Wall clock time and date at job start Wed Apr 1 2020 03:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34232 * 116.99789 * 2 1 4 4 O 1.20822 * 119.99992 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00100 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47374 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47349 * 179.97438 * 6 5 3 8 8 C 1.36944 * 119.99710 * 269.99960 * 7 6 5 9 9 H 1.07999 * 119.99690 * 324.09971 * 8 7 6 10 10 C 1.38806 * 119.99756 * 144.10526 * 8 7 6 11 11 N 1.31616 * 120.00176 * 337.96730 * 10 8 7 12 12 Si 1.86805 * 119.99861 * 157.96984 * 10 8 7 13 13 H 1.48497 * 109.46996 * 59.99879 * 12 10 8 14 14 H 1.48503 * 109.46866 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47241 * 299.99502 * 12 10 8 16 16 C 1.46501 * 120.00270 * 89.99879 * 7 6 5 17 17 C 1.52997 * 109.46867 * 84.27978 * 16 7 6 18 18 H 1.08992 * 109.47378 * 54.79743 * 17 16 7 19 19 O 1.42903 * 109.47052 * 294.79164 * 17 16 7 20 20 C 1.50707 * 109.47078 * 174.80050 * 17 16 7 21 21 C 1.38242 * 119.98370 * 94.49981 * 20 17 16 22 22 C 1.38177 * 120.03729 * 180.02562 * 21 20 17 23 23 C 1.38485 * 120.00616 * 0.02562 * 22 21 20 24 24 F 1.35093 * 120.02593 * 180.02562 * 23 22 21 25 25 C 1.38416 * 119.95898 * 359.97438 * 23 22 21 26 26 C 1.38340 * 119.96367 * 0.02562 * 25 23 22 27 27 Cl 1.73591 * 120.00461 * 179.97438 * 26 25 23 28 28 H 1.08998 * 109.46456 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47304 * 300.00699 * 1 2 3 30 30 H 1.08999 * 109.46668 * 60.01099 * 1 2 3 31 31 H 1.09003 * 109.47402 * 59.99135 * 5 3 2 32 32 H 1.09004 * 109.46891 * 299.99690 * 5 3 2 33 33 H 1.09003 * 109.47217 * 59.99445 * 6 5 3 34 34 H 1.09004 * 109.47204 * 299.99921 * 6 5 3 35 35 H 0.97007 * 119.99909 * 185.26057 * 11 10 8 36 36 H 1.08995 * 109.47009 * 324.27688 * 16 7 6 37 37 H 1.09002 * 109.47038 * 204.27961 * 16 7 6 38 38 H 0.96694 * 114.00509 * 300.00308 * 19 17 16 39 39 H 1.08004 * 119.98099 * 0.02878 * 21 20 17 40 40 H 1.08003 * 120.00010 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.02278 * 179.72135 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 7 5.4631 2.8189 -0.0011 8 6 6.1467 2.8553 1.1850 9 1 5.7322 3.3830 2.0312 10 6 7.3723 2.2138 1.2994 11 7 7.6843 1.2382 0.4729 12 14 8.5790 2.7352 2.6267 13 1 7.9542 2.5559 3.9618 14 1 9.8039 1.9002 2.5378 15 1 8.9381 4.1634 2.4359 16 6 6.1947 2.8568 -1.2697 17 6 6.2498 4.2968 -1.7838 18 1 6.6748 4.9412 -1.0144 19 8 4.9288 4.7404 -2.1006 20 6 7.1095 4.3562 -3.0201 21 6 6.5275 4.2707 -4.2711 22 6 7.3147 4.3246 -5.4054 23 6 8.6877 4.4638 -5.2896 24 9 9.4577 4.5170 -6.3983 25 6 9.2705 4.5494 -4.0370 26 6 8.4810 4.4953 -2.9024 27 17 9.2109 4.6019 -1.3310 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 3.9558 0.7809 -0.8908 32 1 3.9564 0.7807 0.8892 33 1 3.6106 3.2366 0.8889 34 1 3.6100 3.2361 -0.8911 35 1 8.5065 0.7393 0.5997 36 1 5.6861 2.2290 -2.0013 37 1 7.2084 2.4869 -1.1157 38 1 4.4886 4.2115 -2.7799 39 1 5.4568 4.1618 -4.3619 40 1 6.8593 4.2581 -6.3825 41 1 10.3416 4.6535 -3.9454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879474500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:50 Heat of formation + Delta-G solvation = -142.697827 kcal Electronic energy + Delta-G solvation = -28296.046691 eV Core-core repulsion = 23924.304547 eV Total energy + Delta-G solvation = -4371.742144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.93997 -40.03659 -39.53966 -37.05293 -36.23361 -36.13711 -35.03023 -32.09299 -31.29705 -30.91079 -29.94719 -27.71509 -26.94811 -24.58319 -23.50815 -23.00330 -21.44068 -20.75411 -19.77661 -18.01374 -17.32931 -17.08795 -16.69847 -16.29359 -16.18396 -15.96048 -15.64960 -15.07141 -14.88437 -14.53071 -14.18151 -14.02820 -13.81763 -13.59805 -13.30238 -13.19515 -12.94893 -12.67640 -12.54889 -12.10213 -12.03344 -11.49629 -11.36947 -11.26415 -11.18930 -10.98791 -10.85897 -10.57543 -10.56010 -10.44418 -10.33084 -10.18893 -9.99964 -9.93181 -9.50587 -8.93850 -8.60859 -8.43009 -6.68515 -5.93631 -3.43666 1.04091 1.10215 2.29700 2.64729 3.10892 3.30385 3.36782 3.40353 3.46170 4.22347 4.38364 4.68145 4.79725 4.83797 4.91500 5.19646 5.21911 5.24986 5.26621 5.31225 5.48905 5.56740 5.68092 5.84476 5.86984 5.94000 5.95682 6.03996 6.10702 6.25968 6.33779 6.41290 6.69077 6.72510 6.77496 6.90702 7.04433 7.40048 7.75933 8.09912 8.15909 8.40495 9.05973 9.68066 10.25122 11.09782 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.004140 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.223649 B = 6762.179772 C = 9040.559660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.367 6.367 3 C 0.461 3.539 4 O -0.517 6.517 5 C -0.132 4.132 6 C 0.162 3.838 7 N -0.567 5.567 8 C -0.268 4.268 9 H 0.064 0.936 10 C 0.026 3.974 11 N -0.883 5.883 12 Si 0.885 3.115 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.279 1.279 16 C 0.127 3.873 17 C 0.114 3.886 18 H 0.117 0.883 19 O -0.550 6.550 20 C -0.098 4.098 21 C -0.080 4.080 22 C -0.147 4.147 23 C 0.095 3.905 24 F -0.139 7.139 25 C -0.146 4.146 26 C -0.004 4.004 27 Cl -0.036 7.036 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.259 0.741 36 H 0.027 0.973 37 H 0.115 0.885 38 H 0.359 0.641 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 1.418 -9.402 10.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.284 6.284 3 C 0.305 3.695 4 O -0.405 6.405 5 C -0.172 4.172 6 C 0.035 3.965 7 N -0.284 5.284 8 C -0.398 4.398 9 H 0.081 0.919 10 C -0.175 4.175 11 N -0.524 5.524 12 Si 0.714 3.286 13 H -0.205 1.205 14 H -0.214 1.214 15 H -0.206 1.206 16 C -0.001 4.001 17 C 0.053 3.947 18 H 0.134 0.866 19 O -0.355 6.355 20 C -0.100 4.100 21 C -0.098 4.098 22 C -0.166 4.166 23 C 0.075 3.925 24 F -0.118 7.118 25 C -0.165 4.165 26 C -0.031 4.031 27 Cl -0.007 7.007 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.133 0.867 38 H 0.206 0.794 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.142 2.097 -8.851 9.623 hybrid contribution 0.698 -0.354 0.139 0.795 sum -2.444 1.743 -8.712 9.215 Atomic orbital electron populations 1.23146 0.77774 1.02952 1.02113 1.86605 1.22482 1.34844 1.84452 1.24707 0.92967 0.80679 0.71147 1.90610 1.67564 1.36354 1.45978 1.22487 0.83912 1.05244 1.05596 1.20850 0.85249 0.89636 1.00748 1.43690 0.99532 1.83207 1.02002 1.19055 1.01343 1.28318 0.91051 0.91866 1.25060 0.99769 0.95274 0.97438 1.69849 1.25309 1.18964 1.38325 0.86627 0.81089 0.78708 0.82140 1.20545 1.21438 1.20560 1.21599 1.02111 0.89628 0.86723 1.22150 0.80156 1.01786 0.90590 0.86591 1.86669 1.28616 1.58626 1.61575 1.20913 0.93187 0.98162 0.97737 1.20694 1.00297 0.98447 0.90349 1.21123 0.91729 1.03472 1.00309 1.17391 0.88858 1.04098 0.82107 1.91490 1.75276 1.94033 1.51005 1.20933 1.01101 1.04512 0.89974 1.20502 0.92549 1.02621 0.87464 1.98438 1.82515 1.96024 1.23724 0.88770 0.92295 0.92341 0.88823 0.87563 0.92914 0.92736 0.93118 0.95425 0.86719 0.79416 0.84331 0.84453 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.67 10.57 -39.26 -0.41 -6.08 16 3 C 0.46 7.99 7.96 36.00 0.29 8.28 16 4 O -0.52 -9.92 15.73 -18.75 -0.29 -10.21 16 5 C -0.13 -2.40 6.13 -27.89 -0.17 -2.57 16 6 C 0.16 3.26 4.78 -4.04 -0.02 3.24 16 7 N -0.57 -12.66 2.43 -173.24 -0.42 -13.08 16 8 C -0.27 -6.70 9.47 -15.06 -0.14 -6.84 16 9 H 0.06 1.62 7.92 -52.49 -0.42 1.21 16 10 C 0.03 0.65 4.90 -17.43 -0.09 0.57 16 11 N -0.88 -22.81 11.47 55.49 0.64 -22.18 16 12 Si 0.89 20.45 29.61 -169.99 -5.03 15.42 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.13 2.61 4.92 -4.04 -0.02 2.59 16 17 C 0.11 2.07 2.97 -27.88 -0.08 1.99 16 18 H 0.12 2.39 7.10 -51.93 -0.37 2.03 16 19 O -0.55 -9.27 11.36 -35.23 -0.40 -9.67 16 20 C -0.10 -1.54 5.07 -104.58 -0.53 -2.07 16 21 C -0.08 -1.02 9.30 -39.60 -0.37 -1.39 16 22 C -0.15 -1.76 10.03 -39.51 -0.40 -2.16 16 23 C 0.10 1.26 7.30 -39.42 -0.29 0.97 16 24 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 25 C -0.15 -2.04 9.81 -39.48 -0.39 -2.43 16 26 C 0.00 -0.06 6.31 -39.50 -0.25 -0.31 16 27 Cl -0.04 -0.64 27.25 -51.86 -1.41 -2.05 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 33 H 0.05 1.12 8.00 -51.93 -0.42 0.71 16 34 H 0.05 1.04 6.52 -51.93 -0.34 0.70 16 35 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 36 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 37 H 0.12 2.66 5.36 -51.93 -0.28 2.38 16 38 H 0.36 4.72 7.24 45.56 0.33 5.05 16 39 H 0.14 1.42 6.41 -52.48 -0.34 1.09 16 40 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -28.28 368.31 -7.48 -35.75 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.34 Total: 7.03 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.39 Total: 1.31 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.22 Total: -35.25 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.11 Total: -25.97 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.41 Total: -2.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.28 -7.48 -35.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.944 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds