Wall clock time and date at job start Wed Apr 1 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.09008 * 109.47488 * 300.00148 * 5 3 2 7 7 N 1.46896 * 109.47313 * 180.02562 * 5 3 2 8 8 C 1.46905 * 111.00191 * 84.99729 * 7 5 3 9 9 C 1.53004 * 109.46990 * 180.02562 * 8 7 5 10 10 O 1.42902 * 109.47002 * 65.00421 * 9 8 7 11 11 C 1.42894 * 113.99977 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47294 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99913 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00173 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00365 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 120.00007 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.46927 * 90.00221 * 16 14 12 18 18 H 1.48495 * 109.47053 * 210.00369 * 16 14 12 19 19 H 1.48502 * 109.46976 * 330.00185 * 16 14 12 20 20 C 1.50700 * 109.47555 * 60.00122 * 5 3 2 21 21 C 1.38263 * 119.97604 * 260.00386 * 20 5 3 22 22 C 1.38216 * 120.06217 * 179.97438 * 21 20 5 23 23 C 1.38325 * 120.01209 * 0.02562 * 22 21 20 24 24 Cl 1.73591 * 120.02442 * 179.97438 * 23 22 21 25 25 C 1.38553 * 119.94858 * 359.97192 * 23 22 21 26 26 F 1.35096 * 120.02648 * 179.97438 * 25 23 22 27 27 C 1.38196 * 119.97245 * 79.72127 * 20 5 3 28 28 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 29 29 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 30 30 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.00899 * 111.00331 * 208.95061 * 7 5 3 32 32 H 1.08997 * 109.47108 * 300.00180 * 8 7 5 33 33 H 1.08999 * 109.46867 * 60.00438 * 8 7 5 34 34 H 1.08999 * 109.46984 * 184.99858 * 9 8 7 35 35 H 1.08996 * 109.47362 * 305.00194 * 9 8 7 36 36 H 1.09002 * 109.47123 * 300.00066 * 11 10 9 37 37 H 1.09005 * 109.47361 * 59.99954 * 11 10 9 38 38 H 0.96996 * 120.00269 * 179.97438 * 15 14 12 39 39 H 1.08003 * 119.96721 * 359.97438 * 21 20 5 40 40 H 1.07999 * 119.99098 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00678 * 0.02861 * 27 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9565 0.7806 0.8892 7 7 3.9828 2.6836 0.0002 8 6 4.0180 3.2215 1.3667 9 6 4.4545 4.6874 1.3267 10 8 3.4666 5.4600 0.6417 11 6 3.7785 6.8514 0.5486 12 6 2.6752 7.5653 -0.1890 13 1 1.8214 7.0118 -0.5509 14 6 2.7563 8.9250 -0.4028 15 7 1.7937 9.5480 -1.0469 16 14 4.2335 9.8823 0.2225 17 1 5.2870 9.9060 -0.8238 18 1 3.8227 11.2729 0.5429 19 1 4.7651 9.2290 1.4456 20 6 4.1047 0.5921 -1.2314 21 6 4.5992 -0.6963 -1.1461 22 6 5.0930 -1.3245 -2.2739 23 6 5.0934 -0.6642 -3.4894 24 17 5.7141 -1.4526 -4.9060 25 6 4.5979 0.6269 -3.5754 26 9 4.5980 1.2734 -4.7616 27 6 4.0985 1.2520 -2.4456 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.8756 2.7969 -0.4561 32 1 3.0252 3.1504 1.8108 33 1 4.7256 2.6475 1.9650 34 1 4.5664 5.0611 2.3445 35 1 5.4069 4.7688 0.8029 36 1 3.8763 7.2696 1.5504 37 1 4.7171 6.9780 0.0088 38 1 1.8506 10.5046 -1.1970 39 1 4.5996 -1.2123 -0.1973 40 1 5.4793 -2.3307 -2.2059 41 1 3.7083 2.2568 -2.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839143685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:03 Heat of formation + Delta-G solvation = -166.731869 kcal Electronic energy + Delta-G solvation = -27562.782338 eV Core-core repulsion = 23189.998000 eV Total energy + Delta-G solvation = -4372.784338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.07855 -41.76578 -40.28027 -38.87474 -37.89820 -37.53437 -36.58983 -34.86290 -33.09584 -31.84218 -30.59893 -29.48375 -28.70529 -26.58050 -24.16149 -23.95115 -23.73865 -22.77569 -21.59064 -19.28224 -19.00344 -18.50979 -17.77571 -17.73914 -17.50815 -17.41284 -17.16551 -16.87354 -16.73288 -16.54000 -16.01363 -15.34722 -15.08003 -14.96918 -14.74202 -14.57100 -14.38924 -14.18226 -14.03449 -14.01884 -13.67413 -13.20883 -13.04801 -13.04002 -12.79833 -12.64822 -12.61674 -12.33202 -12.05978 -11.96257 -11.81179 -11.75828 -11.55517 -11.30396 -10.92067 -10.27606 -10.09313 -9.76723 -9.47560 -8.36744 -6.44748 -0.28729 -0.00766 0.90307 1.20231 1.31630 1.36416 1.47199 1.62140 2.28237 2.29623 2.90421 2.95437 3.02799 3.16740 3.33357 3.61912 3.83921 3.94463 4.02047 4.16467 4.24039 4.30593 4.32091 4.33147 4.48694 4.54494 4.55229 4.65999 4.70533 4.71431 4.88577 4.94929 4.95415 5.04740 5.20681 5.36538 5.45782 5.56829 5.79193 5.98090 6.31388 6.60478 6.82432 6.85492 7.20370 8.81324 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.002798 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.969977 B =10005.059131 C =11326.264478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.453 3.547 4 O -0.516 6.516 5 C 0.152 3.848 6 H 0.140 0.860 7 N -0.686 5.686 8 C 0.073 3.927 9 C 0.049 3.951 10 O -0.396 6.396 11 C 0.180 3.820 12 C -0.544 4.544 13 H 0.020 0.980 14 C 0.008 3.992 15 N -0.947 5.947 16 Si 0.963 3.037 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.242 1.242 20 C -0.064 4.064 21 C -0.072 4.072 22 C -0.072 4.072 23 C -0.072 4.072 24 Cl -0.051 7.051 25 C 0.085 3.915 26 F -0.142 7.142 27 C -0.131 4.131 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.139 0.861 31 H 0.364 0.636 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.272 0.728 39 H 0.187 0.813 40 H 0.181 0.819 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.334 -30.732 3.735 32.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.294 3.706 4 O -0.402 6.402 5 C 0.041 3.959 6 H 0.157 0.843 7 N -0.323 5.323 8 C -0.055 4.055 9 C -0.028 4.028 10 O -0.315 6.315 11 C 0.104 3.896 12 C -0.582 4.582 13 H 0.038 0.962 14 C -0.190 4.190 15 N -0.586 5.586 16 Si 0.783 3.217 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.165 1.165 20 C -0.065 4.065 21 C -0.090 4.090 22 C -0.090 4.090 23 C -0.100 4.100 24 Cl -0.022 7.022 25 C 0.065 3.935 26 F -0.121 7.121 27 C -0.150 4.150 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.157 0.843 31 H 0.188 0.812 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.081 0.919 39 H 0.204 0.796 40 H 0.198 0.802 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.291 -30.140 3.289 32.018 hybrid contribution 0.415 1.136 -0.466 1.296 sum 10.705 -29.004 2.823 31.045 Atomic orbital electron populations 1.23481 0.75385 1.05634 1.01847 1.86450 1.24282 1.32319 1.84067 1.24239 0.92660 0.81364 0.72354 1.90809 1.67306 1.37791 1.44292 1.19902 0.86759 0.90405 0.98818 0.84322 1.59613 1.37535 1.14767 1.20375 1.22062 1.01954 0.92906 0.88580 1.22718 0.91834 0.91764 0.96525 1.88048 1.46101 1.19565 1.77808 1.20265 0.94751 0.79710 0.94858 1.21199 1.06317 0.93706 1.36978 0.96163 1.25954 1.00357 0.98099 0.94555 1.70063 1.35485 1.10541 1.42560 0.85512 0.78213 0.77709 0.80246 1.18349 1.19839 1.16517 1.19378 0.99577 0.95573 0.91971 1.21461 0.94880 0.91980 1.00689 1.21350 0.97705 1.01578 0.88371 1.21295 1.04525 0.92534 0.91653 1.98396 1.85463 1.79306 1.39079 1.17586 1.03187 0.90928 0.81782 1.91518 1.94535 1.81404 1.44616 1.21063 1.00826 1.01608 0.91513 0.93427 0.92403 0.84262 0.81228 0.92245 0.88602 0.92088 0.92575 0.97112 0.97208 0.91857 0.79620 0.80153 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -7.43 10.48 -51.42 -0.54 -7.97 16 3 C 0.45 12.11 7.11 71.24 0.51 12.62 16 4 O -0.52 -19.96 15.67 21.98 0.34 -19.61 16 5 C 0.15 2.90 2.72 43.42 0.12 3.02 16 6 H 0.14 1.39 7.66 -2.38 -0.02 1.37 16 7 N -0.69 -17.63 5.18 -499.34 -2.59 -20.22 16 8 C 0.07 1.82 5.76 86.30 0.50 2.32 16 9 C 0.05 1.57 6.22 71.98 0.45 2.01 16 10 O -0.40 -19.33 10.27 -148.98 -1.53 -20.86 16 11 C 0.18 9.41 4.76 71.24 0.34 9.75 16 12 C -0.54 -35.16 9.99 25.60 0.26 -34.90 16 13 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 14 C 0.01 0.46 5.47 84.65 0.46 0.93 16 15 N -0.95 -62.37 13.96 21.45 0.30 -62.07 16 16 Si 0.96 44.81 27.47 68.60 1.88 46.70 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 20 C -0.06 -1.07 4.63 -19.87 -0.09 -1.17 16 21 C -0.07 -0.66 9.67 22.27 0.22 -0.45 16 22 C -0.07 -0.73 9.83 22.29 0.22 -0.51 16 23 C -0.07 -1.25 6.33 22.37 0.14 -1.11 16 24 Cl -0.05 -0.89 28.62 -2.72 -0.08 -0.97 16 25 C 0.09 1.96 7.28 22.39 0.16 2.13 16 26 F -0.14 -3.96 16.84 44.97 0.76 -3.20 16 27 C -0.13 -3.03 8.99 22.31 0.20 -2.83 16 28 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 29 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.14 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.36 8.09 8.00 -89.69 -0.72 7.38 16 32 H 0.06 1.80 7.62 -2.39 -0.02 1.78 16 33 H 0.10 1.37 8.05 -2.39 -0.02 1.35 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.01 0.55 7.20 -2.39 -0.02 0.54 16 37 H 0.01 0.50 7.57 -2.38 -0.02 0.48 16 38 H 0.27 16.38 8.31 -92.71 -0.77 15.61 16 39 H 0.19 0.22 8.04 -2.91 -0.02 0.20 16 40 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 41 H 0.13 3.80 7.72 -2.91 -0.02 3.77 16 Total: -1.00 -88.67 375.54 3.52 -85.15 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.30 Total: 9.51 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 4.67 Total: -6.46 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.29 Total: -82.29 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -1.73 Total: -48.44 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.76 Total: -3.20 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -88.67 3.52 -85.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839143685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.582 kcal (2) G-P(sol) polarization free energy of solvation -88.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds