Wall clock time and date at job start Wed Apr 1 2020 03:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42095 * 109.46794 * 2 1 4 4 C 1.81399 * 103.00117 * 243.61166 * 2 1 3 5 5 C 1.52997 * 109.47146 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46901 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46824 * 179.97438 * 6 5 4 8 8 S 1.65608 * 119.99984 * 164.99948 * 7 6 5 9 9 O 1.42094 * 106.40080 * 178.54267 * 8 7 6 10 10 O 1.42102 * 106.39953 * 311.46498 * 8 7 6 11 11 C 1.76197 * 107.21510 * 64.99864 * 8 7 6 12 12 C 1.38232 * 120.00264 * 269.72814 * 11 8 7 13 13 C 1.38238 * 119.99698 * 179.76824 * 12 11 8 14 14 C 1.38232 * 120.00213 * 0.50694 * 13 12 11 15 15 C 1.50705 * 120.00051 * 179.72355 * 14 13 12 16 16 C 1.50700 * 109.46927 * 270.02233 * 15 14 13 17 17 H 1.08000 * 120.00292 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99646 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00101 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47464 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47274 * 120.00325 * 20 18 16 23 23 H 1.48502 * 109.47491 * 240.00282 * 20 18 16 24 24 C 1.38230 * 119.99798 * 359.74653 * 14 13 12 25 25 C 1.38226 * 120.00486 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.47124 * 56.38663 * 1 2 3 27 27 H 1.09001 * 109.46975 * 296.38784 * 1 2 3 28 28 H 1.09004 * 109.47147 * 176.38748 * 1 2 3 29 29 H 1.08998 * 109.46898 * 300.00463 * 4 2 1 30 30 H 1.08997 * 109.46949 * 60.00084 * 4 2 1 31 31 H 1.09002 * 109.47190 * 300.00308 * 5 4 2 32 32 H 1.08997 * 109.47148 * 60.00182 * 5 4 2 33 33 H 1.08994 * 109.47506 * 299.99839 * 6 5 4 34 34 H 1.08997 * 109.47120 * 60.00105 * 6 5 4 35 35 H 0.96996 * 120.00250 * 345.00229 * 7 6 5 36 36 H 1.08001 * 120.00182 * 359.97438 * 12 11 8 37 37 H 1.08007 * 119.99784 * 180.22773 * 13 12 11 38 38 H 1.09000 * 109.46701 * 30.02322 * 15 14 13 39 39 H 1.09000 * 109.47214 * 150.01823 * 15 14 13 40 40 H 0.97000 * 120.00044 * 179.97438 * 19 18 16 41 41 H 1.08012 * 119.99779 * 179.97438 * 24 14 13 42 42 H 1.07997 * 120.00316 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 3.7424 -0.8628 -1.7375 6 6 4.0865 -1.5248 -3.0732 7 7 5.5422 -1.5981 -3.2211 8 16 6.2088 -2.5835 -4.3732 9 8 7.6161 -2.4068 -4.2866 10 8 5.5742 -3.8475 -4.2361 11 6 5.7235 -1.9510 -5.9445 12 6 4.5581 -2.3971 -6.5392 13 6 4.1750 -1.8972 -7.7698 14 6 4.9627 -0.9592 -8.4104 15 6 4.5481 -0.4189 -9.7549 16 6 5.1302 -1.2822 -10.8443 17 1 5.7397 -2.1364 -10.5888 18 6 4.8846 -0.9816 -12.1674 19 7 4.1429 0.0588 -12.4785 20 14 5.6067 -2.0513 -13.5178 21 1 6.3979 -3.1505 -12.9088 22 1 4.5078 -2.6266 -14.3344 23 1 6.4879 -1.2275 -14.3839 24 6 6.1307 -0.5170 -7.8181 25 6 6.5110 -1.0124 -6.5850 26 1 -0.3633 0.5689 -0.8558 27 1 -0.3633 0.4567 0.9206 28 1 -0.3634 -1.0257 -0.0648 29 1 1.8031 -1.7915 -1.6084 30 1 1.8032 -0.1970 -2.3995 31 1 4.1617 0.1430 -1.7121 32 1 4.1609 -1.4516 -0.9213 33 1 3.6672 -2.5305 -3.0990 34 1 3.6680 -0.9356 -3.8892 35 1 6.1156 -1.0697 -2.6442 36 1 3.9452 -3.1336 -6.0409 37 1 3.2626 -2.2431 -8.2328 38 1 3.4607 -0.4243 -9.8289 39 1 4.9147 0.6017 -9.8651 40 1 3.9704 0.2706 -13.4093 41 1 6.7464 0.2157 -8.3189 42 1 7.4238 -0.6672 -6.1224 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885016655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:43 Heat of formation + Delta-G solvation = -103.419544 kcal Electronic energy + Delta-G solvation = -24791.725816 eV Core-core repulsion = 20989.943789 eV Total energy + Delta-G solvation = -3801.782027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.83025 -37.24672 -36.62777 -36.06704 -35.78905 -33.70238 -32.58592 -31.58097 -30.60490 -29.40866 -27.45583 -26.19638 -23.75464 -22.47527 -22.16931 -20.91983 -19.45169 -17.99338 -17.79877 -17.30383 -16.59838 -16.46483 -16.08971 -15.52383 -15.17949 -15.15372 -14.85993 -14.52030 -14.38925 -14.26017 -13.83419 -13.41290 -13.29284 -13.13579 -13.00443 -12.82902 -12.41262 -12.26579 -12.10001 -12.05298 -11.94939 -11.81897 -11.72628 -11.51357 -11.43922 -10.95802 -10.94982 -10.53992 -10.51669 -10.50805 -9.83210 -9.70753 -9.58699 -8.68776 -8.61898 -8.56384 -8.41129 -6.19319 -4.24333 0.47027 1.08535 1.30012 1.76694 2.17609 3.02861 3.21634 3.29717 3.34960 3.37136 3.73337 4.08462 4.34411 4.36205 4.45029 4.48819 4.61320 4.67596 4.78000 5.00550 5.13459 5.18863 5.20898 5.23809 5.27424 5.43648 5.46978 5.62016 5.69569 5.76068 5.84538 5.88521 6.22248 6.30203 6.47673 6.77061 6.81212 6.88268 7.26736 7.40513 7.56279 7.75950 8.10903 8.80760 9.40762 10.90778 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.002296 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.111062 B =12194.681297 C =13580.527447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.491 4.491 2 S 1.244 4.756 3 O -0.852 6.852 4 C -0.451 4.451 5 C -0.107 4.107 6 C 0.120 3.880 7 N -1.121 6.121 8 S 2.700 3.300 9 O -0.965 6.965 10 O -0.964 6.964 11 C -0.705 4.705 12 C -0.025 4.025 13 C -0.146 4.146 14 C 0.027 3.973 15 C 0.039 3.961 16 C -0.517 4.517 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.146 4.146 25 C -0.022 4.022 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.417 0.583 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.129 0.871 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 -3.735 26.983 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.443 4.557 3 O -0.847 6.847 4 C -0.588 4.588 5 C -0.147 4.147 6 C -0.007 4.007 7 N -0.881 5.881 8 S 2.792 3.208 9 O -0.956 6.956 10 O -0.954 6.954 11 C -0.795 4.795 12 C -0.045 4.045 13 C -0.165 4.165 14 C 0.026 3.974 15 C 0.002 3.998 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.165 4.165 25 C -0.041 4.041 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.141 0.859 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.251 0.749 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.147 0.853 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.396 -4.114 27.578 28.228 hybrid contribution -0.776 1.384 -3.064 3.450 sum -5.172 -2.731 24.514 25.202 Atomic orbital electron populations 1.27647 1.21696 1.08153 1.07354 1.70503 0.86469 0.99104 0.99672 1.93153 1.73360 1.36743 1.81445 1.27663 1.01976 1.10773 1.18408 1.21334 0.92898 1.02364 0.98065 1.21320 0.79270 1.02043 0.98101 1.55589 1.14755 1.65235 1.52486 1.01511 0.72838 0.73280 0.73147 1.93570 1.29031 1.86250 1.86716 1.93553 1.77287 1.38459 1.86101 1.30324 1.08315 1.16504 1.24311 1.20781 0.93092 0.95436 0.95180 1.21246 1.01404 0.98768 0.95083 1.21126 0.91083 0.89736 0.95437 1.18547 0.97809 0.96956 0.86477 1.21006 1.32198 1.12314 0.89954 0.92211 1.25015 0.95025 0.95337 0.98841 1.69955 1.37824 1.26713 1.18487 0.86417 0.78995 0.80422 0.81545 1.19547 1.20791 1.20784 1.21258 0.97755 1.02193 0.95284 1.20780 0.96546 0.92053 0.94724 0.90045 0.87641 0.86816 0.85872 0.89074 0.90575 0.89677 0.89721 0.91475 0.74914 0.85251 0.85354 0.94737 0.94725 0.92668 0.85326 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -1.84 10.74 101.05 1.09 -0.76 16 2 S 1.24 5.48 13.80 -107.50 -1.48 4.00 16 3 O -0.85 -10.26 18.14 -35.23 -0.64 -10.89 16 4 C -0.45 -2.10 5.92 37.16 0.22 -1.88 16 5 C -0.11 -0.64 5.36 -26.73 -0.14 -0.79 16 6 C 0.12 0.96 6.22 -4.04 -0.03 0.94 16 7 N -1.12 -10.39 6.00 -10.62 -0.06 -10.46 16 8 S 2.70 35.82 5.74 -107.50 -0.62 35.21 16 9 O -0.97 -15.19 17.28 -57.17 -0.99 -16.17 16 10 O -0.96 -14.71 16.75 -57.17 -0.96 -15.67 16 11 C -0.71 -10.94 5.95 -39.58 -0.24 -11.18 16 12 C -0.03 -0.40 9.52 -39.58 -0.38 -0.78 16 13 C -0.15 -2.69 9.70 -39.58 -0.38 -3.07 16 14 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 15 C 0.04 0.95 5.10 -29.03 -0.15 0.81 16 16 C -0.52 -14.04 9.09 -34.44 -0.31 -14.35 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.15 -2.74 9.70 -39.59 -0.38 -3.12 16 25 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 26 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.11 0.13 8.14 -51.92 -0.42 -0.29 16 29 H 0.12 0.23 8.14 -51.92 -0.42 -0.19 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.62 7.75 -51.93 -0.40 0.22 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.42 2.98 8.65 -34.47 -0.30 2.69 16 36 H 0.13 1.72 7.61 -52.49 -0.40 1.32 16 37 H 0.13 2.23 8.06 -52.48 -0.42 1.80 16 38 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.13 2.30 8.06 -52.48 -0.42 1.87 16 42 H 0.13 1.84 7.62 -52.49 -0.40 1.44 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -39.36 384.32 -11.06 -50.41 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.11 Total: -0.15 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: -1.71 Total: -33.34 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.67 Total: -35.32 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -2.58 Total: -42.74 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 41.31 SS G_CDS: -2.10 Total: 39.21 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.36 -11.06 -50.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885016655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.005 kcal (2) G-P(sol) polarization free energy of solvation -39.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds