Wall clock time and date at job start Wed Apr 1 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28089 * 119.15896 * 2 1 4 4 C 1.31204 * 122.96858 * 179.09561 * 3 2 1 5 5 C 1.39823 * 119.66122 * 359.52210 * 4 3 2 6 6 C 1.36832 * 118.75671 * 1.12184 * 5 4 3 7 7 C 1.34688 * 119.15779 * 179.72545 * 2 1 3 8 8 O 1.22061 * 120.52346 * 1.28889 * 7 2 1 9 9 C 1.50508 * 122.52540 * 181.56657 * 5 4 3 10 10 N 1.46796 * 109.45625 * 348.18995 * 9 5 4 11 11 C 1.34767 * 121.26914 * 224.55223 * 10 9 5 12 12 O 1.21763 * 120.00134 * 174.55069 * 11 10 9 13 13 C 1.46238 * 120.00258 * 354.55100 * 11 10 9 14 14 S 1.75665 * 125.22784 * 326.33302 * 13 11 10 15 15 C 1.75466 * 92.09296 * 179.91768 * 14 13 11 16 16 C 1.32770 * 111.36407 * 0.35860 * 15 14 13 17 17 C 1.39544 * 125.22640 * 146.64132 * 13 11 10 18 18 C 1.40531 * 123.71940 * 359.96152 * 17 13 11 19 19 H 1.07998 * 119.99880 * 13.49190 * 18 17 13 20 20 C 1.40314 * 120.00254 * 193.49307 * 18 17 13 21 21 N 1.30632 * 119.99772 * 18.81243 * 20 18 17 22 22 Si 1.86798 * 119.99989 * 198.81261 * 20 18 17 23 23 H 1.48503 * 109.46876 * 89.99935 * 22 20 18 24 24 H 1.48500 * 109.47243 * 209.99517 * 22 20 18 25 25 H 1.48503 * 109.47347 * 330.00099 * 22 20 18 26 26 C 1.47178 * 117.45716 * 44.53521 * 10 9 5 27 27 C 1.50621 * 117.99863 * 179.18501 * 4 3 2 28 28 H 1.08996 * 109.47039 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46975 * 120.00241 * 1 2 3 30 30 H 1.09002 * 109.47156 * 240.00145 * 1 2 3 31 31 H 1.08001 * 121.02431 * 179.28517 * 6 5 4 32 32 H 1.09004 * 109.47196 * 228.20430 * 9 5 4 33 33 H 1.08998 * 109.47655 * 108.19055 * 9 5 4 34 34 H 1.07997 * 124.31914 * 180.02562 * 15 14 13 35 35 H 1.07999 * 122.78338 * 179.73728 * 16 15 14 36 36 H 0.97003 * 120.00090 * 180.02562 * 21 20 18 37 37 H 1.09003 * 109.71099 * 175.65452 * 26 10 9 38 38 H 1.08997 * 109.71944 * 55.01562 * 26 10 9 39 39 H 1.08999 * 109.22705 * 280.15351 * 27 4 3 40 40 H 1.09008 * 109.22487 * 39.50359 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.0890 1.1186 0.0000 4 6 3.3981 1.2058 0.0174 5 6 4.1689 0.0396 0.0471 6 6 3.5317 -1.1712 0.0339 7 6 2.1212 -1.1762 0.0056 8 8 1.5052 -2.2298 -0.0130 9 6 5.6728 0.0649 0.1030 10 7 6.1492 1.4274 -0.1641 11 6 7.1841 1.6560 -0.9965 12 8 7.4972 2.7983 -1.2793 13 6 7.9312 0.5323 -1.5602 14 16 8.2381 -0.9921 -0.7431 15 6 9.1275 -1.6236 -2.1176 16 6 9.1859 -0.7373 -3.1044 17 6 8.5150 0.5086 -2.8274 18 6 8.4549 1.5806 -3.7342 19 1 8.1331 2.5551 -3.3977 20 6 8.8131 1.3849 -5.0766 21 7 8.8450 0.1777 -5.5748 22 14 9.2441 2.8506 -6.1515 23 1 10.7017 3.1195 -6.0605 24 1 8.8825 2.5542 -7.5610 25 1 8.4908 4.0433 -5.6875 26 6 5.4533 2.5343 0.5117 27 6 4.0155 2.5795 -0.0036 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8900 31 1 4.0914 -2.0949 0.0443 32 1 6.0757 -0.6146 -0.6481 33 1 6.0050 -0.2489 1.0925 34 1 9.5752 -2.6057 -2.1541 35 1 9.6936 -0.9333 -4.0372 36 1 9.0930 0.0423 -6.5027 37 1 5.9544 3.4757 0.2864 38 1 5.4530 2.3657 1.5885 39 1 4.0121 2.9590 -1.0254 40 1 3.4287 3.2464 0.6281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866246956.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:42 Heat of formation + Delta-G solvation = 7.642855 kcal Electronic energy + Delta-G solvation = -27612.460592 eV Core-core repulsion = 23712.343391 eV Total energy + Delta-G solvation = -3900.117200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.20585 -40.69612 -39.09715 -38.17815 -37.49359 -35.08477 -34.93070 -34.18450 -31.60519 -30.63747 -29.69574 -28.20416 -26.78260 -25.84063 -24.39302 -23.79129 -22.74317 -21.14732 -20.50795 -19.72086 -18.43601 -18.33756 -17.86898 -17.71976 -17.35742 -16.92103 -16.67729 -16.16569 -15.84530 -15.48524 -15.40302 -14.86390 -14.53763 -14.47860 -14.31254 -14.21307 -14.00031 -13.74956 -13.68698 -13.53375 -13.41368 -13.11034 -12.98500 -12.85883 -12.65331 -12.35288 -12.14133 -12.04397 -11.91936 -11.43201 -11.10317 -11.02914 -10.84518 -10.43710 -9.67728 -9.46071 -9.36288 -8.90685 -8.84847 -6.42805 -0.62896 0.37556 0.42197 1.21635 1.32008 1.36165 1.39605 1.47788 1.69734 2.03307 2.11028 2.15760 2.22693 2.51817 2.95157 3.28327 3.34335 3.44861 3.65455 4.10188 4.21722 4.28073 4.31231 4.33379 4.37938 4.49926 4.53105 4.57785 4.61113 4.64428 4.78769 4.87908 4.96638 5.01263 5.04637 5.14540 5.33129 5.39115 5.58884 5.72919 5.86962 6.34142 6.45938 6.53719 6.67415 6.84848 7.03370 7.62407 8.02192 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.003573 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.637231 B = 7834.892878 C = 8249.458601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.343 5.343 3 N -0.225 5.225 4 C 0.076 3.924 5 C -0.026 4.026 6 C -0.203 4.203 7 C 0.468 3.532 8 O -0.574 6.574 9 C 0.140 3.860 10 N -0.626 5.626 11 C 0.613 3.387 12 O -0.595 6.595 13 C -0.482 4.482 14 S 0.029 5.971 15 C -0.203 4.203 16 C -0.134 4.134 17 C 0.112 3.888 18 C -0.426 4.426 19 H 0.083 0.917 20 C 0.041 3.959 21 N -0.784 5.784 22 Si 0.984 3.016 23 H -0.255 1.255 24 H -0.255 1.255 25 H -0.267 1.267 26 C 0.114 3.886 27 C -0.058 4.058 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.177 0.823 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.172 0.828 35 H 0.142 0.858 36 H 0.302 0.698 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 0.636 8.323 12.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.163 5.163 3 N -0.050 5.050 4 C -0.093 4.093 5 C -0.033 4.033 6 C -0.233 4.233 7 C 0.269 3.731 8 O -0.457 6.457 9 C 0.015 3.985 10 N -0.360 5.360 11 C 0.409 3.591 12 O -0.480 6.480 13 C -0.600 4.600 14 S 0.286 5.714 15 C -0.337 4.337 16 C -0.167 4.167 17 C 0.102 3.898 18 C -0.457 4.457 19 H 0.101 0.899 20 C -0.180 4.180 21 N -0.408 5.408 22 Si 0.804 3.196 23 H -0.179 1.179 24 H -0.179 1.179 25 H -0.192 1.192 26 C -0.009 4.009 27 C -0.098 4.098 28 H 0.141 0.859 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.194 0.806 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.189 0.811 35 H 0.159 0.841 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.603 0.371 9.326 14.126 hybrid contribution 1.217 0.117 -2.104 2.434 sum -9.386 0.488 7.222 11.853 Atomic orbital electron populations 1.22403 0.72115 1.06675 1.04906 1.46807 1.10826 1.02299 1.56330 1.70982 1.11570 1.11598 1.10823 1.21737 0.87409 0.97363 1.02811 1.21040 0.97978 0.92994 0.91274 1.22715 0.92773 1.00321 1.07475 1.18120 0.90105 0.84229 0.80608 1.90939 1.70163 1.30119 1.54446 1.20908 0.87615 0.85368 1.04610 1.47845 1.33198 1.07308 1.47610 1.16943 0.78655 0.87257 0.76201 1.90618 1.70693 1.24584 1.62060 1.22814 1.30630 1.01630 1.04935 1.82394 1.59412 1.09515 1.20089 1.25576 1.06535 1.03708 0.97886 1.21739 1.01622 0.93563 0.99744 1.18270 0.87937 0.92369 0.91261 1.19955 1.34800 0.97607 0.93298 0.89928 1.27021 0.91269 1.00218 0.99541 1.69665 1.29899 1.24312 1.16874 0.85151 0.80033 0.77522 0.76880 1.17874 1.17867 1.19164 1.21677 0.90440 0.91361 0.97384 1.20554 0.95314 0.89852 1.04075 0.85879 0.89496 0.88726 0.80608 0.86867 0.87157 0.81082 0.84076 0.88675 0.88910 0.88262 0.90387 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.23 127.77 1.31 2.63 16 2 N -0.34 -8.72 3.61 -494.06 -1.79 -10.50 16 3 N -0.23 -5.60 10.69 -47.30 -0.51 -6.11 16 4 C 0.08 1.97 6.73 43.01 0.29 2.26 16 5 C -0.03 -0.72 5.81 -19.87 -0.12 -0.83 16 6 C -0.20 -5.67 9.75 22.64 0.22 -5.45 16 7 C 0.47 14.16 7.48 84.95 0.64 14.79 16 8 O -0.57 -20.26 17.11 -5.52 -0.09 -20.35 16 9 C 0.14 4.17 5.04 85.52 0.43 4.60 16 10 N -0.63 -21.91 2.94 -829.59 -2.44 -24.34 16 11 C 0.61 28.37 7.42 86.32 0.64 29.01 16 12 O -0.60 -31.31 14.60 -4.55 -0.07 -31.38 16 13 C -0.48 -23.19 5.67 24.67 0.14 -23.05 16 14 S 0.03 1.13 19.74 -56.49 -1.12 0.01 16 15 C -0.20 -8.15 11.07 66.64 0.74 -7.41 16 16 C -0.13 -6.34 9.12 22.61 0.21 -6.14 16 17 C 0.11 5.89 5.75 -20.89 -0.12 5.77 16 18 C -0.43 -22.99 8.80 23.33 0.21 -22.78 16 19 H 0.08 4.77 6.16 -2.91 -0.02 4.75 16 20 C 0.04 1.96 5.32 85.38 0.45 2.41 16 21 N -0.78 -36.62 10.71 21.89 0.23 -36.38 16 22 Si 0.98 36.84 29.60 68.60 2.03 38.87 16 23 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 24 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 25 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 26 C 0.11 3.02 6.39 86.18 0.55 3.57 16 27 C -0.06 -1.34 6.12 29.76 0.18 -1.16 16 28 H 0.12 1.44 8.05 -2.39 -0.02 1.42 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.18 4.41 8.06 -2.91 -0.02 4.38 16 32 H 0.11 3.90 4.82 -12.37 -0.06 3.84 16 33 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.17 5.53 8.06 -2.91 -0.02 5.51 16 35 H 0.14 6.73 6.08 -2.91 -0.02 6.72 16 36 H 0.30 12.37 8.29 -92.71 -0.77 11.60 16 37 H 0.09 2.73 7.09 -2.39 -0.02 2.71 16 38 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.13 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -68.61 346.47 3.08 -65.53 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 1.06 Total: 26.43 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.76 Total: -1.78 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -4.49 Total: -77.33 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.16 Total: -51.73 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -1.12 Total: 0.01 kcal Total: -68.61 3.08 -65.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866246956.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.174 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds