Wall clock time and date at job start Wed Apr 1 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81400 * 109.47227 * 2 1 4 4 O 1.42101 * 109.47313 * 63.61191 * 3 2 1 5 5 C 1.81399 * 103.00172 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47147 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47289 * 179.97438 * 6 5 3 8 8 S 1.65593 * 120.00245 * 165.00019 * 7 6 5 9 9 O 1.42095 * 106.40441 * 178.54314 * 8 7 6 10 10 O 1.42107 * 106.40414 * 311.46258 * 8 7 6 11 11 C 1.76199 * 107.21807 * 65.00204 * 8 7 6 12 12 C 1.38237 * 119.99830 * 269.72698 * 11 8 7 13 13 C 1.38237 * 119.99949 * 179.76588 * 12 11 8 14 14 C 1.38239 * 120.00031 * 0.50821 * 13 12 11 15 15 C 1.50697 * 120.00115 * 179.72660 * 14 13 12 16 16 C 1.50701 * 109.46987 * 270.02006 * 15 14 13 17 17 H 1.07995 * 119.99943 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99812 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00370 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99645 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47014 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47106 * 120.00029 * 20 18 16 23 23 H 1.48506 * 109.46897 * 239.99776 * 20 18 16 24 24 C 1.38238 * 119.99553 * 359.74619 * 14 13 12 25 25 C 1.38227 * 120.00132 * 359.97438 * 24 14 13 26 26 H 1.08998 * 109.46794 * 299.99998 * 1 2 3 27 27 H 1.09002 * 109.46725 * 60.00173 * 1 2 3 28 28 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47273 * 239.99945 * 2 1 3 30 30 H 1.08998 * 109.47409 * 119.99609 * 2 1 3 31 31 H 1.09001 * 109.47190 * 59.99989 * 5 3 2 32 32 H 1.08996 * 109.47243 * 299.99572 * 5 3 2 33 33 H 1.09001 * 109.47289 * 59.99804 * 6 5 3 34 34 H 1.09004 * 109.47261 * 300.00060 * 6 5 3 35 35 H 0.97000 * 119.99344 * 345.00347 * 7 6 5 36 36 H 1.08003 * 120.00197 * 359.97438 * 12 11 8 37 37 H 1.08004 * 120.00342 * 180.23209 * 13 12 11 38 38 H 1.08998 * 109.47067 * 30.02250 * 15 14 13 39 39 H 1.08999 * 109.46837 * 150.01878 * 15 14 13 40 40 H 0.96993 * 119.99906 * 180.02562 * 19 18 16 41 41 H 1.07996 * 119.99551 * 179.97438 * 24 14 13 42 42 H 1.08000 * 119.99915 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7312 2.3554 1.2001 5 6 3.9371 1.5058 -0.0008 6 6 4.6064 2.8816 -0.0015 7 7 6.0622 2.7166 -0.0015 8 16 7.0410 3.9995 -0.3734 9 8 8.3776 3.5324 -0.2534 10 8 6.5207 4.5684 -1.5672 11 6 6.8205 5.2072 0.8905 12 6 5.8484 6.1806 0.7544 13 6 5.6722 7.1252 1.7481 14 6 6.4751 7.1028 2.8732 15 6 6.2872 8.1363 3.9537 16 6 7.1589 9.3308 3.6634 17 1 7.7866 9.3404 2.7846 18 6 7.1559 10.4110 4.5203 19 7 6.3919 10.3992 5.5907 20 14 8.2370 11.8914 4.1607 21 1 8.9952 11.6574 2.9056 22 1 7.3872 13.0996 4.0084 23 1 9.1885 12.0936 5.2829 24 6 7.4507 6.1326 3.0068 25 6 7.6230 5.1846 2.0158 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.2399 0.9544 -0.8910 32 1 4.2406 0.9543 0.8890 33 1 4.3037 3.4334 0.8884 34 1 4.3029 3.4329 -0.8915 35 1 6.4526 1.8557 0.2162 36 1 5.2243 6.2010 -0.1269 37 1 4.9102 7.8834 1.6436 38 1 5.2427 8.4469 3.9817 39 1 6.5651 7.7092 4.9173 40 1 6.3896 11.1592 6.1933 41 1 8.0783 6.1154 3.8856 42 1 8.3855 4.4269 2.1200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885008819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:51 Heat of formation + Delta-G solvation = -131.352227 kcal Electronic energy + Delta-G solvation = -24955.901858 eV Core-core repulsion = 21152.908579 eV Total energy + Delta-G solvation = -3802.993279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.25619 -38.36481 -36.99879 -36.91654 -36.75427 -35.62397 -33.56725 -33.34661 -31.98871 -30.91503 -29.27846 -25.62645 -25.06230 -23.80805 -23.41198 -22.50270 -20.64001 -19.12029 -18.64529 -18.51182 -18.19760 -17.51064 -16.89347 -16.62735 -16.44011 -16.07516 -16.00372 -15.58288 -15.43147 -15.39757 -15.20142 -14.66444 -14.47957 -13.96687 -13.93726 -13.58619 -13.45148 -13.43947 -13.38574 -13.21146 -13.14193 -12.93337 -12.79394 -12.70840 -12.67659 -12.47678 -12.14919 -12.07001 -12.04409 -11.67890 -11.46416 -11.02255 -10.68713 -10.54089 -9.99220 -9.97780 -9.17712 -8.29514 -6.42861 -0.64959 -0.08629 0.36883 0.57529 1.36030 1.36821 1.50308 1.74872 2.04279 2.32960 2.53941 2.81227 2.88314 3.02845 3.31306 3.71947 3.85244 3.94986 4.04103 4.08267 4.12907 4.20910 4.39082 4.44493 4.49263 4.53697 4.61098 4.78695 4.80502 4.87785 4.98012 5.06063 5.07675 5.12432 5.21113 5.22328 5.27541 5.30437 5.64289 5.82668 5.89934 6.06457 6.06807 6.69140 7.26397 8.81010 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.002516 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.839553 B =11125.755761 C =12631.283903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.446 4.446 3 S 1.289 4.711 4 O -0.919 6.919 5 C -0.455 4.455 6 C 0.117 3.883 7 N -1.099 6.099 8 S 2.729 3.271 9 O -0.984 6.984 10 O -0.972 6.972 11 C -0.707 4.707 12 C -0.021 4.021 13 C -0.157 4.157 14 C -0.006 4.006 15 C 0.048 3.952 16 C -0.532 4.532 17 H 0.055 0.945 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.159 4.159 25 C -0.021 4.021 26 H 0.031 0.969 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.159 0.841 30 H 0.071 0.929 31 H 0.170 0.830 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.115 0.885 35 H 0.430 0.570 36 H 0.164 0.836 37 H 0.131 0.869 38 H 0.012 0.988 39 H 0.010 0.990 40 H 0.268 0.732 41 H 0.128 0.872 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 -24.458 -18.396 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.585 4.585 3 S 1.488 4.512 4 O -0.915 6.915 5 C -0.593 4.593 6 C -0.009 4.009 7 N -0.863 5.863 8 S 2.818 3.182 9 O -0.974 6.974 10 O -0.962 6.962 11 C -0.793 4.793 12 C -0.040 4.040 13 C -0.176 4.176 14 C -0.007 4.007 15 C 0.011 3.989 16 C -0.570 4.570 17 H 0.073 0.927 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.201 1.201 24 C -0.178 4.178 25 C -0.040 4.040 26 H 0.050 0.950 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.177 0.823 30 H 0.090 0.910 31 H 0.187 0.813 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.268 0.732 36 H 0.181 0.819 37 H 0.148 0.852 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.076 0.924 41 H 0.146 0.854 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.595 -23.260 -18.969 31.221 hybrid contribution 1.043 -0.044 3.483 3.636 sum -7.551 -23.304 -15.487 28.981 Atomic orbital electron populations 1.21482 0.92395 1.03732 1.02732 1.27537 1.03728 1.18338 1.08878 1.69929 0.84678 0.87025 1.09568 1.93071 1.77683 1.67192 1.53511 1.27918 1.19471 1.01554 1.10403 1.21111 0.78578 0.97589 1.03661 1.55270 1.16159 1.26487 1.88370 1.00756 0.72066 0.72435 0.72937 1.93545 1.35838 1.80753 1.87250 1.93544 1.80545 1.78629 1.43463 1.30947 1.09639 1.20146 1.18543 1.21132 0.94006 0.91111 0.97715 1.21350 1.01400 1.00488 0.94360 1.20848 0.91845 0.92581 0.95398 1.18267 0.96726 0.92026 0.91909 1.21303 1.25103 1.01336 1.09229 0.92677 1.25926 0.96995 1.01699 0.94594 1.70071 1.40280 1.32304 1.13974 0.85352 0.78497 0.78482 0.78467 1.19042 1.19913 1.20054 1.21310 0.99441 0.96216 1.00837 1.21034 0.95449 0.96878 0.90673 0.94970 0.88830 0.90626 0.82304 0.91019 0.81254 0.89102 0.92934 0.86714 0.73245 0.81893 0.85150 0.96981 0.97128 0.92353 0.85442 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.92 71.98 0.71 -0.44 16 2 C -0.45 -2.67 6.64 71.98 0.48 -2.19 16 3 S 1.29 12.19 13.16 -56.49 -0.74 11.45 16 4 O -0.92 -24.47 18.14 -148.98 -2.70 -27.17 16 5 C -0.46 -3.47 6.07 71.98 0.44 -3.03 16 6 C 0.12 1.66 6.23 86.38 0.54 2.20 16 7 N -1.10 -16.96 6.00 -187.48 -1.12 -18.08 16 8 S 2.73 64.87 5.74 -56.49 -0.32 64.55 16 9 O -0.98 -28.05 17.28 -128.00 -2.21 -30.26 16 10 O -0.97 -26.03 16.75 -128.00 -2.14 -28.18 16 11 C -0.71 -21.31 5.95 22.27 0.13 -21.18 16 12 C -0.02 -0.66 9.52 22.27 0.21 -0.44 16 13 C -0.16 -6.10 9.70 22.27 0.22 -5.89 16 14 C -0.01 -0.28 5.07 -19.87 -0.10 -0.39 16 15 C 0.05 2.54 5.10 29.10 0.15 2.69 16 16 C -0.53 -30.38 9.09 25.60 0.23 -30.15 16 17 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 18 C 0.01 0.38 5.46 84.65 0.46 0.84 16 19 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 20 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 C -0.16 -6.27 9.70 22.27 0.22 -6.05 16 25 C -0.02 -0.70 9.52 22.27 0.21 -0.48 16 26 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.16 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.17 -0.15 8.14 -2.39 -0.02 -0.16 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.14 7.75 -2.38 -0.02 1.12 16 35 H 0.43 4.49 8.65 -96.75 -0.84 3.65 16 36 H 0.16 4.03 7.61 -2.91 -0.02 4.01 16 37 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 38 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 39 H 0.01 0.59 8.09 -2.39 -0.02 0.57 16 40 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 41 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.16 4.17 7.62 -2.91 -0.02 4.15 16 Total: -1.00 -88.15 384.29 -2.85 -91.01 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.19 Total: 10.09 kcal Atomic # 6 Polarization: -68.42 SS G_CDS: 3.90 Total: -64.52 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -0.84 Total: -73.40 kcal Atomic # 8 Polarization: -78.55 SS G_CDS: -7.06 Total: -85.61 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 77.07 SS G_CDS: -1.07 Total: 76.00 kcal Total: -88.15 -2.85 -91.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885008819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.344 kcal (2) G-P(sol) polarization free energy of solvation -88.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds