Wall clock time and date at job start Wed Apr 1 2020 03:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00089 * 2 1 4 4 O 1.20827 * 119.99400 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00126 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46770 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46746 * 179.97438 * 6 5 3 8 8 C 1.36935 * 120.00268 * 270.00374 * 7 6 5 9 9 H 1.08002 * 119.99462 * 325.80248 * 8 7 6 10 10 C 1.38813 * 120.00248 * 145.80884 * 8 7 6 11 11 N 1.31616 * 119.99748 * 338.28727 * 10 8 7 12 12 Si 1.86799 * 119.99937 * 158.28758 * 10 8 7 13 13 H 1.48497 * 109.47329 * 90.00184 * 12 10 8 14 14 H 1.48504 * 109.47020 * 209.99671 * 12 10 8 15 15 H 1.48495 * 109.47275 * 329.99925 * 12 10 8 16 16 C 1.46503 * 119.99647 * 90.00128 * 7 6 5 17 17 C 1.53002 * 109.47042 * 84.39095 * 16 7 6 18 18 O 1.42902 * 109.47206 * 64.99718 * 17 16 7 19 19 C 1.35973 * 116.99924 * 180.02562 * 18 17 16 20 20 C 1.38682 * 120.03362 * 0.25642 * 19 18 17 21 21 C 1.38153 * 119.98172 * 180.25658 * 20 19 18 22 22 C 1.38470 * 120.05212 * 359.48357 * 21 20 19 23 23 F 1.35100 * 119.96951 * 180.27850 * 22 21 20 24 24 C 1.38435 * 120.06521 * 0.26434 * 22 21 20 25 25 C 1.38262 * 120.01967 * 359.97438 * 24 22 21 26 26 Cl 1.73603 * 120.02828 * 180.02562 * 25 24 22 27 27 H 1.08994 * 109.47514 * 299.99708 * 1 2 3 28 28 H 1.09000 * 109.46790 * 60.00433 * 1 2 3 29 29 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46903 * 59.99973 * 5 3 2 31 31 H 1.08993 * 109.47114 * 300.00025 * 5 3 2 32 32 H 1.08995 * 109.46823 * 60.00446 * 6 5 3 33 33 H 1.08993 * 109.47440 * 299.99969 * 6 5 3 34 34 H 0.97001 * 120.00003 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.47544 * 324.38808 * 16 7 6 36 36 H 1.09006 * 109.47145 * 204.38679 * 16 7 6 37 37 H 1.09007 * 109.46943 * 304.99678 * 17 16 7 38 38 H 1.09005 * 109.47258 * 185.00028 * 17 16 7 39 39 H 1.08004 * 120.01264 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.97892 * 179.76980 * 21 20 19 41 41 H 1.08000 * 119.99374 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1458 2.8555 1.1874 9 1 5.7181 3.3602 2.0411 10 6 7.3877 2.2442 1.2928 11 7 7.7268 1.2934 0.4483 12 14 8.5773 2.7711 2.6332 13 1 8.3471 1.9511 3.8496 14 1 9.9720 2.5764 2.1617 15 1 8.3586 4.2044 2.9537 16 6 6.1956 2.8562 -1.2672 17 6 6.2535 4.2964 -1.7804 18 8 7.0214 5.0936 -0.8766 19 6 7.1712 6.4088 -1.1879 20 6 6.5865 6.9212 -2.3363 21 6 6.7438 8.2564 -2.6542 22 6 7.4759 9.0860 -1.8216 23 9 7.6239 10.3927 -2.1313 24 6 8.0561 8.5778 -0.6721 25 6 7.9046 7.2409 -0.3536 26 17 8.6315 6.6035 1.0883 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9564 0.7806 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 3.6100 3.2367 0.8893 33 1 3.6107 3.2357 -0.8906 34 1 8.5944 0.8659 0.5221 35 1 5.6864 2.2298 -1.9996 36 1 7.2086 2.4845 -1.1128 37 1 5.2426 4.6982 -1.8504 38 1 6.7199 4.3127 -2.7655 39 1 6.0121 6.2757 -2.9842 40 1 6.2915 8.6546 -3.5505 41 1 8.6272 9.2257 -0.0237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879474114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:54 Heat of formation + Delta-G solvation = -126.638343 kcal Electronic energy + Delta-G solvation = -27841.036304 eV Core-core repulsion = 23469.990552 eV Total energy + Delta-G solvation = -4371.045752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.83001 -40.07832 -39.84307 -37.31567 -36.39134 -36.05232 -35.58009 -32.05674 -31.09064 -30.75932 -29.32160 -28.20337 -27.27145 -24.55012 -23.85650 -22.60439 -22.04574 -20.76392 -19.67701 -18.21591 -17.34844 -17.25514 -16.93802 -16.51713 -16.21946 -16.13811 -15.68376 -15.19524 -14.85394 -14.74552 -14.21015 -14.03370 -13.83238 -13.75933 -13.36369 -13.26390 -12.84953 -12.74058 -12.46004 -12.19142 -12.09157 -11.78915 -11.39175 -11.33419 -11.08498 -10.93595 -10.84989 -10.71442 -10.61057 -10.49157 -10.31617 -10.14433 -9.97439 -9.92186 -9.86672 -8.97428 -8.52236 -7.84357 -6.76134 -5.85836 -3.37277 1.01986 1.22986 2.37967 2.60136 3.07286 3.39052 3.47168 3.49817 3.54331 3.59808 4.32000 4.49299 4.69553 4.80871 5.11525 5.11770 5.18063 5.23784 5.30346 5.38315 5.41653 5.57640 5.59034 5.65699 5.79602 5.86553 5.88373 5.98379 6.05304 6.10734 6.29122 6.30571 6.49924 6.60276 6.69434 6.70451 6.91136 7.46519 7.76795 7.81699 8.11363 8.43465 9.09943 9.73870 10.25925 11.17663 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003547 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.131303 B = 7891.337177 C = 9862.753604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.519 6.519 5 C -0.131 4.131 6 C 0.159 3.841 7 N -0.572 5.572 8 C -0.245 4.245 9 H 0.062 0.938 10 C 0.022 3.978 11 N -0.892 5.892 12 Si 0.889 3.111 13 H -0.290 1.290 14 H -0.290 1.290 15 H -0.269 1.269 16 C 0.140 3.860 17 C 0.037 3.963 18 O -0.256 6.256 19 C 0.148 3.852 20 C -0.182 4.182 21 C -0.107 4.107 22 C 0.051 3.949 23 F -0.142 7.142 24 C -0.108 4.108 25 C -0.055 4.055 26 Cl -0.035 7.035 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.255 0.745 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 6.118 -6.393 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.305 3.695 4 O -0.408 6.408 5 C -0.172 4.172 6 C 0.032 3.968 7 N -0.291 5.291 8 C -0.375 4.375 9 H 0.080 0.920 10 C -0.178 4.178 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.218 1.218 14 H -0.216 1.216 15 H -0.194 1.194 16 C 0.013 3.987 17 C -0.041 4.041 18 O -0.167 6.167 19 C 0.099 3.901 20 C -0.201 4.201 21 C -0.126 4.126 22 C 0.031 3.969 23 F -0.121 7.121 24 C -0.128 4.128 25 C -0.082 4.082 26 Cl -0.006 7.006 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.520 6.173 -6.096 9.783 hybrid contribution 0.353 0.417 0.460 0.714 sum -4.167 6.589 -5.636 9.621 Atomic orbital electron populations 1.23152 0.77721 1.03005 1.02110 1.86603 1.22521 1.34767 1.84392 1.24718 0.92977 0.80691 0.71064 1.90605 1.67604 1.36421 1.46134 1.22474 0.83937 1.04930 1.05810 1.20812 0.85700 0.90189 1.00080 1.43859 0.99227 1.83435 1.02559 1.18945 1.00468 1.27904 0.90148 0.92021 1.24940 0.99893 0.95149 0.97828 1.69913 1.21659 1.22902 1.39090 0.86496 0.80768 0.79441 0.81438 1.21762 1.21586 1.19371 1.21147 1.02549 0.88191 0.86835 1.24061 0.93099 0.95652 0.91263 1.86582 1.67546 1.14120 1.48422 1.19055 0.92764 0.86457 0.91841 1.21110 1.04741 0.95989 0.98244 1.20951 0.98674 0.93246 0.99736 1.17216 1.04058 0.78792 0.96802 1.91474 1.94663 1.33010 1.92949 1.20761 1.01255 0.93790 0.96984 1.19947 1.03235 0.92318 0.92724 1.98425 1.81212 1.86384 1.34575 0.92273 0.92356 0.88713 0.88614 0.87362 0.92658 0.93914 0.93512 0.93135 0.86716 0.93325 0.93465 0.83778 0.84438 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.57 10.57 -39.27 -0.41 -5.98 16 3 C 0.46 7.86 7.96 36.00 0.29 8.15 16 4 O -0.52 -9.82 15.73 -18.75 -0.29 -10.11 16 5 C -0.13 -2.33 6.14 -27.88 -0.17 -2.50 16 6 C 0.16 3.12 4.98 -4.04 -0.02 3.10 16 7 N -0.57 -12.68 2.41 -173.23 -0.42 -13.10 16 8 C -0.25 -6.18 9.28 -15.06 -0.14 -6.32 16 9 H 0.06 1.61 7.92 -52.49 -0.42 1.20 16 10 C 0.02 0.56 4.93 -17.43 -0.09 0.47 16 11 N -0.89 -23.73 11.33 55.49 0.63 -23.10 16 12 Si 0.89 21.27 29.61 -169.99 -5.03 16.24 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.14 2.84 5.63 -4.04 -0.02 2.82 16 17 C 0.04 0.64 5.08 37.16 0.19 0.82 16 18 O -0.26 -5.03 9.34 -19.66 -0.18 -5.21 16 19 C 0.15 2.50 6.68 -39.21 -0.26 2.24 16 20 C -0.18 -2.48 9.04 -39.45 -0.36 -2.84 16 21 C -0.11 -1.32 10.02 -39.53 -0.40 -1.71 16 22 C 0.05 0.68 7.30 -39.42 -0.29 0.39 16 23 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 24 C -0.11 -1.51 9.80 -39.50 -0.39 -1.89 16 25 C -0.05 -0.90 6.33 -39.37 -0.25 -1.15 16 26 Cl -0.04 -0.64 28.50 -51.86 -1.48 -2.11 16 27 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16 32 H 0.06 1.14 8.00 -51.93 -0.42 0.73 16 33 H 0.04 0.78 8.00 -51.93 -0.42 0.37 16 34 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.12 2.74 5.35 -51.93 -0.28 2.46 16 37 H 0.05 0.79 7.62 -51.93 -0.40 0.39 16 38 H 0.05 0.69 7.67 -51.93 -0.40 0.29 16 39 H 0.14 1.70 6.30 -52.48 -0.33 1.37 16 40 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -28.67 373.86 -7.52 -36.19 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.16 Total: 0.34 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.84 Total: 3.03 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.21 Total: -36.20 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.89 Total: -21.30 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.67 -7.52 -36.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.448 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds