Wall clock time and date at job start Wed Apr 1 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81400 * 109.47227 * 2 1 4 4 O 1.42101 * 109.47313 * 63.61191 * 3 2 1 5 5 C 1.81399 * 103.00172 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47147 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47289 * 179.97438 * 6 5 3 8 8 S 1.65593 * 120.00245 * 165.00019 * 7 6 5 9 9 O 1.42095 * 106.40441 * 178.54314 * 8 7 6 10 10 O 1.42107 * 106.40414 * 311.46258 * 8 7 6 11 11 C 1.76199 * 107.21807 * 65.00204 * 8 7 6 12 12 C 1.38237 * 119.99830 * 269.72698 * 11 8 7 13 13 C 1.38237 * 119.99949 * 179.76588 * 12 11 8 14 14 C 1.38239 * 120.00031 * 0.50821 * 13 12 11 15 15 C 1.50697 * 120.00115 * 179.72660 * 14 13 12 16 16 C 1.50701 * 109.46987 * 270.02006 * 15 14 13 17 17 H 1.07995 * 119.99943 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99812 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00370 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99645 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47014 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47106 * 120.00029 * 20 18 16 23 23 H 1.48506 * 109.46897 * 239.99776 * 20 18 16 24 24 C 1.38238 * 119.99553 * 359.74619 * 14 13 12 25 25 C 1.38227 * 120.00132 * 359.97438 * 24 14 13 26 26 H 1.08998 * 109.46794 * 299.99998 * 1 2 3 27 27 H 1.09002 * 109.46725 * 60.00173 * 1 2 3 28 28 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47273 * 239.99945 * 2 1 3 30 30 H 1.08998 * 109.47409 * 119.99609 * 2 1 3 31 31 H 1.09001 * 109.47190 * 59.99989 * 5 3 2 32 32 H 1.08996 * 109.47243 * 299.99572 * 5 3 2 33 33 H 1.09001 * 109.47289 * 59.99804 * 6 5 3 34 34 H 1.09004 * 109.47261 * 300.00060 * 6 5 3 35 35 H 0.97000 * 119.99344 * 345.00347 * 7 6 5 36 36 H 1.08003 * 120.00197 * 359.97438 * 12 11 8 37 37 H 1.08004 * 120.00342 * 180.23209 * 13 12 11 38 38 H 1.08998 * 109.47067 * 30.02250 * 15 14 13 39 39 H 1.08999 * 109.46837 * 150.01878 * 15 14 13 40 40 H 0.96993 * 119.99906 * 180.02562 * 19 18 16 41 41 H 1.07996 * 119.99551 * 179.97438 * 24 14 13 42 42 H 1.08000 * 119.99915 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7312 2.3554 1.2001 5 6 3.9371 1.5058 -0.0008 6 6 4.6064 2.8816 -0.0015 7 7 6.0622 2.7166 -0.0015 8 16 7.0410 3.9995 -0.3734 9 8 8.3776 3.5324 -0.2534 10 8 6.5207 4.5684 -1.5672 11 6 6.8205 5.2072 0.8905 12 6 5.8484 6.1806 0.7544 13 6 5.6722 7.1252 1.7481 14 6 6.4751 7.1028 2.8732 15 6 6.2872 8.1363 3.9537 16 6 7.1589 9.3308 3.6634 17 1 7.7866 9.3404 2.7846 18 6 7.1559 10.4110 4.5203 19 7 6.3919 10.3992 5.5907 20 14 8.2370 11.8914 4.1607 21 1 8.9952 11.6574 2.9056 22 1 7.3872 13.0996 4.0084 23 1 9.1885 12.0936 5.2829 24 6 7.4507 6.1326 3.0068 25 6 7.6230 5.1846 2.0158 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.2399 0.9544 -0.8910 32 1 4.2406 0.9543 0.8890 33 1 4.3037 3.4334 0.8884 34 1 4.3029 3.4329 -0.8915 35 1 6.4526 1.8557 0.2162 36 1 5.2243 6.2010 -0.1269 37 1 4.9102 7.8834 1.6436 38 1 5.2427 8.4469 3.9817 39 1 6.5651 7.7092 4.9173 40 1 6.3896 11.1592 6.1933 41 1 8.0783 6.1154 3.8856 42 1 8.3855 4.4269 2.1200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885008819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:52 Heat of formation + Delta-G solvation = -101.204482 kcal Electronic energy + Delta-G solvation = -24954.594554 eV Core-core repulsion = 21152.908579 eV Total energy + Delta-G solvation = -3801.685975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.79621 -37.21670 -36.20745 -36.01703 -35.79335 -33.66966 -33.20472 -31.55260 -30.57298 -30.27626 -27.42634 -24.57611 -23.72532 -22.97000 -22.30861 -20.90613 -19.58603 -18.06652 -17.75293 -17.29137 -16.71800 -16.43808 -15.93202 -15.70079 -15.18782 -15.02407 -14.96606 -14.80398 -14.36097 -14.32901 -13.81141 -13.29159 -13.12756 -13.08322 -12.84759 -12.65138 -12.50060 -12.25633 -12.11246 -12.02818 -11.97581 -11.91692 -11.69580 -11.63721 -11.47932 -10.94796 -10.92227 -10.52483 -10.48175 -10.42666 -9.83848 -9.69009 -9.57817 -8.65665 -8.58454 -8.53250 -8.37645 -6.16057 -4.21087 0.42849 1.05450 1.32757 1.80382 2.16416 3.05503 3.23938 3.31839 3.37076 3.37961 3.72253 4.11476 4.25648 4.38395 4.42817 4.44088 4.53408 4.57455 4.93712 5.04278 5.12033 5.18193 5.23683 5.24665 5.30665 5.37868 5.40653 5.61955 5.65122 5.73273 5.83166 5.92087 6.25687 6.33299 6.50614 6.72782 6.84599 6.91960 7.30649 7.44365 7.60246 7.79162 8.14230 8.83990 9.43821 10.94051 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.002516 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.839553 B =11125.755761 C =12631.283903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.454 4.454 3 S 1.252 4.748 4 O -0.836 6.836 5 C -0.462 4.462 6 C 0.136 3.864 7 N -1.117 6.117 8 S 2.698 3.302 9 O -0.965 6.965 10 O -0.962 6.962 11 C -0.706 4.706 12 C -0.025 4.025 13 C -0.145 4.145 14 C 0.027 3.973 15 C 0.038 3.962 16 C -0.516 4.516 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.146 4.146 25 C -0.022 4.022 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.416 0.584 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -22.343 -15.244 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.592 4.592 3 S 1.448 4.552 4 O -0.831 6.831 5 C -0.600 4.600 6 C 0.009 3.991 7 N -0.877 5.877 8 S 2.791 3.209 9 O -0.955 6.955 10 O -0.952 6.952 11 C -0.796 4.796 12 C -0.045 4.045 13 C -0.163 4.163 14 C 0.027 3.973 15 C 0.002 3.998 16 C -0.554 4.554 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.165 4.165 25 C -0.042 4.042 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.145 0.855 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.251 0.749 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.147 0.853 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.219 -21.173 -15.847 28.008 hybrid contribution 1.288 -0.470 2.611 2.949 sum -7.931 -21.644 -13.236 26.581 Atomic orbital electron populations 1.21364 0.91956 1.03131 1.02881 1.27592 1.04062 1.20059 1.07453 1.70879 0.85196 0.86863 1.12231 1.93190 1.75484 1.63536 1.50895 1.27964 1.20766 1.02820 1.08404 1.20817 0.79336 0.95576 1.03396 1.55631 1.16007 1.27185 1.88860 1.01560 0.72508 0.72799 0.74041 1.93569 1.34078 1.80646 1.87247 1.93556 1.80320 1.77940 1.43403 1.30294 1.11133 1.19768 1.18415 1.20801 0.93810 0.92249 0.97614 1.21262 1.01470 0.99412 0.94200 1.21136 0.89155 0.91870 0.95155 1.18550 0.98631 0.91291 0.91358 1.21003 1.24877 1.00150 1.09391 0.92211 1.25016 0.95677 0.98655 0.94884 1.69958 1.38800 1.31205 1.12995 0.86419 0.80283 0.82228 0.78455 1.19558 1.20780 1.20829 1.21249 0.99665 0.95793 0.99802 1.20759 0.94949 0.97252 0.91219 0.92102 0.91215 0.91616 0.86435 0.89763 0.85540 0.88751 0.90857 0.88923 0.74939 0.85102 0.85222 0.94640 0.94731 0.92681 0.85349 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 9.92 37.16 0.37 -0.28 16 2 C -0.45 -1.98 6.64 37.16 0.25 -1.73 16 3 S 1.25 6.98 13.16 -107.50 -1.41 5.56 16 4 O -0.84 -10.83 18.14 -35.23 -0.64 -11.47 16 5 C -0.46 -2.54 6.07 37.16 0.23 -2.31 16 6 C 0.14 1.15 6.23 -4.04 -0.03 1.13 16 7 N -1.12 -10.50 6.00 -10.61 -0.06 -10.56 16 8 S 2.70 36.06 5.74 -107.50 -0.62 35.44 16 9 O -0.97 -15.19 17.28 -57.17 -0.99 -16.18 16 10 O -0.96 -14.52 16.75 -57.17 -0.96 -15.48 16 11 C -0.71 -11.24 5.95 -39.58 -0.24 -11.47 16 12 C -0.03 -0.41 9.52 -39.58 -0.38 -0.79 16 13 C -0.14 -2.74 9.70 -39.58 -0.38 -3.13 16 14 C 0.03 0.58 5.07 -104.62 -0.53 0.05 16 15 C 0.04 0.96 5.10 -29.04 -0.15 0.81 16 16 C -0.52 -14.18 9.09 -34.44 -0.31 -14.50 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 20 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.15 -2.80 9.70 -39.59 -0.38 -3.19 16 25 C -0.02 -0.37 9.52 -39.59 -0.38 -0.75 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.12 0.18 8.14 -51.92 -0.42 -0.25 16 30 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.62 7.75 -51.93 -0.40 0.22 16 35 H 0.42 2.97 8.65 -34.47 -0.30 2.67 16 36 H 0.13 1.77 7.61 -52.48 -0.40 1.37 16 37 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 38 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.03 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.13 2.34 8.06 -52.49 -0.42 1.91 16 42 H 0.13 1.86 7.62 -52.49 -0.40 1.46 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -39.01 384.29 -11.31 -50.32 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.11 Total: -0.02 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: -2.03 Total: -34.59 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.67 Total: -35.70 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -2.58 Total: -43.12 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 43.04 SS G_CDS: -2.03 Total: 41.01 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.01 -11.31 -50.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885008819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.887 kcal (2) G-P(sol) polarization free energy of solvation -39.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds