Wall clock time and date at job start Wed Apr 1 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42099 * 108.57685 * 2 1 4 4 O 1.42101 * 108.57800 * 228.97898 * 2 1 3 5 5 C 1.81397 * 101.92272 * 114.48832 * 2 1 3 6 6 C 1.52995 * 109.47087 * 179.97438 * 5 2 1 7 7 C 1.53003 * 109.47229 * 179.97438 * 6 5 2 8 8 C 1.52995 * 109.47603 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47730 * 180.02562 * 8 7 6 10 10 N 1.46496 * 109.47790 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00443 * 180.02562 * 10 9 8 12 12 O 1.21762 * 119.99461 * 359.72350 * 11 10 9 13 13 C 1.46235 * 120.00123 * 180.02562 * 11 10 9 14 14 S 1.75671 * 125.22703 * 359.74780 * 13 11 10 15 15 C 1.75473 * 92.08872 * 179.97438 * 14 13 11 16 16 C 1.32757 * 111.36442 * 0.02562 * 15 14 13 17 17 C 1.39544 * 125.22940 * 179.44185 * 13 11 10 18 18 C 1.40541 * 123.71294 * 359.97438 * 17 13 11 19 19 H 1.07998 * 119.99734 * 23.43742 * 18 17 13 20 20 C 1.40304 * 119.99774 * 203.43673 * 18 17 13 21 21 N 1.30639 * 120.00217 * 9.78715 * 20 18 17 22 22 Si 1.86801 * 119.99643 * 189.79305 * 20 18 17 23 23 H 1.48501 * 109.47426 * 60.00375 * 22 20 18 24 24 H 1.48500 * 109.47010 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47187 * 299.99907 * 22 20 18 26 26 H 1.08996 * 109.47186 * 305.51157 * 1 2 3 27 27 H 1.09004 * 109.47283 * 65.50968 * 1 2 3 28 28 H 1.08996 * 109.47478 * 185.50978 * 1 2 3 29 29 H 1.09005 * 109.46693 * 59.99950 * 5 2 1 30 30 H 1.08998 * 109.47153 * 300.00142 * 5 2 1 31 31 H 1.09005 * 109.47326 * 60.00422 * 6 5 2 32 32 H 1.08998 * 109.47310 * 300.00131 * 6 5 2 33 33 H 1.09005 * 109.46436 * 60.00105 * 7 6 5 34 34 H 1.08998 * 109.47268 * 300.00385 * 7 6 5 35 35 H 1.09002 * 109.47162 * 59.99775 * 8 7 6 36 36 H 1.09006 * 109.47001 * 300.00237 * 8 7 6 37 37 H 1.09002 * 109.47286 * 59.99478 * 9 8 7 38 38 H 1.08998 * 109.46900 * 300.00261 * 9 8 7 39 39 H 0.97004 * 119.99621 * 359.97438 * 10 9 8 40 40 H 1.08007 * 124.31201 * 179.97438 * 15 14 13 41 41 H 1.08004 * 122.78239 * 180.02562 * 16 15 14 42 42 H 0.97003 * 120.00034 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8196 1.7978 7 6 4.0215 -1.4395 3.1604 8 6 5.5382 -1.5240 3.3429 9 6 5.8543 -2.1445 4.7051 10 7 7.3066 -2.2249 4.8801 11 6 7.8213 -2.7418 6.0134 12 8 7.0792 -3.1373 6.8940 13 6 9.2710 -2.8215 6.1882 14 16 10.4640 -2.2921 5.0125 15 6 11.7946 -2.7622 6.0554 16 6 11.3553 -3.2772 7.1974 17 6 9.9192 -3.3241 7.3171 18 6 9.2463 -3.8240 8.4452 19 1 8.2338 -4.1881 8.3525 20 6 9.8900 -3.8501 9.6915 21 7 11.0345 -3.2400 9.8486 22 14 9.1105 -4.7573 11.1264 23 1 8.9486 -6.1913 10.7763 24 1 9.9832 -4.6357 12.3218 25 1 7.7805 -4.1666 11.4218 26 1 -0.3633 0.5969 0.8365 27 1 -0.3634 0.4260 -0.9352 28 1 -0.3634 -1.0229 0.0987 29 1 1.7610 -1.7370 1.6663 30 1 1.7610 -0.1171 2.4042 31 1 4.1335 0.1816 1.7465 32 1 4.1327 -1.4383 1.0088 33 1 3.5934 -2.4406 3.2122 34 1 3.5943 -0.8204 3.9492 35 1 5.9668 -0.5231 3.2909 36 1 5.9651 -2.1435 2.5540 37 1 5.4258 -3.1454 4.7568 38 1 5.4274 -1.5255 5.4942 39 1 7.8978 -1.9067 4.1799 40 1 12.8379 -2.6480 5.8002 41 1 12.0187 -3.6271 7.9746 42 1 11.4793 -3.2577 10.7104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867511764.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:52 Heat of formation + Delta-G solvation = -134.721428 kcal Electronic energy + Delta-G solvation = -24186.561187 eV Core-core repulsion = 20383.421808 eV Total energy + Delta-G solvation = -3803.139379 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.18230 -38.02904 -37.95206 -37.29192 -36.95950 -35.22464 -34.91343 -32.17476 -30.79557 -30.32249 -28.48629 -26.79107 -24.15007 -23.07401 -22.26066 -21.59937 -20.61763 -19.73636 -19.24473 -17.69985 -17.44489 -17.31326 -17.23123 -16.87414 -16.70172 -16.31201 -15.95874 -15.75694 -15.35513 -14.75396 -14.31091 -14.20682 -13.97241 -13.92055 -13.88559 -13.74276 -13.46409 -13.40079 -13.14235 -13.06142 -12.98815 -12.93911 -12.74804 -12.50920 -12.19546 -12.14740 -12.07023 -12.04377 -11.89486 -11.50041 -11.42901 -11.18180 -11.05954 -10.37506 -9.92814 -9.34843 -8.94615 -8.85907 -6.45702 -0.86919 0.30704 1.33432 1.36065 1.37126 1.45864 1.78066 1.94684 1.97885 2.16841 2.54496 2.58110 2.80598 3.17422 3.31554 3.66551 3.85373 3.86718 4.10906 4.13830 4.29143 4.34904 4.40108 4.42188 4.54510 4.66031 4.80787 4.85576 4.90999 4.95516 5.00243 5.01970 5.13051 5.27802 5.31283 5.37374 5.39907 5.57332 5.76438 5.84671 6.39310 6.57699 6.71782 6.97555 7.74036 8.07316 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.001783 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.172086 B =15701.429273 C =16857.657649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.638 4.638 2 S 2.417 3.583 3 O -0.992 6.992 4 O -0.992 6.992 5 C -0.598 4.598 6 C -0.123 4.123 7 C -0.104 4.104 8 C -0.126 4.126 9 C 0.126 3.874 10 N -0.739 5.739 11 C 0.589 3.411 12 O -0.605 6.605 13 C -0.469 4.469 14 S 0.007 5.993 15 C -0.192 4.192 16 C -0.129 4.129 17 C 0.110 3.890 18 C -0.416 4.416 19 H 0.084 0.916 20 C 0.034 3.966 21 N -0.793 5.793 22 Si 0.991 3.009 23 H -0.256 1.256 24 H -0.250 1.250 25 H -0.269 1.269 26 H 0.153 0.847 27 H 0.133 0.867 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.399 0.601 40 H 0.177 0.823 41 H 0.142 0.858 42 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.364 4.341 -12.864 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.791 4.791 2 S 2.606 3.394 3 O -0.989 6.989 4 O -0.989 6.989 5 C -0.729 4.729 6 C -0.162 4.162 7 C -0.143 4.143 8 C -0.164 4.164 9 C 0.002 3.998 10 N -0.392 5.392 11 C 0.385 3.615 12 O -0.492 6.492 13 C -0.587 4.587 14 S 0.263 5.737 15 C -0.326 4.326 16 C -0.161 4.161 17 C 0.098 3.902 18 C -0.447 4.447 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.417 5.417 22 Si 0.810 3.190 23 H -0.180 1.180 24 H -0.174 1.174 25 H -0.194 1.194 26 H 0.171 0.829 27 H 0.151 0.849 28 H 0.171 0.829 29 H 0.178 0.822 30 H 0.178 0.822 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.234 0.766 40 H 0.194 0.806 41 H 0.159 0.841 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.194 5.103 -14.228 22.152 hybrid contribution -0.130 -0.953 2.278 2.473 sum -16.323 4.150 -11.950 20.651 Atomic orbital electron populations 1.30089 1.21920 1.13857 1.13216 1.07540 0.79919 0.74169 0.77801 1.93543 1.81096 1.36898 1.87398 1.93543 1.81090 1.67636 1.56629 1.30225 1.04835 1.15987 1.21818 1.21394 0.92400 1.02959 0.99401 1.21428 0.93851 1.02393 0.96608 1.21797 0.98127 1.01699 0.94779 1.21273 0.80093 1.00243 0.98144 1.45717 1.07942 1.66208 1.19288 1.17056 0.86730 0.76442 0.81252 1.90606 1.61578 1.53384 1.43614 1.23076 0.94346 1.35658 1.05664 1.82304 0.96984 1.71703 1.22756 1.25449 1.02425 1.06420 0.98274 1.21621 0.95151 1.02101 0.97229 1.18412 0.91555 0.88048 0.92139 1.19993 1.00995 1.31192 0.92519 0.89762 1.27083 0.94606 0.93841 1.03103 1.69646 1.14156 1.30176 1.27752 0.85119 0.78966 0.79221 0.75671 1.18043 1.17377 1.19399 0.82895 0.84873 0.82869 0.82171 0.82221 0.90494 0.90410 0.90324 0.90426 0.90704 0.90565 0.93118 0.93353 0.76610 0.80582 0.84093 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.03 10.62 113.37 1.20 0.17 16 2 S 2.42 26.09 5.36 -56.49 -0.30 25.79 16 3 O -0.99 -20.09 18.10 -127.37 -2.30 -22.39 16 4 O -0.99 -19.98 18.10 -127.37 -2.31 -22.28 16 5 C -0.60 -3.82 5.81 71.98 0.42 -3.40 16 6 C -0.12 -1.65 5.22 30.59 0.16 -1.49 16 7 C -0.10 -1.60 5.21 30.59 0.16 -1.44 16 8 C -0.13 -2.68 5.33 30.59 0.16 -2.51 16 9 C 0.13 3.94 5.67 86.38 0.49 4.43 16 10 N -0.74 -28.86 5.55 -467.50 -2.59 -31.45 16 11 C 0.59 29.97 7.76 86.32 0.67 30.64 16 12 O -0.61 -34.92 14.45 -4.55 -0.07 -34.98 16 13 C -0.47 -24.37 6.51 24.66 0.16 -24.21 16 14 S 0.01 0.29 22.25 -56.49 -1.26 -0.97 16 15 C -0.19 -8.06 11.07 66.64 0.74 -7.32 16 16 C -0.13 -6.32 9.04 22.60 0.20 -6.11 16 17 C 0.11 6.08 5.67 -20.89 -0.12 5.96 16 18 C -0.42 -23.56 8.52 23.33 0.20 -23.36 16 19 H 0.08 5.09 6.03 -2.91 -0.02 5.08 16 20 C 0.03 1.68 5.39 85.37 0.46 2.14 16 21 N -0.79 -38.66 10.82 21.89 0.24 -38.42 16 22 Si 0.99 38.44 29.57 68.60 2.03 40.47 16 23 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 24 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 26 H 0.15 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.15 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.40 13.87 7.55 -92.71 -0.70 13.17 16 40 H 0.18 5.90 8.06 -2.91 -0.02 5.88 16 41 H 0.14 6.90 6.40 -2.91 -0.02 6.89 16 42 H 0.30 12.91 8.29 -92.71 -0.77 12.14 16 Total: -1.00 -83.01 379.52 -1.32 -84.32 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.34 Total: 26.42 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.91 Total: -26.49 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -2.36 Total: -69.87 kcal Atomic # 8 Polarization: -74.99 SS G_CDS: -4.68 Total: -79.66 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 16 Polarization: 26.38 SS G_CDS: -1.56 Total: 24.82 kcal Total: -83.01 -1.32 -84.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867511764.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.397 kcal (2) G-P(sol) polarization free energy of solvation -83.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds