Wall clock time and date at job start Wed Apr 1 2020 03:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34232 * 116.99789 * 2 1 4 4 O 1.20822 * 119.99992 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00100 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47374 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47349 * 179.97438 * 6 5 3 8 8 C 1.36944 * 119.99710 * 269.99960 * 7 6 5 9 9 H 1.07999 * 119.99690 * 324.09971 * 8 7 6 10 10 C 1.38806 * 119.99756 * 144.10526 * 8 7 6 11 11 N 1.31616 * 120.00176 * 337.96730 * 10 8 7 12 12 Si 1.86805 * 119.99861 * 157.96984 * 10 8 7 13 13 H 1.48497 * 109.46996 * 59.99879 * 12 10 8 14 14 H 1.48503 * 109.46866 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47241 * 299.99502 * 12 10 8 16 16 C 1.46501 * 120.00270 * 89.99879 * 7 6 5 17 17 C 1.52997 * 109.46867 * 84.27978 * 16 7 6 18 18 H 1.08992 * 109.47378 * 54.79743 * 17 16 7 19 19 O 1.42903 * 109.47052 * 294.79164 * 17 16 7 20 20 C 1.50707 * 109.47078 * 174.80050 * 17 16 7 21 21 C 1.38242 * 119.98370 * 94.49981 * 20 17 16 22 22 C 1.38177 * 120.03729 * 180.02562 * 21 20 17 23 23 C 1.38485 * 120.00616 * 0.02562 * 22 21 20 24 24 F 1.35093 * 120.02593 * 180.02562 * 23 22 21 25 25 C 1.38416 * 119.95898 * 359.97438 * 23 22 21 26 26 C 1.38340 * 119.96367 * 0.02562 * 25 23 22 27 27 Cl 1.73591 * 120.00461 * 179.97438 * 26 25 23 28 28 H 1.08998 * 109.46456 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47304 * 300.00699 * 1 2 3 30 30 H 1.08999 * 109.46668 * 60.01099 * 1 2 3 31 31 H 1.09003 * 109.47402 * 59.99135 * 5 3 2 32 32 H 1.09004 * 109.46891 * 299.99690 * 5 3 2 33 33 H 1.09003 * 109.47217 * 59.99445 * 6 5 3 34 34 H 1.09004 * 109.47204 * 299.99921 * 6 5 3 35 35 H 0.97007 * 119.99909 * 185.26057 * 11 10 8 36 36 H 1.08995 * 109.47009 * 324.27688 * 16 7 6 37 37 H 1.09002 * 109.47038 * 204.27961 * 16 7 6 38 38 H 0.96694 * 114.00509 * 300.00308 * 19 17 16 39 39 H 1.08004 * 119.98099 * 0.02878 * 21 20 17 40 40 H 1.08003 * 120.00010 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.02278 * 179.72135 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 7 5.4631 2.8189 -0.0011 8 6 6.1467 2.8553 1.1850 9 1 5.7322 3.3830 2.0312 10 6 7.3723 2.2138 1.2994 11 7 7.6843 1.2382 0.4729 12 14 8.5790 2.7352 2.6267 13 1 7.9542 2.5559 3.9618 14 1 9.8039 1.9002 2.5378 15 1 8.9381 4.1634 2.4359 16 6 6.1947 2.8568 -1.2697 17 6 6.2498 4.2968 -1.7838 18 1 6.6748 4.9412 -1.0144 19 8 4.9288 4.7404 -2.1006 20 6 7.1095 4.3562 -3.0201 21 6 6.5275 4.2707 -4.2711 22 6 7.3147 4.3246 -5.4054 23 6 8.6877 4.4638 -5.2896 24 9 9.4577 4.5170 -6.3983 25 6 9.2705 4.5494 -4.0370 26 6 8.4810 4.4953 -2.9024 27 17 9.2109 4.6019 -1.3310 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8901 31 1 3.9558 0.7809 -0.8908 32 1 3.9564 0.7807 0.8892 33 1 3.6106 3.2366 0.8889 34 1 3.6100 3.2361 -0.8911 35 1 8.5065 0.7393 0.5997 36 1 5.6861 2.2290 -2.0013 37 1 7.2084 2.4869 -1.1157 38 1 4.4886 4.2115 -2.7799 39 1 5.4568 4.1618 -4.3619 40 1 6.8593 4.2581 -6.3825 41 1 10.3416 4.6535 -3.9454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:49 Heat of formation + Delta-G solvation = -157.918306 kcal Electronic energy + Delta-G solvation = -28296.706700 eV Core-core repulsion = 23924.304547 eV Total energy + Delta-G solvation = -4372.402153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.97858 -41.38162 -40.72578 -38.48081 -37.53457 -37.40560 -36.59203 -33.85250 -32.63146 -31.98092 -31.45384 -28.94518 -28.32288 -26.24732 -24.86041 -24.09219 -22.86170 -22.11786 -21.28131 -19.19882 -18.83583 -18.48903 -17.84726 -17.61425 -17.50281 -17.31193 -16.74981 -16.68465 -16.14385 -15.89635 -15.65141 -15.53700 -14.97495 -14.94807 -14.66433 -14.35288 -14.20104 -14.10473 -13.77931 -13.61163 -13.27588 -13.10145 -12.80497 -12.70394 -12.55696 -12.36742 -12.30204 -12.21254 -12.16168 -11.90177 -11.77037 -11.69870 -11.58925 -11.42204 -10.98219 -10.50152 -10.02485 -9.61485 -8.49067 -7.84149 -5.36025 -0.06266 0.03491 1.07783 1.26060 1.43472 1.47812 1.51292 1.88461 2.37075 2.51139 3.15301 3.27111 3.51324 3.55382 3.70408 3.92235 3.92819 4.15307 4.18515 4.30904 4.36316 4.38752 4.42732 4.44401 4.52974 4.67100 4.73950 4.84329 4.87129 4.89000 5.06821 5.09202 5.14541 5.33000 5.45410 5.51364 5.69757 5.70882 5.79536 6.50427 6.82581 6.91662 7.20434 7.86703 8.39207 9.15077 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.004140 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.223649 B = 6762.179772 C = 9040.559660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.121 4.121 6 C 0.168 3.832 7 N -0.580 5.580 8 C -0.273 4.273 9 H 0.048 0.952 10 C 0.000 4.000 11 N -0.897 5.897 12 Si 0.920 3.080 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.283 1.283 16 C 0.130 3.870 17 C 0.133 3.867 18 H 0.084 0.916 19 O -0.557 6.557 20 C -0.116 4.116 21 C -0.071 4.071 22 C -0.133 4.133 23 C 0.096 3.904 24 F -0.136 7.136 25 C -0.150 4.150 26 C -0.019 4.019 27 Cl -0.064 7.064 28 H 0.130 0.870 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.066 0.934 35 H 0.254 0.746 36 H 0.037 0.963 37 H 0.091 0.909 38 H 0.378 0.622 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.677 1.042 -11.657 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.161 4.161 6 C 0.041 3.959 7 N -0.298 5.298 8 C -0.403 4.403 9 H 0.066 0.934 10 C -0.199 4.199 11 N -0.540 5.540 12 Si 0.749 3.251 13 H -0.204 1.204 14 H -0.216 1.216 15 H -0.209 1.209 16 C 0.004 3.996 17 C 0.072 3.928 18 H 0.102 0.898 19 O -0.364 6.364 20 C -0.118 4.118 21 C -0.089 4.089 22 C -0.152 4.152 23 C 0.077 3.923 24 F -0.115 7.115 25 C -0.170 4.170 26 C -0.046 4.046 27 Cl -0.034 7.034 28 H 0.148 0.852 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.108 0.892 38 H 0.227 0.773 39 H 0.186 0.814 40 H 0.191 0.809 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.493 1.710 -11.126 12.120 hybrid contribution 1.004 -0.237 0.721 1.259 sum -3.489 1.473 -10.405 11.073 Atomic orbital electron populations 1.23526 0.75159 1.05499 1.02466 1.86561 1.24948 1.33371 1.83842 1.24252 0.92420 0.80981 0.70718 1.90604 1.67888 1.37134 1.47082 1.22157 0.85123 1.03652 1.05194 1.20740 0.84063 0.90763 1.00334 1.43777 1.00319 1.83871 1.01857 1.19071 1.01810 1.27693 0.91747 0.93395 1.25339 1.00462 0.95466 0.98660 1.69927 1.25239 1.19648 1.39205 0.86073 0.79901 0.78107 0.80987 1.20409 1.21639 1.20901 1.21516 1.00566 0.91382 0.86184 1.21535 0.81061 0.99107 0.91142 0.89779 1.86630 1.28186 1.59035 1.62540 1.20783 0.92790 1.00250 0.97970 1.21015 1.01874 0.96895 0.89161 1.21486 0.90942 1.01173 1.01578 1.17523 0.89555 1.03533 0.81732 1.91505 1.75374 1.93940 1.50681 1.21038 1.01669 1.04377 0.89883 1.20608 0.92938 1.04242 0.86811 1.98424 1.82938 1.96291 1.25792 0.85196 0.92281 0.91718 0.88059 0.89174 0.94838 0.91541 0.93659 0.94425 0.89158 0.77305 0.81370 0.80875 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.37 -10.77 10.57 -51.44 -0.54 -11.31 16 3 C 0.47 15.84 7.96 71.23 0.57 16.41 16 4 O -0.54 -20.04 15.73 21.98 0.35 -19.69 16 5 C -0.12 -4.36 6.13 29.85 0.18 -4.18 16 6 C 0.17 6.73 4.78 86.38 0.41 7.15 16 7 N -0.58 -26.22 2.43 -702.01 -1.71 -27.92 16 8 C -0.27 -13.99 9.47 84.03 0.80 -13.20 16 9 H 0.05 2.56 7.92 -2.91 -0.02 2.53 16 10 C 0.00 0.02 4.90 84.86 0.42 0.44 16 11 N -0.90 -47.18 11.47 21.65 0.25 -46.93 16 12 Si 0.92 42.73 29.61 68.60 2.03 44.77 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 14 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 16 C 0.13 5.36 4.92 86.38 0.43 5.78 16 17 C 0.13 4.78 2.97 29.85 0.09 4.87 16 18 H 0.08 3.58 7.10 -2.39 -0.02 3.56 16 19 O -0.56 -17.95 11.36 -148.98 -1.69 -19.64 16 20 C -0.12 -3.52 5.07 -19.84 -0.10 -3.62 16 21 C -0.07 -1.60 9.30 22.26 0.21 -1.40 16 22 C -0.13 -2.66 10.03 22.31 0.22 -2.44 16 23 C 0.10 2.28 7.30 22.37 0.16 2.44 16 24 F -0.14 -3.18 17.27 44.97 0.78 -2.40 16 25 C -0.15 -4.03 9.81 22.34 0.22 -3.81 16 26 C -0.02 -0.60 6.31 22.32 0.14 -0.46 16 27 Cl -0.06 -2.31 27.25 -2.72 -0.07 -2.38 16 28 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.03 1.45 8.00 -2.39 -0.02 1.43 16 34 H 0.07 2.48 6.52 -2.39 -0.02 2.46 16 35 H 0.25 13.22 8.32 -92.70 -0.77 12.45 16 36 H 0.04 1.43 8.11 -2.39 -0.02 1.41 16 37 H 0.09 4.26 5.36 -2.39 -0.01 4.24 16 38 H 0.38 8.85 7.24 -74.06 -0.54 8.32 16 39 H 0.17 2.71 6.41 -2.91 -0.02 2.69 16 40 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 41 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -61.79 368.31 4.87 -56.92 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.54 Total: 18.85 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.94 Total: 9.73 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.46 Total: -74.85 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -1.89 Total: -50.64 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.07 Total: -2.38 kcal Total: -61.79 4.87 -56.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.000 kcal (2) G-P(sol) polarization free energy of solvation -61.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds