Wall clock time and date at job start Wed Apr 1 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81395 * 109.47564 * 2 1 4 4 O 1.42105 * 109.46783 * 296.39088 * 3 2 1 5 5 C 1.81398 * 103.00371 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47202 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47360 * 179.97438 * 6 5 3 8 8 S 1.65593 * 120.00263 * 164.99905 * 7 6 5 9 9 O 1.42105 * 106.40453 * 178.54444 * 8 7 6 10 10 O 1.42100 * 106.40022 * 311.46024 * 8 7 6 11 11 C 1.76195 * 107.22124 * 65.00134 * 8 7 6 12 12 C 1.38240 * 119.99762 * 269.72836 * 11 8 7 13 13 C 1.38240 * 119.99837 * 179.76242 * 12 11 8 14 14 C 1.38243 * 119.99535 * 0.50742 * 13 12 11 15 15 C 1.50705 * 119.99605 * 179.72326 * 14 13 12 16 16 C 1.50700 * 109.47157 * 270.02390 * 15 14 13 17 17 H 1.08009 * 119.99695 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00306 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99699 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00182 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47420 * 90.00381 * 20 18 16 22 22 H 1.48507 * 109.47009 * 210.00366 * 20 18 16 23 23 H 1.48502 * 109.47498 * 329.99845 * 20 18 16 24 24 C 1.38231 * 120.00281 * 359.74581 * 14 13 12 25 25 C 1.38233 * 120.00171 * 89.99776 * 11 8 7 26 26 H 1.08999 * 109.47398 * 59.99899 * 1 2 3 27 27 H 1.09001 * 109.47393 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46636 * 299.99912 * 1 2 3 29 29 H 1.09007 * 109.47183 * 239.99608 * 2 1 3 30 30 H 1.08998 * 109.47140 * 120.00587 * 2 1 3 31 31 H 1.09010 * 109.46813 * 300.00104 * 5 3 2 32 32 H 1.08993 * 109.47173 * 59.99579 * 5 3 2 33 33 H 1.09000 * 109.47184 * 299.99708 * 6 5 3 34 34 H 1.09004 * 109.47132 * 59.99774 * 6 5 3 35 35 H 0.97005 * 119.99686 * 345.00246 * 7 6 5 36 36 H 1.08002 * 120.00224 * 359.97438 * 12 11 8 37 37 H 1.07995 * 120.00108 * 180.23290 * 13 12 11 38 38 H 1.08999 * 109.46994 * 30.02227 * 15 14 13 39 39 H 1.08999 * 109.47002 * 150.02345 * 15 14 13 40 40 H 0.96991 * 119.99889 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.00088 * 179.97438 * 24 14 13 42 42 H 1.07996 * 120.00132 * 0.02562 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7312 2.3552 -1.2002 5 6 3.9372 1.5057 -0.0008 6 6 4.6065 2.8815 -0.0002 7 7 6.0622 2.7164 -0.0002 8 16 7.0411 3.9995 -0.3709 9 8 8.3778 3.5323 -0.2512 10 8 6.5209 4.5694 -1.5642 11 6 6.8206 5.2062 0.8939 12 6 5.8485 6.1797 0.7585 13 6 5.6722 7.1235 1.7531 14 6 6.4751 7.1001 2.8783 15 6 6.2871 8.1328 3.9597 16 6 7.1588 9.3275 3.6704 17 1 7.7860 9.3381 2.7911 18 6 7.1559 10.4070 4.5281 19 7 6.3925 10.3938 5.5990 20 14 8.2370 11.8875 4.1700 21 1 7.4837 12.8613 3.3398 22 1 8.6353 12.5304 5.4480 23 1 9.4517 11.4479 3.4375 24 6 7.4506 6.1298 3.0112 25 6 7.6233 5.1829 2.0190 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 4.2406 0.9540 0.8891 32 1 4.2399 0.9543 -0.8909 33 1 4.3031 3.4335 -0.8898 34 1 4.3037 3.4325 0.8902 35 1 6.4526 1.8553 0.2168 36 1 5.2244 6.2009 -0.1227 37 1 4.9103 7.8818 1.6491 38 1 5.2426 8.4434 3.9877 39 1 6.5649 7.7049 4.9229 40 1 6.3901 11.1533 6.2022 41 1 8.0781 6.1118 3.8900 42 1 8.3859 4.4252 2.1226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885008816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:48 Heat of formation + Delta-G solvation = -130.965271 kcal Electronic energy + Delta-G solvation = -24914.842815 eV Core-core repulsion = 21111.866315 eV Total energy + Delta-G solvation = -3802.976500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20607 -38.40281 -37.02672 -36.93755 -36.76392 -35.56603 -33.57121 -33.29106 -31.92854 -30.92379 -29.21628 -25.56787 -25.06836 -23.75170 -23.40632 -22.45040 -20.65511 -19.13251 -18.60896 -18.48177 -18.20229 -17.52992 -16.85125 -16.60267 -16.44182 -16.02817 -15.93247 -15.66577 -15.45469 -15.36965 -15.16339 -14.60341 -14.42007 -13.97344 -13.84415 -13.56910 -13.49467 -13.38613 -13.34942 -13.26037 -13.18736 -13.02362 -12.74884 -12.66367 -12.63910 -12.47760 -12.12201 -12.04938 -12.00230 -11.64842 -11.41205 -11.01434 -10.62728 -10.54218 -9.93068 -9.92477 -9.17712 -8.24886 -6.36786 -0.67066 -0.04890 0.43172 0.56543 1.39545 1.40303 1.51141 1.74106 2.05331 2.36515 2.56664 2.82871 2.87036 3.07968 3.30507 3.72297 3.90758 4.01057 4.01420 4.07402 4.19873 4.20503 4.43750 4.48495 4.51911 4.56663 4.60936 4.77732 4.84723 4.95350 4.97629 5.06695 5.10620 5.14732 5.27258 5.29404 5.30563 5.37203 5.70240 5.90504 5.95460 6.10189 6.13199 6.75085 7.31994 8.85024 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.002450 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.970938 B =11424.141344 C =12736.364987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.446 4.446 3 S 1.287 4.713 4 O -0.918 6.918 5 C -0.455 4.455 6 C 0.118 3.882 7 N -1.098 6.098 8 S 2.721 3.279 9 O -0.983 6.983 10 O -0.992 6.992 11 C -0.698 4.698 12 C -0.023 4.023 13 C -0.152 4.152 14 C -0.001 4.001 15 C 0.048 3.952 16 C -0.533 4.533 17 H 0.052 0.948 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.961 3.039 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.153 4.153 25 C -0.015 4.015 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.433 0.567 36 H 0.151 0.849 37 H 0.130 0.870 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.267 0.733 41 H 0.132 0.868 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 -24.513 -5.295 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.584 4.584 3 S 1.486 4.514 4 O -0.914 6.914 5 C -0.593 4.593 6 C -0.009 4.009 7 N -0.863 5.863 8 S 2.812 3.188 9 O -0.973 6.973 10 O -0.982 6.982 11 C -0.786 4.786 12 C -0.042 4.042 13 C -0.171 4.171 14 C -0.001 4.001 15 C 0.011 3.989 16 C -0.571 4.571 17 H 0.070 0.930 18 C -0.189 4.189 19 N -0.563 5.563 20 Si 0.786 3.214 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.194 1.194 24 C -0.172 4.172 25 C -0.034 4.034 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.176 0.824 31 H 0.189 0.811 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.271 0.729 36 H 0.169 0.831 37 H 0.148 0.852 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.076 0.924 41 H 0.150 0.850 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.570 -23.329 -5.953 25.556 hybrid contribution 1.067 0.017 -1.162 1.577 sum -7.503 -23.312 -7.114 25.502 Atomic orbital electron populations 1.21482 0.92372 1.03761 1.02735 1.27530 1.03743 1.18264 1.08911 1.70028 0.84698 0.87101 1.09559 1.93054 1.77684 1.67191 1.53467 1.27925 1.19460 1.01540 1.10414 1.21105 0.78566 0.97590 1.03627 1.55195 1.16076 1.26502 1.88516 1.00811 0.72116 0.72793 0.73104 1.93542 1.35652 1.80861 1.87292 1.93544 1.80747 1.78993 1.44876 1.30653 1.09968 1.19739 1.18246 1.21019 0.94148 0.91502 0.97500 1.21294 1.01498 1.00108 0.94172 1.20828 0.91656 0.92459 0.95191 1.18268 0.96780 0.91732 0.92085 1.21295 1.25193 1.01566 1.09018 0.92964 1.25819 0.96928 1.01410 0.94707 1.70042 1.40236 1.32227 1.13789 0.85505 0.79077 0.79039 0.77809 1.19821 1.20327 1.19375 1.21317 0.99197 0.95883 1.00781 1.21019 0.95099 0.96984 0.90297 0.94795 0.90578 0.89011 0.90868 0.82398 0.81101 0.89222 0.92041 0.87647 0.72921 0.83149 0.85180 0.96624 0.96554 0.92399 0.85045 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.92 71.98 0.71 -0.45 16 2 C -0.45 -2.71 6.64 71.98 0.48 -2.24 16 3 S 1.29 12.49 13.16 -56.49 -0.74 11.75 16 4 O -0.92 -24.07 18.14 -148.98 -2.70 -26.77 16 5 C -0.46 -3.58 6.06 71.98 0.44 -3.15 16 6 C 0.12 1.71 6.23 86.38 0.54 2.25 16 7 N -1.10 -17.35 6.00 -187.49 -1.12 -18.47 16 8 S 2.72 68.51 5.74 -56.49 -0.32 68.19 16 9 O -0.98 -28.72 17.28 -128.00 -2.21 -30.94 16 10 O -0.99 -31.62 16.75 -128.00 -2.14 -33.76 16 11 C -0.70 -19.81 5.95 22.27 0.13 -19.68 16 12 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 13 C -0.15 -5.43 9.70 22.27 0.22 -5.22 16 14 C 0.00 -0.04 5.07 -19.86 -0.10 -0.14 16 15 C 0.05 2.39 5.10 29.10 0.15 2.54 16 16 C -0.53 -29.15 9.09 25.60 0.23 -28.92 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.58 5.46 84.65 0.46 1.04 16 19 N -0.92 -53.21 13.29 21.45 0.28 -52.93 16 20 Si 0.96 43.26 29.54 68.60 2.03 45.28 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C -0.15 -5.39 9.70 22.27 0.22 -5.17 16 25 C -0.01 -0.44 9.52 22.27 0.21 -0.22 16 26 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.16 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.17 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 1.22 7.75 -2.39 -0.02 1.20 16 34 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.43 4.20 8.65 -96.74 -0.84 3.36 16 36 H 0.15 3.91 7.61 -2.91 -0.02 3.89 16 37 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 38 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 39 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 40 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.16 3.70 7.62 -2.91 -0.02 3.68 16 Total: -1.00 -86.05 384.29 -2.85 -88.90 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.19 Total: 8.57 kcal Atomic # 6 Polarization: -63.72 SS G_CDS: 3.90 Total: -59.83 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -0.84 Total: -71.40 kcal Atomic # 8 Polarization: -84.41 SS G_CDS: -7.06 Total: -91.47 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 81.00 SS G_CDS: -1.07 Total: 79.94 kcal Total: -86.05 -2.85 -88.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885008816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.061 kcal (2) G-P(sol) polarization free energy of solvation -86.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds