Wall clock time and date at job start Wed Apr 1 2020 03:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00089 * 2 1 4 4 O 1.20827 * 119.99400 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00126 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46770 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46746 * 179.97438 * 6 5 3 8 8 C 1.36935 * 120.00268 * 270.00374 * 7 6 5 9 9 H 1.08002 * 119.99462 * 325.80248 * 8 7 6 10 10 C 1.38813 * 120.00248 * 145.80884 * 8 7 6 11 11 N 1.31616 * 119.99748 * 338.28727 * 10 8 7 12 12 Si 1.86799 * 119.99937 * 158.28758 * 10 8 7 13 13 H 1.48497 * 109.47329 * 90.00184 * 12 10 8 14 14 H 1.48504 * 109.47020 * 209.99671 * 12 10 8 15 15 H 1.48495 * 109.47275 * 329.99925 * 12 10 8 16 16 C 1.46503 * 119.99647 * 90.00128 * 7 6 5 17 17 C 1.53002 * 109.47042 * 84.39095 * 16 7 6 18 18 O 1.42902 * 109.47206 * 64.99718 * 17 16 7 19 19 C 1.35973 * 116.99924 * 180.02562 * 18 17 16 20 20 C 1.38682 * 120.03362 * 0.25642 * 19 18 17 21 21 C 1.38153 * 119.98172 * 180.25658 * 20 19 18 22 22 C 1.38470 * 120.05212 * 359.48357 * 21 20 19 23 23 F 1.35100 * 119.96951 * 180.27850 * 22 21 20 24 24 C 1.38435 * 120.06521 * 0.26434 * 22 21 20 25 25 C 1.38262 * 120.01967 * 359.97438 * 24 22 21 26 26 Cl 1.73603 * 120.02828 * 180.02562 * 25 24 22 27 27 H 1.08994 * 109.47514 * 299.99708 * 1 2 3 28 28 H 1.09000 * 109.46790 * 60.00433 * 1 2 3 29 29 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46903 * 59.99973 * 5 3 2 31 31 H 1.08993 * 109.47114 * 300.00025 * 5 3 2 32 32 H 1.08995 * 109.46823 * 60.00446 * 6 5 3 33 33 H 1.08993 * 109.47440 * 299.99969 * 6 5 3 34 34 H 0.97001 * 120.00003 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.47544 * 324.38808 * 16 7 6 36 36 H 1.09006 * 109.47145 * 204.38679 * 16 7 6 37 37 H 1.09007 * 109.46943 * 304.99678 * 17 16 7 38 38 H 1.09005 * 109.47258 * 185.00028 * 17 16 7 39 39 H 1.08004 * 120.01264 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.97892 * 179.76980 * 21 20 19 41 41 H 1.08000 * 119.99374 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1458 2.8555 1.1874 9 1 5.7181 3.3602 2.0411 10 6 7.3877 2.2442 1.2928 11 7 7.7268 1.2934 0.4483 12 14 8.5773 2.7711 2.6332 13 1 8.3471 1.9511 3.8496 14 1 9.9720 2.5764 2.1617 15 1 8.3586 4.2044 2.9537 16 6 6.1956 2.8562 -1.2672 17 6 6.2535 4.2964 -1.7804 18 8 7.0214 5.0936 -0.8766 19 6 7.1712 6.4088 -1.1879 20 6 6.5865 6.9212 -2.3363 21 6 6.7438 8.2564 -2.6542 22 6 7.4759 9.0860 -1.8216 23 9 7.6239 10.3927 -2.1313 24 6 8.0561 8.5778 -0.6721 25 6 7.9046 7.2409 -0.3536 26 17 8.6315 6.6035 1.0883 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9564 0.7806 -0.8891 31 1 3.9557 0.7810 0.8908 32 1 3.6100 3.2367 0.8893 33 1 3.6107 3.2357 -0.8906 34 1 8.5944 0.8659 0.5221 35 1 5.6864 2.2298 -1.9996 36 1 7.2086 2.4845 -1.1128 37 1 5.2426 4.6982 -1.8504 38 1 6.7199 4.3127 -2.7655 39 1 6.0121 6.2757 -2.9842 40 1 6.2915 8.6546 -3.5505 41 1 8.6272 9.2257 -0.0237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:53 Heat of formation + Delta-G solvation = -140.376014 kcal Electronic energy + Delta-G solvation = -27841.632015 eV Core-core repulsion = 23469.990552 eV Total energy + Delta-G solvation = -4371.641463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.87734 -41.39760 -41.05197 -38.64851 -37.74073 -37.33736 -37.09706 -33.84272 -32.43569 -32.02238 -30.65743 -29.53889 -28.46116 -26.24737 -25.16265 -23.82126 -23.32134 -22.17163 -21.19420 -19.38827 -18.86058 -18.53452 -18.31858 -17.74629 -17.51562 -17.41341 -16.89248 -16.62826 -16.38465 -15.93295 -15.55493 -15.52904 -15.20810 -14.99398 -14.71634 -14.46732 -14.19351 -14.01494 -13.81091 -13.62059 -13.39096 -13.12742 -12.91356 -12.79648 -12.59657 -12.50604 -12.30116 -12.20060 -12.08040 -11.82404 -11.78444 -11.69904 -11.51370 -11.50466 -11.41284 -10.44826 -10.08312 -9.03927 -8.59149 -7.80138 -5.31980 -0.06063 0.10741 1.13232 1.24213 1.44558 1.50331 1.60062 1.87241 2.35209 2.40347 2.57433 3.25156 3.35718 3.63587 3.64747 3.83691 4.03628 4.04939 4.22597 4.26340 4.34136 4.35678 4.37713 4.45019 4.54214 4.60074 4.70446 4.73720 4.80973 4.84407 4.99623 5.01211 5.09255 5.10445 5.27069 5.46430 5.61537 5.74768 5.82452 6.44023 6.60770 6.80507 7.22802 7.89760 8.37616 9.18898 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003547 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.131303 B = 7891.337177 C = 9862.753604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.120 4.120 6 C 0.165 3.835 7 N -0.584 5.584 8 C -0.236 4.236 9 H 0.045 0.955 10 C -0.011 4.011 11 N -0.910 5.910 12 Si 0.921 3.079 13 H -0.293 1.293 14 H -0.297 1.297 15 H -0.268 1.268 16 C 0.138 3.862 17 C 0.043 3.957 18 O -0.293 6.293 19 C 0.123 3.877 20 C -0.174 4.174 21 C -0.093 4.093 22 C 0.053 3.947 23 F -0.139 7.139 24 C -0.107 4.107 25 C -0.074 4.074 26 Cl -0.064 7.064 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.167 0.833 40 H 0.174 0.826 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 7.003 -8.382 12.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.316 3.684 4 O -0.430 6.430 5 C -0.161 4.161 6 C 0.038 3.962 7 N -0.304 5.304 8 C -0.367 4.367 9 H 0.063 0.937 10 C -0.208 4.208 11 N -0.555 5.555 12 Si 0.751 3.249 13 H -0.220 1.220 14 H -0.224 1.224 15 H -0.193 1.193 16 C 0.012 3.988 17 C -0.034 4.034 18 O -0.205 6.205 19 C 0.075 3.925 20 C -0.192 4.192 21 C -0.111 4.111 22 C 0.033 3.967 23 F -0.117 7.117 24 C -0.126 4.126 25 C -0.101 4.101 26 Cl -0.035 7.035 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.185 0.815 40 H 0.191 0.809 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.130 7.063 -8.095 12.369 hybrid contribution 0.727 0.225 1.007 1.262 sum -5.403 7.288 -7.088 11.513 Atomic orbital electron populations 1.23525 0.75156 1.05522 1.02442 1.86561 1.24946 1.33368 1.83795 1.24285 0.92480 0.80967 0.70629 1.90599 1.67942 1.37177 1.47238 1.22151 0.85047 1.03431 1.05469 1.20715 0.84186 0.91277 1.00020 1.43936 1.00181 1.83946 1.02308 1.18888 1.00578 1.26439 0.90790 0.93737 1.25224 1.00810 0.95747 0.99049 1.69993 1.21459 1.23871 1.40133 0.85984 0.79472 0.79137 0.80280 1.22000 1.22411 1.19274 1.21099 1.00586 0.90626 0.86505 1.23882 0.94100 0.93507 0.91923 1.86506 1.68497 1.15711 1.49771 1.19316 0.94227 0.85580 0.93397 1.21342 1.03947 0.96824 0.97117 1.21312 0.97206 0.92360 1.00255 1.17320 1.03747 0.79037 0.96570 1.91492 1.94611 1.32787 1.92839 1.20893 1.01152 0.92983 0.97563 1.20112 1.04426 0.93300 0.92262 1.98405 1.81809 1.86902 1.36355 0.92253 0.91770 0.85185 0.87714 0.89012 0.94361 0.92244 0.94149 0.91299 0.90123 0.91954 0.90521 0.81550 0.80885 0.82240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.37 -10.58 10.57 -51.45 -0.54 -11.12 16 3 C 0.47 15.49 7.96 71.24 0.57 16.06 16 4 O -0.54 -19.71 15.73 21.96 0.35 -19.36 16 5 C -0.12 -4.22 6.14 29.85 0.18 -4.03 16 6 C 0.16 6.36 4.98 86.38 0.43 6.79 16 7 N -0.58 -25.93 2.41 -701.99 -1.69 -27.62 16 8 C -0.24 -12.17 9.28 84.03 0.78 -11.39 16 9 H 0.04 2.41 7.92 -2.91 -0.02 2.39 16 10 C -0.01 -0.57 4.93 84.86 0.42 -0.16 16 11 N -0.91 -49.43 11.33 21.65 0.25 -49.19 16 12 Si 0.92 44.75 29.61 68.60 2.03 46.78 16 13 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 14 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 15 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 16 C 0.14 5.54 5.63 86.38 0.49 6.03 16 17 C 0.04 1.40 5.08 71.98 0.37 1.77 16 18 O -0.29 -11.38 9.34 -93.24 -0.87 -12.25 16 19 C 0.12 4.01 6.68 22.51 0.15 4.16 16 20 C -0.17 -4.21 9.04 22.36 0.20 -4.01 16 21 C -0.09 -1.92 10.02 22.31 0.22 -1.70 16 22 C 0.05 1.26 7.30 22.37 0.16 1.42 16 23 F -0.14 -3.21 17.27 44.97 0.78 -2.43 16 24 C -0.11 -2.81 9.80 22.32 0.22 -2.59 16 25 C -0.07 -2.38 6.33 22.41 0.14 -2.24 16 26 Cl -0.06 -2.36 28.50 -2.72 -0.08 -2.43 16 27 H 0.06 1.20 8.13 -2.39 -0.02 1.19 16 28 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 29 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.04 1.59 8.00 -2.39 -0.02 1.57 16 33 H 0.06 2.09 8.00 -2.39 -0.02 2.07 16 34 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 35 H 0.07 2.44 8.11 -2.39 -0.02 2.42 16 36 H 0.08 3.90 5.35 -2.38 -0.01 3.88 16 37 H 0.06 1.86 7.62 -2.38 -0.02 1.84 16 38 H 0.08 2.04 7.67 -2.38 -0.02 2.02 16 39 H 0.17 3.24 6.30 -2.91 -0.02 3.22 16 40 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -63.10 373.86 6.80 -56.30 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.06 Total: 9.49 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 5.53 Total: 11.84 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -1.44 Total: -76.81 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -1.07 Total: -42.74 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.43 kcal Total: -63.10 6.80 -56.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.074 kcal (2) G-P(sol) polarization free energy of solvation -63.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds