Wall clock time and date at job start Wed Apr 1 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 116.99898 * 2 1 4 4 O 1.20830 * 120.00096 * 359.97438 * 3 2 1 5 5 C 1.50691 * 119.99823 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47300 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47464 * 185.82926 * 6 5 3 8 8 C 1.36939 * 119.99702 * 82.70896 * 7 6 5 9 9 H 1.08006 * 119.99758 * 171.08637 * 8 7 6 10 10 C 1.38807 * 120.00617 * 351.09154 * 8 7 6 11 11 N 1.31624 * 119.99628 * 1.67557 * 10 8 7 12 12 Si 1.86798 * 120.00260 * 181.68095 * 10 8 7 13 13 H 1.48505 * 109.46909 * 89.99669 * 12 10 8 14 14 H 1.48505 * 109.46983 * 209.99529 * 12 10 8 15 15 H 1.48494 * 109.47064 * 329.99941 * 12 10 8 16 16 C 1.46502 * 119.99965 * 262.70985 * 7 6 5 17 17 C 1.53000 * 109.46874 * 273.13607 * 16 7 6 18 18 H 1.08995 * 109.47281 * 301.75671 * 17 16 7 19 19 O 1.42898 * 109.47129 * 61.76322 * 17 16 7 20 20 C 1.50706 * 109.46516 * 181.75971 * 17 16 7 21 21 C 1.38245 * 119.97870 * 265.02194 * 20 17 16 22 22 C 1.38179 * 120.03731 * 179.97438 * 21 20 17 23 23 C 1.38488 * 120.00264 * 359.97438 * 22 21 20 24 24 F 1.35097 * 120.02043 * 179.97438 * 23 22 21 25 25 C 1.38412 * 119.96068 * 0.02562 * 23 22 21 26 26 C 1.38338 * 119.98144 * 85.00208 * 20 17 16 27 27 Cl 1.73596 * 120.00181 * 359.97438 * 26 20 17 28 28 H 1.09003 * 109.47064 * 60.00261 * 1 2 3 29 29 H 1.09003 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47163 * 300.00503 * 1 2 3 31 31 H 1.09001 * 109.47457 * 60.00186 * 5 3 2 32 32 H 1.09000 * 109.47580 * 299.99880 * 5 3 2 33 33 H 1.08998 * 109.47429 * 65.82297 * 6 5 3 34 34 H 1.09004 * 109.47044 * 305.82587 * 6 5 3 35 35 H 0.96998 * 120.00095 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.46896 * 153.13333 * 16 7 6 37 37 H 1.09003 * 109.46764 * 33.13493 * 16 7 6 38 38 H 0.96691 * 114.00357 * 59.99464 * 19 17 16 39 39 H 1.08006 * 119.98059 * 359.97438 * 21 20 17 40 40 H 1.08005 * 120.00164 * 180.27232 * 22 21 20 41 41 H 1.08003 * 120.02388 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 0.0002 7 7 5.4562 2.8209 -0.1407 8 6 6.0293 2.7421 -1.3819 9 1 7.0834 2.9432 -1.5037 10 6 5.2554 2.4040 -2.4835 11 7 3.9644 2.1914 -2.3405 12 14 6.0462 2.2507 -4.1689 13 1 6.5058 0.8536 -4.3747 14 1 5.0538 2.6046 -5.2154 15 1 7.2077 3.1718 -4.2563 16 6 6.2992 2.9839 1.0464 17 6 6.4380 4.4722 1.3728 18 1 6.8667 4.9935 0.5169 19 8 5.1503 5.0175 1.6666 20 6 7.3402 4.6423 2.5679 21 6 6.7961 4.7527 3.8340 22 6 7.6221 4.9082 4.9307 23 6 8.9960 4.9528 4.7621 24 9 9.8040 5.1053 5.8340 25 6 9.5408 4.8423 3.4945 26 6 8.7123 4.6874 2.3975 27 17 9.3945 4.5474 0.8073 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 3.7000 3.2093 0.9381 34 1 3.5260 3.2616 -0.8325 35 1 3.4236 1.9547 -3.1102 36 1 7.2849 2.5608 0.8528 37 1 5.8417 2.4679 1.8905 38 1 4.7088 4.6004 2.4189 39 1 5.7247 4.7175 3.9659 40 1 7.1967 4.9900 5.9200 41 1 10.6120 4.8774 3.3617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879474499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:47 Heat of formation + Delta-G solvation = -125.506130 kcal Electronic energy + Delta-G solvation = -28246.650660 eV Core-core repulsion = 23875.654004 eV Total energy + Delta-G solvation = -4370.996656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.08156 -39.74641 -39.52458 -37.15632 -36.44607 -35.83947 -35.10699 -31.82003 -31.08236 -30.92840 -30.25576 -27.46376 -26.87610 -24.50859 -23.44434 -23.16722 -21.45395 -20.70825 -19.60477 -18.15057 -17.23730 -16.85829 -16.80867 -16.21281 -15.80501 -15.78103 -15.60639 -15.22757 -14.97913 -14.65324 -14.50633 -14.02241 -13.69306 -13.46243 -13.29759 -13.11537 -12.93999 -12.61242 -12.41233 -11.75395 -11.71191 -11.52192 -11.44130 -11.24752 -11.16510 -11.11243 -10.80248 -10.61026 -10.54156 -10.17531 -10.13589 -10.00644 -9.88149 -9.52653 -9.47332 -9.12642 -8.69152 -8.42050 -6.94037 -5.69347 -3.21076 0.85524 0.93085 2.04066 3.21671 3.27825 3.35990 3.42571 3.44213 3.56852 4.06781 4.40121 4.52647 4.64238 4.70412 4.80265 5.15239 5.31731 5.33992 5.43939 5.48389 5.53898 5.66752 5.72591 5.76167 5.81983 5.83967 5.98816 6.06953 6.10137 6.38897 6.43884 6.55110 6.63080 6.80879 6.83171 7.15478 7.52031 7.79879 7.92162 8.03034 8.40045 8.71596 9.19266 9.76846 10.18142 11.21807 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.003591 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.383307 B = 7794.660675 C = 9819.286459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.374 6.374 3 C 0.475 3.525 4 O -0.519 6.519 5 C -0.106 4.106 6 C 0.190 3.810 7 N -0.587 5.587 8 C -0.239 4.239 9 H 0.076 0.924 10 C -0.007 4.007 11 N -0.910 5.910 12 Si 0.911 3.089 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.282 1.282 16 C 0.129 3.871 17 C 0.115 3.885 18 H 0.116 0.884 19 O -0.540 6.540 20 C -0.102 4.102 21 C -0.077 4.077 22 C -0.145 4.145 23 C 0.097 3.903 24 F -0.138 7.138 25 C -0.144 4.144 26 C -0.007 4.007 27 Cl -0.044 7.044 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.135 0.865 32 H 0.052 0.948 33 H 0.014 0.986 34 H 0.115 0.885 35 H 0.251 0.749 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.361 0.639 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 0.779 12.487 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.292 6.292 3 C 0.319 3.681 4 O -0.407 6.407 5 C -0.146 4.146 6 C 0.065 3.935 7 N -0.305 5.305 8 C -0.368 4.368 9 H 0.094 0.906 10 C -0.202 4.202 11 N -0.559 5.559 12 Si 0.742 3.258 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.208 1.208 16 C 0.000 4.000 17 C 0.053 3.947 18 H 0.134 0.866 19 O -0.344 6.344 20 C -0.104 4.104 21 C -0.096 4.096 22 C -0.164 4.164 23 C 0.077 3.923 24 F -0.117 7.117 25 C -0.164 4.164 26 C -0.034 4.034 27 Cl -0.015 7.015 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.132 0.868 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.208 0.792 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.365 1.405 11.678 12.546 hybrid contribution 0.345 -0.470 -0.319 0.665 sum 4.711 0.934 11.360 12.333 Atomic orbital electron populations 1.23037 0.78609 1.02319 1.01833 1.86580 1.21845 1.35687 1.85081 1.24543 0.92898 0.80177 0.70472 1.90552 1.67538 1.36365 1.46208 1.22603 0.83953 1.04449 1.03578 1.20855 0.82171 0.90942 0.99554 1.44048 1.01840 1.83191 1.01463 1.19390 0.93939 1.39244 0.84182 0.90574 1.24818 0.95886 1.01249 0.98291 1.70168 1.04113 1.53170 1.28440 0.86133 0.78078 0.77743 0.83875 1.21586 1.21714 1.20752 1.21357 0.96435 0.91512 0.90651 1.22065 0.81225 0.99340 0.92066 0.86604 1.86730 1.30952 1.62863 1.53837 1.20957 0.93210 0.98578 0.97682 1.20747 1.00468 0.97951 0.90401 1.21179 0.91467 1.03039 1.00686 1.17408 0.88237 1.03626 0.83018 1.91504 1.73006 1.93211 1.53931 1.20929 1.01074 1.04237 0.90158 1.20453 0.92516 1.03331 0.87147 1.98419 1.84637 1.95927 1.22478 0.92480 0.89305 0.92796 0.84717 0.93017 0.96789 0.86766 0.93756 0.91963 0.93970 0.79208 0.84095 0.84279 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -7.06 10.57 -39.26 -0.41 -7.47 16 3 C 0.47 10.15 7.96 36.00 0.29 10.43 16 4 O -0.52 -12.15 15.65 -18.75 -0.29 -12.44 16 5 C -0.11 -2.30 5.20 -27.89 -0.15 -2.45 16 6 C 0.19 4.36 4.03 -4.04 -0.02 4.35 16 7 N -0.59 -13.14 2.51 -173.23 -0.43 -13.57 16 8 C -0.24 -5.91 9.76 -15.06 -0.15 -6.06 16 9 H 0.08 1.85 7.83 -52.48 -0.41 1.44 16 10 C -0.01 -0.19 5.19 -17.43 -0.09 -0.28 16 11 N -0.91 -24.02 7.27 55.49 0.40 -23.62 16 12 Si 0.91 20.93 29.55 -169.99 -5.02 15.91 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 C 0.13 2.33 5.33 -4.04 -0.02 2.31 16 17 C 0.12 1.89 2.98 -27.88 -0.08 1.81 16 18 H 0.12 2.18 7.12 -51.93 -0.37 1.81 16 19 O -0.54 -9.08 11.62 -35.23 -0.41 -9.49 16 20 C -0.10 -1.38 5.07 -104.58 -0.53 -1.91 16 21 C -0.08 -0.86 9.30 -39.60 -0.37 -1.23 16 22 C -0.14 -1.49 10.03 -39.51 -0.40 -1.89 16 23 C 0.10 1.10 7.30 -39.43 -0.29 0.81 16 24 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 25 C -0.14 -1.68 9.81 -39.48 -0.39 -2.07 16 26 C -0.01 -0.10 6.31 -39.51 -0.25 -0.34 16 27 Cl -0.04 -0.61 27.16 -51.86 -1.41 -2.02 16 28 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.74 8.13 -51.93 -0.42 0.31 16 31 H 0.14 3.29 6.01 -51.93 -0.31 2.98 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.01 0.30 6.80 -51.93 -0.35 -0.05 16 34 H 0.11 3.12 5.70 -51.93 -0.30 2.82 16 35 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.06 1.12 7.78 -51.93 -0.40 0.72 16 37 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.36 4.74 7.08 45.56 0.32 5.06 16 39 H 0.14 1.28 6.40 -52.48 -0.34 0.94 16 40 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 41 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -28.87 361.55 -7.71 -36.59 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.25 Total: 7.13 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.37 Total: 5.09 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.03 Total: -37.19 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.12 Total: -29.41 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.41 Total: -2.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.87 -7.71 -36.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.920 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds