Wall clock time and date at job start Wed Apr 1 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28089 * 119.15896 * 2 1 4 4 C 1.31204 * 122.96858 * 179.09561 * 3 2 1 5 5 C 1.39823 * 119.66122 * 359.52210 * 4 3 2 6 6 C 1.36832 * 118.75671 * 1.12184 * 5 4 3 7 7 C 1.34688 * 119.15779 * 179.72545 * 2 1 3 8 8 O 1.22061 * 120.52346 * 1.28889 * 7 2 1 9 9 C 1.50508 * 122.52540 * 181.56657 * 5 4 3 10 10 N 1.46796 * 109.45625 * 348.18995 * 9 5 4 11 11 C 1.34767 * 121.26914 * 224.55223 * 10 9 5 12 12 O 1.21763 * 120.00134 * 174.55069 * 11 10 9 13 13 C 1.46238 * 120.00258 * 354.55100 * 11 10 9 14 14 S 1.75665 * 125.22784 * 326.33302 * 13 11 10 15 15 C 1.75466 * 92.09296 * 179.91768 * 14 13 11 16 16 C 1.32770 * 111.36407 * 0.35860 * 15 14 13 17 17 C 1.39544 * 125.22640 * 146.64132 * 13 11 10 18 18 C 1.40531 * 123.71940 * 359.96152 * 17 13 11 19 19 H 1.07998 * 119.99880 * 13.49190 * 18 17 13 20 20 C 1.40314 * 120.00254 * 193.49307 * 18 17 13 21 21 N 1.30632 * 119.99772 * 18.81243 * 20 18 17 22 22 Si 1.86798 * 119.99989 * 198.81261 * 20 18 17 23 23 H 1.48503 * 109.46876 * 89.99935 * 22 20 18 24 24 H 1.48500 * 109.47243 * 209.99517 * 22 20 18 25 25 H 1.48503 * 109.47347 * 330.00099 * 22 20 18 26 26 C 1.47178 * 117.45716 * 44.53521 * 10 9 5 27 27 C 1.50621 * 117.99863 * 179.18501 * 4 3 2 28 28 H 1.08996 * 109.47039 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46975 * 120.00241 * 1 2 3 30 30 H 1.09002 * 109.47156 * 240.00145 * 1 2 3 31 31 H 1.08001 * 121.02431 * 179.28517 * 6 5 4 32 32 H 1.09004 * 109.47196 * 228.20430 * 9 5 4 33 33 H 1.08998 * 109.47655 * 108.19055 * 9 5 4 34 34 H 1.07997 * 124.31914 * 180.02562 * 15 14 13 35 35 H 1.07999 * 122.78338 * 179.73728 * 16 15 14 36 36 H 0.97003 * 120.00090 * 180.02562 * 21 20 18 37 37 H 1.09003 * 109.71099 * 175.65452 * 26 10 9 38 38 H 1.08997 * 109.71944 * 55.01562 * 26 10 9 39 39 H 1.08999 * 109.22705 * 280.15351 * 27 4 3 40 40 H 1.09008 * 109.22487 * 39.50359 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.0890 1.1186 0.0000 4 6 3.3981 1.2058 0.0174 5 6 4.1689 0.0396 0.0471 6 6 3.5317 -1.1712 0.0339 7 6 2.1212 -1.1762 0.0056 8 8 1.5052 -2.2298 -0.0130 9 6 5.6728 0.0649 0.1030 10 7 6.1492 1.4274 -0.1641 11 6 7.1841 1.6560 -0.9965 12 8 7.4972 2.7983 -1.2793 13 6 7.9312 0.5323 -1.5602 14 16 8.2381 -0.9921 -0.7431 15 6 9.1275 -1.6236 -2.1176 16 6 9.1859 -0.7373 -3.1044 17 6 8.5150 0.5086 -2.8274 18 6 8.4549 1.5806 -3.7342 19 1 8.1331 2.5551 -3.3977 20 6 8.8131 1.3849 -5.0766 21 7 8.8450 0.1777 -5.5748 22 14 9.2441 2.8506 -6.1515 23 1 10.7017 3.1195 -6.0605 24 1 8.8825 2.5542 -7.5610 25 1 8.4908 4.0433 -5.6875 26 6 5.4533 2.5343 0.5117 27 6 4.0155 2.5795 -0.0036 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8900 31 1 4.0914 -2.0949 0.0443 32 1 6.0757 -0.6146 -0.6481 33 1 6.0050 -0.2489 1.0925 34 1 9.5752 -2.6057 -2.1541 35 1 9.6936 -0.9333 -4.0372 36 1 9.0930 0.0423 -6.5027 37 1 5.9544 3.4757 0.2864 38 1 5.4530 2.3657 1.5885 39 1 4.0121 2.9590 -1.0254 40 1 3.4287 3.2464 0.6281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866246956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:43 Heat of formation + Delta-G solvation = 26.220198 kcal Electronic energy + Delta-G solvation = -27611.655018 eV Core-core repulsion = 23712.343391 eV Total energy + Delta-G solvation = -3899.311626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06857 -39.22332 -37.76169 -36.70229 -35.88342 -33.78307 -33.21220 -32.99335 -30.34899 -29.02258 -28.53341 -26.56539 -25.59005 -24.61747 -23.08739 -22.33087 -21.33993 -19.66007 -18.84635 -18.36752 -17.31135 -16.87608 -16.74521 -16.17431 -15.84007 -15.43473 -15.17094 -14.87939 -14.46689 -14.14155 -13.90846 -13.61498 -13.41032 -13.22696 -13.05524 -12.76502 -12.60689 -12.57174 -12.36944 -12.06583 -11.94747 -11.85131 -11.51504 -11.25018 -11.20858 -10.98942 -10.86178 -10.48928 -10.21386 -9.87535 -9.76823 -9.72995 -9.26639 -8.67764 -8.38259 -8.12253 -7.63395 -7.21908 -7.17570 -4.63024 0.52065 1.60073 2.10943 2.23806 2.87979 2.93378 2.98948 3.04717 3.37020 3.42549 3.53059 3.71423 3.76844 4.05487 4.23262 4.52540 4.58426 4.78767 5.02008 5.04987 5.13607 5.25826 5.32385 5.35210 5.56261 5.59123 5.61297 5.76360 5.84234 5.90365 5.97955 6.01059 6.15191 6.24596 6.41717 6.69028 7.02158 7.11922 7.15715 7.39701 7.59956 7.64035 8.13087 8.16310 8.25077 8.47808 8.62194 9.32741 9.69427 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.003573 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.637231 B = 7834.892878 C = 8249.458601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.347 5.347 3 N -0.235 5.235 4 C 0.086 3.914 5 C -0.027 4.027 6 C -0.199 4.199 7 C 0.478 3.522 8 O -0.543 6.543 9 C 0.137 3.863 10 N -0.630 5.630 11 C 0.620 3.380 12 O -0.557 6.557 13 C -0.452 4.452 14 S -0.037 6.037 15 C -0.213 4.213 16 C -0.102 4.102 17 C 0.141 3.859 18 C -0.384 4.384 19 H 0.110 0.890 20 C 0.071 3.929 21 N -0.766 5.766 22 Si 0.923 3.077 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.253 1.253 26 C 0.118 3.882 27 C -0.067 4.067 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.166 0.834 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.290 0.710 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 0.921 7.201 11.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.166 5.166 3 N -0.059 5.059 4 C -0.084 4.084 5 C -0.033 4.033 6 C -0.230 4.230 7 C 0.278 3.722 8 O -0.423 6.423 9 C 0.012 3.988 10 N -0.365 5.365 11 C 0.418 3.582 12 O -0.439 6.439 13 C -0.570 4.570 14 S 0.219 5.781 15 C -0.346 4.346 16 C -0.134 4.134 17 C 0.130 3.870 18 C -0.414 4.414 19 H 0.127 0.873 20 C -0.153 4.153 21 N -0.390 5.390 22 Si 0.746 3.254 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.177 1.177 26 C -0.006 4.006 27 C -0.107 4.107 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.184 0.816 32 H 0.151 0.849 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.620 0.669 8.164 12.635 hybrid contribution 1.029 0.080 -1.915 2.175 sum -8.592 0.749 6.248 10.650 Atomic orbital electron populations 1.22063 0.74430 1.04697 1.04137 1.46518 1.09356 1.02858 1.57906 1.70896 1.11865 1.11982 1.11185 1.21543 0.87133 0.97048 1.02721 1.21154 0.98732 0.92614 0.90841 1.22588 0.92834 0.99799 1.07761 1.17961 0.89747 0.83983 0.80497 1.90957 1.69600 1.29115 1.52642 1.20902 0.86936 0.86968 1.03983 1.47917 1.34443 1.05290 1.48869 1.16854 0.77667 0.88000 0.75658 1.90653 1.69360 1.23352 1.60518 1.22274 1.30827 0.99358 1.04589 1.82813 1.60871 1.12633 1.21812 1.25090 1.08151 1.02938 0.98418 1.21849 0.99645 0.93225 0.98685 1.17844 0.87358 0.91401 0.90354 1.19997 1.31669 0.98310 0.91460 0.87260 1.26415 0.91801 0.97675 0.99406 1.69688 1.30045 1.23250 1.15978 0.86033 0.80318 0.81285 0.77809 1.18635 1.19924 1.17675 1.21400 0.90223 0.93114 0.95870 1.20599 0.96003 0.89920 1.04158 0.88439 0.89826 0.89888 0.81636 0.84922 0.89724 0.84518 0.83398 0.89851 0.87753 0.91614 0.88969 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.23 59.84 0.61 1.46 16 2 N -0.35 -4.75 3.61 -70.18 -0.25 -5.01 16 3 N -0.24 -3.21 10.69 33.70 0.36 -2.85 16 4 C 0.09 1.20 6.73 -82.31 -0.55 0.65 16 5 C -0.03 -0.39 5.81 -104.63 -0.61 -1.00 16 6 C -0.20 -2.94 9.75 -39.01 -0.38 -3.32 16 7 C 0.48 7.55 7.48 -15.22 -0.11 7.43 16 8 O -0.54 -9.82 17.11 4.86 0.08 -9.73 16 9 C 0.14 2.16 5.04 -5.13 -0.03 2.13 16 10 N -0.63 -11.23 2.94 -176.21 -0.52 -11.75 16 11 C 0.62 14.06 7.42 -13.05 -0.10 13.97 16 12 O -0.56 -14.05 14.60 5.13 0.07 -13.98 16 13 C -0.45 -10.69 5.67 -35.88 -0.20 -10.90 16 14 S -0.04 -0.73 19.74 -107.50 -2.12 -2.85 16 15 C -0.21 -4.38 11.07 28.86 0.32 -4.06 16 16 C -0.10 -2.37 9.12 -39.12 -0.36 -2.73 16 17 C 0.14 3.57 5.75 -106.21 -0.61 2.96 16 18 C -0.38 -9.83 8.80 -37.94 -0.33 -10.17 16 19 H 0.11 2.94 6.16 -52.49 -0.32 2.62 16 20 C 0.07 1.63 5.32 -17.28 -0.09 1.54 16 21 N -0.77 -17.54 10.71 55.57 0.60 -16.94 16 22 Si 0.92 17.57 29.60 -169.99 -5.03 12.54 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.25 -4.95 7.11 56.52 0.40 -4.55 16 26 C 0.12 1.65 6.39 -3.78 -0.02 1.63 16 27 C -0.07 -0.84 6.12 -28.03 -0.17 -1.01 16 28 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16 32 H 0.13 2.35 4.82 -36.22 -0.17 2.18 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 35 H 0.15 3.44 6.08 -52.49 -0.32 3.12 16 36 H 0.29 5.92 8.29 -40.82 -0.34 5.58 16 37 H 0.10 1.56 7.09 -51.93 -0.37 1.19 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -30.27 346.47 -8.35 -38.62 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.12 Total: 8.15 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.64 Total: -1.42 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.18 Total: -36.55 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.16 Total: -23.71 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.12 Total: -2.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.27 -8.35 -38.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866246956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.844 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds