Wall clock time and date at job start Wed Apr 1 2020 03:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42099 * 108.57685 * 2 1 4 4 O 1.42101 * 108.57800 * 228.97898 * 2 1 3 5 5 C 1.81397 * 101.92272 * 114.48832 * 2 1 3 6 6 C 1.52995 * 109.47087 * 179.97438 * 5 2 1 7 7 C 1.53003 * 109.47229 * 179.97438 * 6 5 2 8 8 C 1.52995 * 109.47603 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47730 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47790 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00443 * 180.02562 * 10 9 8 12 12 O 1.21762 * 119.99461 * 359.72350 * 11 10 9 13 13 C 1.46235 * 120.00123 * 180.02562 * 11 10 9 14 14 S 1.75671 * 125.22703 * 359.74780 * 13 11 10 15 15 C 1.75473 * 92.08872 * 179.97438 * 14 13 11 16 16 C 1.32757 * 111.36442 * 0.02562 * 15 14 13 17 17 C 1.39544 * 125.22940 * 179.44185 * 13 11 10 18 18 C 1.40541 * 123.71294 * 359.97438 * 17 13 11 19 19 H 1.07998 * 119.99734 * 23.43742 * 18 17 13 20 20 C 1.40304 * 119.99774 * 203.43673 * 18 17 13 21 21 N 1.30639 * 120.00217 * 9.78715 * 20 18 17 22 22 Si 1.86801 * 119.99643 * 189.79305 * 20 18 17 23 23 H 1.48501 * 109.47426 * 60.00375 * 22 20 18 24 24 H 1.48500 * 109.47010 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47187 * 299.99907 * 22 20 18 26 26 H 1.08996 * 109.47186 * 305.51157 * 1 2 3 27 27 H 1.09004 * 109.47283 * 65.50968 * 1 2 3 28 28 H 1.08996 * 109.47478 * 185.50978 * 1 2 3 29 29 H 1.09005 * 109.46693 * 59.99950 * 5 2 1 30 30 H 1.08998 * 109.47153 * 300.00142 * 5 2 1 31 31 H 1.09005 * 109.47326 * 60.00422 * 6 5 2 32 32 H 1.08998 * 109.47310 * 300.00131 * 6 5 2 33 33 H 1.09005 * 109.46436 * 60.00105 * 7 6 5 34 34 H 1.08998 * 109.47268 * 300.00385 * 7 6 5 35 35 H 1.09002 * 109.47162 * 59.99775 * 8 7 6 36 36 H 1.09006 * 109.47001 * 300.00237 * 8 7 6 37 37 H 1.09002 * 109.47286 * 59.99478 * 9 8 7 38 38 H 1.08998 * 109.46900 * 300.00261 * 9 8 7 39 39 H 0.97004 * 119.99621 * 359.97438 * 10 9 8 40 40 H 1.08007 * 124.31201 * 179.97438 * 15 14 13 41 41 H 1.08004 * 122.78239 * 180.02562 * 16 15 14 42 42 H 0.97003 * 120.00034 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8196 1.7978 7 6 4.0215 -1.4395 3.1604 8 6 5.5382 -1.5240 3.3429 9 6 5.8543 -2.1445 4.7051 10 7 7.3066 -2.2249 4.8801 11 6 7.8213 -2.7418 6.0134 12 8 7.0792 -3.1373 6.8940 13 6 9.2710 -2.8215 6.1882 14 16 10.4640 -2.2921 5.0125 15 6 11.7946 -2.7622 6.0554 16 6 11.3553 -3.2772 7.1974 17 6 9.9192 -3.3241 7.3171 18 6 9.2463 -3.8240 8.4452 19 1 8.2338 -4.1881 8.3525 20 6 9.8900 -3.8501 9.6915 21 7 11.0345 -3.2400 9.8486 22 14 9.1105 -4.7573 11.1264 23 1 8.9486 -6.1913 10.7763 24 1 9.9832 -4.6357 12.3218 25 1 7.7805 -4.1666 11.4218 26 1 -0.3633 0.5969 0.8365 27 1 -0.3634 0.4260 -0.9352 28 1 -0.3634 -1.0229 0.0987 29 1 1.7610 -1.7370 1.6663 30 1 1.7610 -0.1171 2.4042 31 1 4.1335 0.1816 1.7465 32 1 4.1327 -1.4383 1.0088 33 1 3.5934 -2.4406 3.2122 34 1 3.5943 -0.8204 3.9492 35 1 5.9668 -0.5231 3.2909 36 1 5.9651 -2.1435 2.5540 37 1 5.4258 -3.1454 4.7568 38 1 5.4274 -1.5255 5.4942 39 1 7.8978 -1.9067 4.1799 40 1 12.8379 -2.6480 5.8002 41 1 12.0187 -3.6271 7.9746 42 1 11.4793 -3.2577 10.7104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867511764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:53 Heat of formation + Delta-G solvation = -107.957451 kcal Electronic energy + Delta-G solvation = -24185.400614 eV Core-core repulsion = 20383.421808 eV Total energy + Delta-G solvation = -3801.978806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -38.39644 -37.36380 -36.67589 -36.37301 -35.88321 -33.87552 -33.05612 -31.09709 -30.07469 -28.97789 -27.00941 -25.46546 -22.72673 -21.77112 -21.34914 -19.90286 -19.24414 -18.75349 -17.50479 -16.99521 -16.77601 -16.38320 -15.88683 -15.79652 -15.47693 -14.73163 -14.69187 -14.27612 -13.87436 -13.71332 -13.65975 -13.45335 -13.41756 -12.76892 -12.49603 -12.45475 -12.41471 -12.35684 -12.03725 -11.87149 -11.71455 -11.50016 -11.47634 -11.32112 -11.26470 -11.12147 -10.95718 -10.68622 -10.61411 -10.45487 -10.14324 -9.62928 -9.24875 -8.43731 -8.22213 -7.48345 -7.13723 -7.04227 -4.52500 -0.46094 2.16872 2.30732 2.98041 2.99751 3.03561 3.13554 3.19207 3.55914 3.64198 3.80713 3.85437 4.00873 4.20512 4.27807 4.29198 4.45157 4.51826 4.67668 4.87251 5.05452 5.13703 5.21604 5.25034 5.31453 5.48818 5.56228 5.72399 5.79320 5.96158 6.04771 6.24578 6.26732 6.69393 6.84469 7.17023 7.20849 7.34101 7.48454 7.71220 8.36047 8.46288 8.60757 8.79290 9.60424 9.86795 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.001783 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.172086 B =15701.429273 C =16857.657649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.419 3.581 3 O -0.940 6.940 4 O -0.940 6.940 5 C -0.608 4.608 6 C -0.113 4.113 7 C -0.107 4.107 8 C -0.135 4.135 9 C 0.129 3.871 10 N -0.753 5.753 11 C 0.600 3.400 12 O -0.566 6.566 13 C -0.430 4.430 14 S -0.052 6.052 15 C -0.206 4.206 16 C -0.099 4.099 17 C 0.140 3.860 18 C -0.377 4.377 19 H 0.111 0.889 20 C 0.067 3.933 21 N -0.778 5.778 22 Si 0.926 3.074 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.259 1.259 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.390 0.610 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.379 4.151 -12.606 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.601 3.399 3 O -0.937 6.937 4 O -0.937 6.937 5 C -0.738 4.738 6 C -0.151 4.151 7 C -0.147 4.147 8 C -0.173 4.173 9 C 0.004 3.996 10 N -0.406 5.406 11 C 0.397 3.603 12 O -0.449 6.449 13 C -0.549 4.549 14 S 0.203 5.797 15 C -0.339 4.339 16 C -0.131 4.131 17 C 0.129 3.871 18 C -0.408 4.408 19 H 0.129 0.871 20 C -0.155 4.155 21 N -0.403 5.403 22 Si 0.750 3.250 23 H -0.184 1.184 24 H -0.201 1.201 25 H -0.183 1.183 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.223 0.777 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.260 4.873 -13.891 21.203 hybrid contribution -0.395 -0.946 2.283 2.502 sum -15.655 3.927 -11.608 19.881 Atomic orbital electron populations 1.30291 1.27165 1.11532 1.11760 1.07894 0.78173 0.75870 0.77936 1.93610 1.78909 1.34568 1.86612 1.93610 1.78913 1.66997 1.54191 1.30334 1.06725 1.13993 1.22700 1.21367 0.90049 1.03389 1.00342 1.21450 0.96019 1.01517 0.95669 1.21832 0.95828 1.01902 0.97714 1.21047 0.82610 1.00267 0.95634 1.45839 1.06039 1.67952 1.20780 1.16848 0.86745 0.76344 0.80392 1.90646 1.60714 1.51626 1.41956 1.22588 0.92738 1.35369 1.04220 1.82696 0.99067 1.73000 1.24959 1.24942 1.00319 1.09215 0.99466 1.21727 0.96255 0.99374 0.95781 1.17938 0.89944 0.87726 0.91522 1.19999 1.01496 1.28717 0.90587 0.87125 1.26386 0.94082 0.93449 1.01585 1.69665 1.13708 1.30465 1.26433 0.86042 0.80156 0.80664 0.78179 1.18363 1.20139 1.18266 0.85359 0.85329 0.85361 0.84869 0.84862 0.89989 0.89987 0.91183 0.91163 0.91161 0.91180 0.92482 0.92464 0.77699 0.84487 0.83727 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.58 10.62 101.05 1.07 -0.51 16 2 S 2.42 14.18 5.36 -107.50 -0.58 13.60 16 3 O -0.94 -9.41 18.10 -57.83 -1.05 -10.46 16 4 O -0.94 -9.38 18.10 -57.83 -1.05 -10.43 16 5 C -0.61 -2.71 5.81 37.15 0.22 -2.49 16 6 C -0.11 -0.84 5.22 -26.73 -0.14 -0.98 16 7 C -0.11 -0.92 5.21 -26.73 -0.14 -1.06 16 8 C -0.13 -1.50 5.33 -26.74 -0.14 -1.64 16 9 C 0.13 2.02 5.67 -4.05 -0.02 1.99 16 10 N -0.75 -14.59 5.55 -61.76 -0.34 -14.93 16 11 C 0.60 14.82 7.76 -13.05 -0.10 14.72 16 12 O -0.57 -15.58 14.45 5.13 0.07 -15.51 16 13 C -0.43 -10.97 6.51 -35.88 -0.23 -11.20 16 14 S -0.05 -1.12 22.25 -107.50 -2.39 -3.51 16 15 C -0.21 -4.49 11.07 28.86 0.32 -4.17 16 16 C -0.10 -2.42 9.04 -39.13 -0.35 -2.77 16 17 C 0.14 3.76 5.67 -106.21 -0.60 3.15 16 18 C -0.38 -10.21 8.52 -37.94 -0.32 -10.53 16 19 H 0.11 3.14 6.03 -52.49 -0.32 2.82 16 20 C 0.07 1.63 5.39 -17.28 -0.09 1.53 16 21 N -0.78 -18.84 10.82 55.57 0.60 -18.24 16 22 Si 0.93 18.54 29.57 -169.99 -5.03 13.52 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 H 0.13 0.10 8.14 -51.93 -0.42 -0.32 16 27 H 0.13 0.29 8.14 -51.92 -0.42 -0.14 16 28 H 0.13 0.10 8.14 -51.93 -0.42 -0.33 16 29 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.39 6.89 7.55 -40.82 -0.31 6.58 16 40 H 0.14 2.53 8.06 -52.48 -0.42 2.11 16 41 H 0.15 3.50 6.40 -52.48 -0.34 3.16 16 42 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -36.09 379.52 -10.59 -46.69 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.01 Total: 7.51 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -0.54 Total: -13.96 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.26 Total: -33.17 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -2.02 Total: -36.40 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: 13.06 SS G_CDS: -2.97 Total: 10.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.09 -10.59 -46.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867511764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.272 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds