electron populations 1.23239 0.76275 1.03353 1.02848 1.86451 1.23378 1.33613 1.84823 1.23441 0.91310 0.81758 0.74414 1.90821 1.65750 1.35743 1.41160 1.19787 0.88971 0.91315 0.96553 0.88908 1.59832 1.36641 1.12435 1.20004 1.22124 1.02048 0.94440 0.87769 1.22260 0.92468 0.90664 0.96234 1.88092 1.43005 1.20363 1.76358 1.20591 0.96573 0.78449 0.95189 1.20911 1.06213 0.92686 1.35318 0.89832 1.24777 0.96226 0.97149 0.94923 1.69883 1.32643 1.09691 1.41339 0.86859 0.83408 0.79688 0.79804 1.20008 1.20883 1.19201 1.19414 0.98965 0.94521 0.93490 1.21044 0.97617 0.93631 0.99078 1.20911 0.99234 1.00508 0.89722 1.21111 1.04724 0.93226 0.90639 1.98396 1.85519 1.79599 1.38629 1.17370 1.01265 0.89785 0.82388 1.91580 1.94138 1.80784 1.43513 1.21266 0.99568 1.02479 0.90145 0.91803 0.91850 0.88301 0.82138 0.89687 0.93993 0.93709 0.94468 0.98273 0.98618 0.92472 0.83883 0.83621 0.82034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.37 -4.08 10.48 -39.26 -0.41 -4.49 16 3 C 0.45 6.08 7.11 36.00 0.26 6.33 16 4 O -0.45 -8.24 15.67 -18.75 -0.29 -8.54 16 5 C 0.15 1.52 2.72 -70.02 -0.19 1.33 16 6 H 0.09 0.70 7.66 -51.92 -0.40 0.30 16 7 N -0.65 -8.59 5.18 -109.18 -0.57 -9.16 16 8 C 0.06 0.86 5.76 -3.82 -0.02 0.84 16 9 C 0.06 1.04 6.22 37.16 0.23 1.27 16 10 O -0.36 -8.56 10.27 -35.23 -0.36 -8.92 16 11 C 0.17 4.35 4.76 36.01 0.17 4.52 16 12 C -0.51 -15.77 9.99 -34.44 -0.34 -16.12 16 13 H 0.08 2.85 8.06 -52.49 -0.42 2.43 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 16 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 20 C -0.06 -0.59 4.63 -104.63 -0.48 -1.07 16 21 C -0.09 -0.65 9.67 -39.58 -0.38 -1.04 16 22 C -0.09 -0.60 9.83 -39.56 -0.39 -0.99 16 23 C -0.07 -0.65 6.33 -39.43 -0.25 -0.90 16 24 Cl -0.05 -0.47 28.62 -51.86 -1.48 -1.95 16 25 C 0.11 1.26 7.28 -39.39 -0.29 0.97 16 26 F -0.12 -1.58 16.84 2.25 0.04 -1.54 16 27 C -0.12 -1.29 8.99 -39.52 -0.36 -1.65 16 28 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.36 4.09 8.00 -39.29 -0.31 3.78 16 32 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 33 H 0.04 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 37 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 38 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.14 0.60 8.04 -52.48 -0.42 0.18 16 40 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.16 2.11 7.72 -52.49 -0.41 1.70 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -36.56 375.54 -7.64 -44.19 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.25 Total: -1.71 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.08 Total: -3.06 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.21 Total: -36.81 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -1.07 Total: -21.94 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.48 Total: -1.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.56 -7.64 -44.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839143685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.457 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds