Wall clock time and date at job start Wed Apr 1 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81395 * 109.47564 * 2 1 4 4 O 1.42105 * 109.46783 * 296.39088 * 3 2 1 5 5 C 1.81398 * 103.00371 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47202 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47360 * 179.97438 * 6 5 3 8 8 S 1.65593 * 120.00263 * 164.99905 * 7 6 5 9 9 O 1.42105 * 106.40453 * 178.54444 * 8 7 6 10 10 O 1.42100 * 106.40022 * 311.46024 * 8 7 6 11 11 C 1.76195 * 107.22124 * 65.00134 * 8 7 6 12 12 C 1.38240 * 119.99762 * 269.72836 * 11 8 7 13 13 C 1.38240 * 119.99837 * 179.76242 * 12 11 8 14 14 C 1.38243 * 119.99535 * 0.50742 * 13 12 11 15 15 C 1.50705 * 119.99605 * 179.72326 * 14 13 12 16 16 C 1.50700 * 109.47157 * 270.02390 * 15 14 13 17 17 H 1.08009 * 119.99695 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00306 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99699 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00182 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47420 * 90.00381 * 20 18 16 22 22 H 1.48507 * 109.47009 * 210.00366 * 20 18 16 23 23 H 1.48502 * 109.47498 * 329.99845 * 20 18 16 24 24 C 1.38231 * 120.00281 * 359.74581 * 14 13 12 25 25 C 1.38233 * 120.00171 * 89.99776 * 11 8 7 26 26 H 1.08999 * 109.47398 * 59.99899 * 1 2 3 27 27 H 1.09001 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46636 * 299.99912 * 1 2 3 29 29 H 1.09007 * 109.47183 * 239.99608 * 2 1 3 30 30 H 1.08998 * 109.47140 * 120.00587 * 2 1 3 31 31 H 1.09010 * 109.46813 * 300.00104 * 5 3 2 32 32 H 1.08993 * 109.47173 * 59.99579 * 5 3 2 33 33 H 1.09000 * 109.47184 * 299.99708 * 6 5 3 34 34 H 1.09004 * 109.47132 * 59.99774 * 6 5 3 35 35 H 0.97005 * 119.99686 * 345.00246 * 7 6 5 36 36 H 1.08002 * 120.00224 * 359.97438 * 12 11 8 37 37 H 1.07995 * 120.00108 * 180.23290 * 13 12 11 38 38 H 1.08999 * 109.46994 * 30.02227 * 15 14 13 39 39 H 1.08999 * 109.47002 * 150.02345 * 15 14 13 40 40 H 0.96991 * 119.99889 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.00088 * 179.97438 * 24 14 13 42 42 H 1.07996 * 120.00132 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7312 2.3552 -1.2002 5 6 3.9372 1.5057 -0.0008 6 6 4.6065 2.8815 -0.0002 7 7 6.0622 2.7164 -0.0002 8 16 7.0411 3.9995 -0.3709 9 8 8.3778 3.5323 -0.2512 10 8 6.5209 4.5694 -1.5642 11 6 6.8206 5.2062 0.8939 12 6 5.8485 6.1797 0.7585 13 6 5.6722 7.1235 1.7531 14 6 6.4751 7.1001 2.8783 15 6 6.2871 8.1328 3.9597 16 6 7.1588 9.3275 3.6704 17 1 7.7860 9.3381 2.7911 18 6 7.1559 10.4070 4.5281 19 7 6.3925 10.3938 5.5990 20 14 8.2370 11.8875 4.1700 21 1 7.4837 12.8613 3.3398 22 1 8.6353 12.5304 5.4480 23 1 9.4517 11.4479 3.4375 24 6 7.4506 6.1298 3.0112 25 6 7.6233 5.1829 2.0190 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.2406 0.9540 0.8891 32 1 4.2399 0.9543 -0.8909 33 1 4.3031 3.4335 -0.8898 34 1 4.3037 3.4325 0.8902 35 1 6.4526 1.8553 0.2168 36 1 5.2244 6.2009 -0.1227 37 1 4.9103 7.8818 1.6491 38 1 5.2426 8.4434 3.9877 39 1 6.5649 7.7049 4.9229 40 1 6.3901 11.1533 6.2022 41 1 8.0781 6.1118 3.8900 42 1 8.3859 4.4252 2.1226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885008816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:49 Heat of formation + Delta-G solvation = -101.456147 kcal Electronic energy + Delta-G solvation = -24913.563203 eV Core-core repulsion = 21111.866315 eV Total energy + Delta-G solvation = -3801.696888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.82223 -37.20842 -36.21072 -36.02668 -35.78372 -33.68850 -33.20725 -31.57117 -30.59386 -30.27700 -27.44322 -24.57828 -23.74108 -22.97174 -22.32373 -20.92272 -19.59146 -18.10188 -17.71819 -17.28894 -16.72434 -16.45276 -15.97387 -15.63797 -15.21250 -15.06442 -14.95525 -14.82051 -14.37770 -14.34798 -13.80391 -13.29993 -13.12961 -13.02197 -12.84041 -12.76259 -12.51551 -12.25265 -12.09542 -12.00386 -11.97520 -11.91634 -11.70996 -11.64515 -11.49585 -10.97207 -10.92010 -10.54656 -10.49300 -10.41466 -9.85429 -9.72037 -9.59626 -8.65752 -8.60824 -8.54472 -8.40344 -6.17956 -4.22806 0.42517 1.04973 1.30302 1.77689 2.16036 3.06294 3.24241 3.30860 3.35172 3.36710 3.73025 4.09291 4.25335 4.37056 4.42617 4.47712 4.50412 4.56731 4.93635 5.04013 5.13631 5.18144 5.23130 5.24283 5.29999 5.34949 5.40073 5.61622 5.64886 5.70980 5.82076 5.89873 6.23004 6.31602 6.49094 6.73876 6.82415 6.89590 7.28000 7.41616 7.57819 7.77320 8.12433 8.81964 9.42262 10.92063 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.002450 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.970938 B =11424.141344 C =12736.364987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.454 4.454 3 S 1.254 4.746 4 O -0.838 6.838 5 C -0.462 4.462 6 C 0.136 3.864 7 N -1.117 6.117 8 S 2.696 3.304 9 O -0.965 6.965 10 O -0.963 6.963 11 C -0.704 4.704 12 C -0.026 4.026 13 C -0.144 4.144 14 C 0.027 3.973 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.146 4.146 25 C -0.021 4.021 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.417 0.583 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.095 -22.347 -5.358 24.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.592 4.592 3 S 1.450 4.550 4 O -0.834 6.834 5 C -0.600 4.600 6 C 0.009 3.991 7 N -0.877 5.877 8 S 2.788 3.212 9 O -0.955 6.955 10 O -0.953 6.953 11 C -0.794 4.794 12 C -0.045 4.045 13 C -0.163 4.163 14 C 0.027 3.973 15 C 0.003 3.997 16 C -0.555 4.555 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.164 4.164 25 C -0.041 4.041 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.251 0.749 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.205 -21.178 -6.022 23.864 hybrid contribution 1.303 -0.451 -1.126 1.780 sum -7.902 -21.629 -7.148 24.111 Atomic orbital electron populations 1.21365 0.91942 1.03143 1.02889 1.27590 1.04078 1.20015 1.07472 1.70930 0.85170 0.86834 1.12090 1.93170 1.75570 1.63642 1.50974 1.27962 1.20741 1.02844 1.08417 1.20815 0.79331 0.95565 1.03404 1.55619 1.15986 1.27143 1.88935 1.01630 0.72536 0.72899 0.74100 1.93570 1.34035 1.80688 1.87250 1.93571 1.80254 1.77931 1.43553 1.30275 1.11104 1.19704 1.18317 1.20821 0.93882 0.92260 0.97580 1.21260 1.01575 0.99335 0.94161 1.21135 0.89173 0.91834 0.95169 1.18542 0.98591 0.91257 0.91348 1.20969 1.24996 1.00234 1.09346 0.92307 1.24998 0.95662 0.98613 0.94868 1.69942 1.38852 1.31264 1.12901 0.86482 0.80787 0.82393 0.77762 1.20440 1.21039 1.19720 1.21251 0.99614 0.95763 0.99817 1.20764 0.94862 0.97300 0.91138 0.92143 0.91601 0.91163 0.89787 0.86379 0.85562 0.88705 0.89697 0.90068 0.74901 0.85188 0.85228 0.94643 0.94681 0.92626 0.85314 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.92 37.16 0.37 -0.28 16 2 C -0.45 -1.98 6.64 37.16 0.25 -1.74 16 3 S 1.25 7.06 13.16 -107.50 -1.41 5.64 16 4 O -0.84 -10.72 18.14 -35.23 -0.64 -11.36 16 5 C -0.46 -2.55 6.06 37.15 0.23 -2.33 16 6 C 0.14 1.16 6.23 -4.04 -0.03 1.13 16 7 N -1.12 -10.52 6.00 -10.61 -0.06 -10.58 16 8 S 2.70 36.98 5.74 -107.50 -0.62 36.37 16 9 O -0.97 -15.34 17.28 -57.17 -0.99 -16.33 16 10 O -0.96 -16.05 16.75 -57.17 -0.96 -17.00 16 11 C -0.70 -10.71 5.95 -39.58 -0.24 -10.94 16 12 C -0.03 -0.41 9.52 -39.58 -0.38 -0.79 16 13 C -0.14 -2.58 9.70 -39.58 -0.38 -2.96 16 14 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 15 C 0.04 0.94 5.10 -29.03 -0.15 0.79 16 16 C -0.52 -13.83 9.09 -34.44 -0.31 -14.14 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 20 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.15 -2.60 9.70 -39.59 -0.38 -2.98 16 25 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 30 H 0.12 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.42 2.83 8.65 -34.47 -0.30 2.54 16 36 H 0.13 1.78 7.61 -52.49 -0.40 1.38 16 37 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.04 0.87 8.09 -51.93 -0.42 0.46 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 42 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -38.54 384.29 -11.31 -49.86 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.11 Total: -0.52 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: -2.03 Total: -33.38 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.67 Total: -35.01 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -2.58 Total: -44.69 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 44.04 SS G_CDS: -2.03 Total: 42.01 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.54 -11.31 -49.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885008816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.600 kcal (2) G-P(sol) polarization free energy of solvation -38.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds