Wall clock time and date at job start Wed Apr 1 2020 03:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 116.99898 * 2 1 4 4 O 1.20830 * 120.00096 * 359.97438 * 3 2 1 5 5 C 1.50691 * 119.99823 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47300 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47464 * 185.82926 * 6 5 3 8 8 C 1.36939 * 119.99702 * 82.70896 * 7 6 5 9 9 H 1.08006 * 119.99758 * 171.08637 * 8 7 6 10 10 C 1.38807 * 120.00617 * 351.09154 * 8 7 6 11 11 N 1.31624 * 119.99628 * 1.67557 * 10 8 7 12 12 Si 1.86798 * 120.00260 * 181.68095 * 10 8 7 13 13 H 1.48505 * 109.46909 * 89.99669 * 12 10 8 14 14 H 1.48505 * 109.46983 * 209.99529 * 12 10 8 15 15 H 1.48494 * 109.47064 * 329.99941 * 12 10 8 16 16 C 1.46502 * 119.99965 * 262.70985 * 7 6 5 17 17 C 1.53000 * 109.46874 * 273.13607 * 16 7 6 18 18 H 1.08995 * 109.47281 * 301.75671 * 17 16 7 19 19 O 1.42898 * 109.47129 * 61.76322 * 17 16 7 20 20 C 1.50706 * 109.46516 * 181.75971 * 17 16 7 21 21 C 1.38245 * 119.97870 * 265.02194 * 20 17 16 22 22 C 1.38179 * 120.03731 * 179.97438 * 21 20 17 23 23 C 1.38488 * 120.00264 * 359.97438 * 22 21 20 24 24 F 1.35097 * 120.02043 * 179.97438 * 23 22 21 25 25 C 1.38412 * 119.96068 * 0.02562 * 23 22 21 26 26 C 1.38338 * 119.98144 * 85.00208 * 20 17 16 27 27 Cl 1.73596 * 120.00181 * 359.97438 * 26 20 17 28 28 H 1.09003 * 109.47064 * 60.00261 * 1 2 3 29 29 H 1.09003 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47163 * 300.00503 * 1 2 3 31 31 H 1.09001 * 109.47457 * 60.00186 * 5 3 2 32 32 H 1.09000 * 109.47580 * 299.99880 * 5 3 2 33 33 H 1.08998 * 109.47429 * 65.82297 * 6 5 3 34 34 H 1.09004 * 109.47044 * 305.82587 * 6 5 3 35 35 H 0.96998 * 120.00095 * 180.02562 * 11 10 8 36 36 H 1.08999 * 109.46896 * 153.13333 * 16 7 6 37 37 H 1.09003 * 109.46764 * 33.13493 * 16 7 6 38 38 H 0.96691 * 114.00357 * 59.99464 * 19 17 16 39 39 H 1.08006 * 119.98059 * 359.97438 * 21 20 17 40 40 H 1.08005 * 120.00164 * 180.27232 * 22 21 20 41 41 H 1.08003 * 120.02388 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 0.0002 7 7 5.4562 2.8209 -0.1407 8 6 6.0293 2.7421 -1.3819 9 1 7.0834 2.9432 -1.5037 10 6 5.2554 2.4040 -2.4835 11 7 3.9644 2.1914 -2.3405 12 14 6.0462 2.2507 -4.1689 13 1 6.5058 0.8536 -4.3747 14 1 5.0538 2.6046 -5.2154 15 1 7.2077 3.1718 -4.2563 16 6 6.2992 2.9839 1.0464 17 6 6.4380 4.4722 1.3728 18 1 6.8667 4.9935 0.5169 19 8 5.1503 5.0175 1.6666 20 6 7.3402 4.6423 2.5679 21 6 6.7961 4.7527 3.8340 22 6 7.6221 4.9082 4.9307 23 6 8.9960 4.9528 4.7621 24 9 9.8040 5.1053 5.8340 25 6 9.5408 4.8423 3.4945 26 6 8.7123 4.6874 2.3975 27 17 9.3945 4.5474 0.8073 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 3.7000 3.2093 0.9381 34 1 3.5260 3.2616 -0.8325 35 1 3.4236 1.9547 -3.1102 36 1 7.2849 2.5608 0.8528 37 1 5.8417 2.4679 1.8905 38 1 4.7088 4.6004 2.4189 39 1 5.7247 4.7175 3.9659 40 1 7.1967 4.9900 5.9200 41 1 10.6120 4.8774 3.3617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:46 Heat of formation + Delta-G solvation = -141.444307 kcal Electronic energy + Delta-G solvation = -28247.341791 eV Core-core repulsion = 23875.654004 eV Total energy + Delta-G solvation = -4371.687787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.97532 -41.17338 -40.75525 -38.54479 -37.52406 -37.33016 -36.72563 -33.34848 -32.52122 -31.98930 -31.72600 -28.78574 -28.32137 -26.17528 -24.79734 -24.10278 -22.84028 -22.08737 -21.27507 -19.14818 -18.88162 -18.25622 -17.84464 -17.68628 -17.35342 -17.14188 -16.76165 -16.66691 -16.25214 -15.84493 -15.73222 -15.43482 -14.97489 -14.79015 -14.55417 -14.34794 -14.21363 -13.96328 -13.76298 -13.36348 -13.15480 -12.91459 -12.81703 -12.61482 -12.52272 -12.37845 -12.30006 -12.19515 -11.91260 -11.78533 -11.73922 -11.64297 -11.58696 -11.17635 -11.09255 -10.34242 -10.03530 -9.65652 -8.71700 -7.61889 -5.12550 -0.08496 0.02832 1.03644 1.50412 1.53344 1.54853 1.59260 2.09924 2.35826 2.56724 3.15311 3.39403 3.49455 3.53255 3.70211 3.92644 3.93490 4.16930 4.35080 4.35961 4.39539 4.40976 4.43884 4.49687 4.66738 4.75916 4.80965 4.86965 4.93642 4.97391 5.03852 5.07593 5.16649 5.40274 5.52639 5.64834 5.68356 5.97984 6.02235 6.49325 6.90689 7.08256 7.27811 7.95983 8.32499 9.26126 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.003591 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.383307 B = 7794.660675 C = 9819.286459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.479 3.521 4 O -0.545 6.545 5 C -0.098 4.098 6 C 0.202 3.798 7 N -0.600 5.600 8 C -0.236 4.236 9 H 0.076 0.924 10 C -0.054 4.054 11 N -0.924 5.924 12 Si 0.959 3.041 13 H -0.287 1.287 14 H -0.303 1.303 15 H -0.279 1.279 16 C 0.130 3.870 17 C 0.131 3.869 18 H 0.087 0.913 19 O -0.557 6.557 20 C -0.116 4.116 21 C -0.071 4.071 22 C -0.134 4.134 23 C 0.097 3.903 24 F -0.137 7.137 25 C -0.146 4.146 26 C -0.016 4.016 27 Cl -0.060 7.060 28 H 0.048 0.952 29 H 0.130 0.870 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.238 0.762 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.378 0.622 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 0.362 14.997 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C 0.324 3.676 4 O -0.435 6.435 5 C -0.138 4.138 6 C 0.077 3.923 7 N -0.320 5.320 8 C -0.366 4.366 9 H 0.094 0.906 10 C -0.246 4.246 11 N -0.574 5.574 12 Si 0.790 3.210 13 H -0.215 1.215 14 H -0.230 1.230 15 H -0.204 1.204 16 C 0.002 3.998 17 C 0.069 3.931 18 H 0.104 0.896 19 O -0.364 6.364 20 C -0.118 4.118 21 C -0.089 4.089 22 C -0.152 4.152 23 C 0.077 3.923 24 F -0.116 7.116 25 C -0.165 4.165 26 C -0.044 4.044 27 Cl -0.031 7.031 28 H 0.067 0.933 29 H 0.148 0.852 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.227 0.773 39 H 0.182 0.818 40 H 0.188 0.812 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.561 0.978 14.234 14.979 hybrid contribution 0.298 -0.319 -0.943 1.039 sum 4.860 0.659 13.291 14.166 Atomic orbital electron populations 1.23421 0.75924 1.05134 1.01946 1.86535 1.24431 1.34075 1.84446 1.24377 0.92823 0.80491 0.69880 1.90535 1.68071 1.37357 1.47548 1.22334 0.84613 1.03521 1.03359 1.20486 0.82364 0.91367 0.98125 1.44137 1.02007 1.83795 1.02033 1.19574 0.93877 1.37790 0.85361 0.90647 1.25346 0.96371 1.02341 1.00581 1.70401 1.04677 1.54471 1.27882 0.85368 0.77048 0.77532 0.81051 1.21458 1.23042 1.20424 1.21505 0.95689 0.92937 0.89621 1.21537 0.81671 0.97234 0.92667 0.89565 1.86691 1.31359 1.63318 1.55019 1.20701 0.92781 1.00786 0.97502 1.20999 1.01808 0.96708 0.89419 1.21482 0.90802 1.01171 1.01783 1.17555 0.88810 1.03105 0.82785 1.91514 1.73117 1.93140 1.53790 1.21048 1.01718 1.03811 0.89938 1.20526 0.92661 1.04286 0.86883 1.98413 1.84834 1.96083 1.23752 0.93263 0.85174 0.91862 0.87297 0.90631 0.95532 0.91225 0.95109 0.92204 0.91898 0.77283 0.81793 0.81233 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.38 -13.81 10.57 -51.43 -0.54 -14.35 16 3 C 0.48 20.36 7.96 71.23 0.57 20.92 16 4 O -0.55 -25.63 15.65 21.95 0.34 -25.28 16 5 C -0.10 -4.26 5.20 29.85 0.16 -4.11 16 6 C 0.20 9.36 4.03 86.38 0.35 9.71 16 7 N -0.60 -26.96 2.51 -701.99 -1.76 -28.72 16 8 C -0.24 -11.89 9.76 84.03 0.82 -11.07 16 9 H 0.08 3.73 7.83 -2.91 -0.02 3.70 16 10 C -0.05 -2.80 5.19 84.86 0.44 -2.36 16 11 N -0.92 -50.34 7.27 21.65 0.16 -50.19 16 12 Si 0.96 44.03 29.55 68.60 2.03 46.06 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 C 0.13 4.56 5.33 86.38 0.46 5.02 16 17 C 0.13 4.21 2.98 29.85 0.09 4.30 16 18 H 0.09 3.29 7.12 -2.39 -0.02 3.28 16 19 O -0.56 -18.12 11.62 -148.98 -1.73 -19.86 16 20 C -0.12 -2.93 5.07 -19.84 -0.10 -3.03 16 21 C -0.07 -1.36 9.30 22.26 0.21 -1.15 16 22 C -0.13 -2.24 10.03 22.32 0.22 -2.01 16 23 C 0.10 1.91 7.30 22.37 0.16 2.07 16 24 F -0.14 -2.73 17.27 44.97 0.78 -1.96 16 25 C -0.15 -3.10 9.81 22.34 0.22 -2.88 16 26 C -0.02 -0.41 6.31 22.32 0.14 -0.27 16 27 Cl -0.06 -1.67 27.16 -2.72 -0.07 -1.74 16 28 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 29 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 31 H 0.11 5.41 6.01 -2.39 -0.01 5.40 16 32 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.03 1.13 6.80 -2.39 -0.02 1.12 16 34 H 0.07 3.91 5.70 -2.38 -0.01 3.90 16 35 H 0.24 13.18 8.31 -92.71 -0.77 12.41 16 36 H 0.06 2.13 7.78 -2.39 -0.02 2.11 16 37 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 38 H 0.38 9.06 7.08 -74.06 -0.52 8.54 16 39 H 0.16 2.32 6.40 -2.91 -0.02 2.30 16 40 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -63.87 361.55 4.69 -59.18 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.56 Total: 19.73 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 4.93 Total: 17.13 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -1.60 Total: -78.91 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -1.93 Total: -59.49 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.07 Total: -1.74 kcal Total: -63.87 4.69 -59.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.264 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds