Wall clock time and date at job start Wed Apr 1 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42095 * 109.46794 * 2 1 4 4 C 1.81399 * 103.00117 * 243.61166 * 2 1 3 5 5 C 1.52997 * 109.47146 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46901 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46824 * 179.97438 * 6 5 4 8 8 S 1.65608 * 119.99984 * 164.99948 * 7 6 5 9 9 O 1.42094 * 106.40080 * 178.54267 * 8 7 6 10 10 O 1.42102 * 106.39953 * 311.46498 * 8 7 6 11 11 C 1.76197 * 107.21510 * 64.99864 * 8 7 6 12 12 C 1.38232 * 120.00264 * 269.72814 * 11 8 7 13 13 C 1.38238 * 119.99698 * 179.76824 * 12 11 8 14 14 C 1.38232 * 120.00213 * 0.50694 * 13 12 11 15 15 C 1.50705 * 120.00051 * 179.72355 * 14 13 12 16 16 C 1.50700 * 109.46927 * 270.02233 * 15 14 13 17 17 H 1.08000 * 120.00292 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99646 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00101 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47464 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47274 * 120.00325 * 20 18 16 23 23 H 1.48502 * 109.47491 * 240.00282 * 20 18 16 24 24 C 1.38230 * 119.99798 * 359.74653 * 14 13 12 25 25 C 1.38226 * 120.00486 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.47124 * 56.38663 * 1 2 3 27 27 H 1.09001 * 109.46975 * 296.38784 * 1 2 3 28 28 H 1.09004 * 109.47147 * 176.38748 * 1 2 3 29 29 H 1.08998 * 109.46898 * 300.00463 * 4 2 1 30 30 H 1.08997 * 109.46949 * 60.00084 * 4 2 1 31 31 H 1.09002 * 109.47190 * 300.00308 * 5 4 2 32 32 H 1.08997 * 109.47148 * 60.00182 * 5 4 2 33 33 H 1.08994 * 109.47506 * 299.99839 * 6 5 4 34 34 H 1.08997 * 109.47120 * 60.00105 * 6 5 4 35 35 H 0.96996 * 120.00250 * 345.00229 * 7 6 5 36 36 H 1.08001 * 120.00182 * 359.97438 * 12 11 8 37 37 H 1.08007 * 119.99784 * 180.22773 * 13 12 11 38 38 H 1.09000 * 109.46701 * 30.02322 * 15 14 13 39 39 H 1.09000 * 109.47214 * 150.01823 * 15 14 13 40 40 H 0.97000 * 120.00044 * 179.97438 * 19 18 16 41 41 H 1.08012 * 119.99779 * 179.97438 * 24 14 13 42 42 H 1.07997 * 120.00316 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 3.7424 -0.8628 -1.7375 6 6 4.0865 -1.5248 -3.0732 7 7 5.5422 -1.5981 -3.2211 8 16 6.2088 -2.5835 -4.3732 9 8 7.6161 -2.4068 -4.2866 10 8 5.5742 -3.8475 -4.2361 11 6 5.7235 -1.9510 -5.9445 12 6 4.5581 -2.3971 -6.5392 13 6 4.1750 -1.8972 -7.7698 14 6 4.9627 -0.9592 -8.4104 15 6 4.5481 -0.4189 -9.7549 16 6 5.1302 -1.2822 -10.8443 17 1 5.7397 -2.1364 -10.5888 18 6 4.8846 -0.9816 -12.1674 19 7 4.1429 0.0588 -12.4785 20 14 5.6067 -2.0513 -13.5178 21 1 6.3979 -3.1505 -12.9088 22 1 4.5078 -2.6266 -14.3344 23 1 6.4879 -1.2275 -14.3839 24 6 6.1307 -0.5170 -7.8181 25 6 6.5110 -1.0124 -6.5850 26 1 -0.3633 0.5689 -0.8558 27 1 -0.3633 0.4567 0.9206 28 1 -0.3634 -1.0257 -0.0648 29 1 1.8031 -1.7915 -1.6084 30 1 1.8032 -0.1970 -2.3995 31 1 4.1617 0.1430 -1.7121 32 1 4.1609 -1.4516 -0.9213 33 1 3.6672 -2.5305 -3.0990 34 1 3.6680 -0.9356 -3.8892 35 1 6.1156 -1.0697 -2.6442 36 1 3.9452 -3.1336 -6.0409 37 1 3.2626 -2.2431 -8.2328 38 1 3.4607 -0.4243 -9.8289 39 1 4.9147 0.6017 -9.8651 40 1 3.9704 0.2706 -13.4093 41 1 6.7464 0.2157 -8.3189 42 1 7.4238 -0.6672 -6.1224 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885016655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:42 Heat of formation + Delta-G solvation = -133.793022 kcal Electronic energy + Delta-G solvation = -24793.042909 eV Core-core repulsion = 20989.943789 eV Total energy + Delta-G solvation = -3803.099120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.25363 -38.36623 -37.31435 -36.95257 -36.75135 -35.62403 -33.35280 -33.16994 -31.98299 -29.73308 -29.27316 -26.77597 -25.62135 -23.77264 -22.79363 -22.47115 -20.50673 -19.03448 -18.61867 -18.35495 -18.33480 -17.41409 -16.89569 -16.56136 -16.53039 -16.00506 -15.86653 -15.65536 -15.43812 -15.15921 -14.90895 -14.66057 -14.47371 -14.03461 -13.94682 -13.76268 -13.49234 -13.43947 -13.40192 -13.21252 -13.14842 -12.92536 -12.71094 -12.69448 -12.63216 -12.51342 -12.17338 -12.06424 -11.88617 -11.67620 -11.44774 -11.06858 -10.68842 -10.46845 -9.98662 -9.97303 -9.14674 -8.30024 -6.42975 -0.61507 -0.08036 0.37380 0.70914 1.35466 1.36798 1.49748 1.83521 2.03055 2.32706 2.55493 2.82085 2.94611 3.02589 3.32834 3.85070 3.92618 3.96393 4.03797 4.05275 4.13269 4.32242 4.43578 4.45195 4.51369 4.57856 4.64177 4.75636 4.79641 4.88646 4.97207 5.08259 5.13803 5.19684 5.21589 5.22614 5.30914 5.31539 5.64173 5.83287 5.90210 6.06826 6.10158 6.69094 7.26312 8.80349 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.002296 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.111062 B =12194.681297 C =13580.527447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.490 4.490 2 S 1.296 4.704 3 O -0.933 6.933 4 C -0.450 4.450 5 C -0.110 4.110 6 C 0.108 3.892 7 N -1.106 6.106 8 S 2.730 3.270 9 O -0.987 6.987 10 O -0.976 6.976 11 C -0.703 4.703 12 C -0.018 4.018 13 C -0.156 4.156 14 C -0.006 4.006 15 C 0.048 3.952 16 C -0.532 4.532 17 H 0.054 0.946 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.276 1.276 24 C -0.159 4.159 25 C -0.021 4.021 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.148 0.852 29 H 0.161 0.839 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.429 0.571 36 H 0.162 0.838 37 H 0.131 0.869 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.267 0.733 41 H 0.127 0.873 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 -6.084 28.997 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 1.497 4.503 3 O -0.929 6.929 4 C -0.589 4.589 5 C -0.150 4.150 6 C -0.018 4.018 7 N -0.869 5.869 8 S 2.819 3.181 9 O -0.977 6.977 10 O -0.966 6.966 11 C -0.790 4.790 12 C -0.037 4.037 13 C -0.174 4.174 14 C -0.006 4.006 15 C 0.011 3.989 16 C -0.570 4.570 17 H 0.072 0.928 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.201 1.201 24 C -0.178 4.178 25 C -0.040 4.040 26 H 0.081 0.919 27 H 0.127 0.873 28 H 0.166 0.834 29 H 0.179 0.821 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.266 0.734 36 H 0.179 0.821 37 H 0.149 0.851 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.076 0.924 41 H 0.145 0.855 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.481 -6.440 29.581 30.603 hybrid contribution -0.828 2.067 -3.548 4.189 sum -5.309 -4.373 26.033 26.926 Atomic orbital electron populations 1.27647 1.20246 1.10184 1.06780 1.69572 0.86146 0.95945 0.98675 1.93018 1.76003 1.40590 1.83316 1.27686 1.01315 1.12538 1.17337 1.21395 0.93827 1.01777 0.98031 1.21593 0.78063 1.03112 0.99064 1.55254 1.15714 1.64901 1.51011 1.00692 0.71988 0.73020 0.72404 1.93541 1.30722 1.86620 1.86800 1.93538 1.77492 1.39541 1.86050 1.30897 1.07445 1.15013 1.25624 1.21089 0.93397 0.95256 0.94002 1.21328 1.01401 0.98539 0.96171 1.20830 0.93104 0.92135 0.94514 1.18266 0.96187 0.95639 0.88804 1.21311 1.32108 1.12419 0.91163 0.92760 1.25896 0.95337 0.96593 1.01281 1.70063 1.39037 1.28273 1.19192 0.85380 0.78404 0.78693 0.78498 1.19114 1.19928 1.20102 1.21306 0.97330 1.02676 0.96451 1.21029 0.97426 0.91858 0.93699 0.91853 0.87252 0.83360 0.82144 0.90704 0.92305 0.86687 0.88180 0.92164 0.73414 0.82070 0.85088 0.96825 0.97117 0.92361 0.85528 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.61 10.74 113.37 1.22 -1.39 16 2 S 1.30 9.43 13.80 -56.49 -0.78 8.65 16 3 O -0.93 -22.79 18.14 -148.98 -2.70 -25.50 16 4 C -0.45 -3.02 5.92 71.98 0.43 -2.60 16 5 C -0.11 -1.04 5.36 30.59 0.16 -0.87 16 6 C 0.11 1.42 6.22 86.38 0.54 1.95 16 7 N -1.11 -17.22 6.00 -187.50 -1.12 -18.35 16 8 S 2.73 64.75 5.74 -56.49 -0.32 64.43 16 9 O -0.99 -28.53 17.28 -128.00 -2.21 -30.75 16 10 O -0.98 -26.50 16.75 -128.00 -2.14 -28.65 16 11 C -0.70 -20.46 5.95 22.27 0.13 -20.33 16 12 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16 13 C -0.16 -5.73 9.70 22.27 0.22 -5.52 16 14 C -0.01 -0.24 5.07 -19.87 -0.10 -0.34 16 15 C 0.05 2.49 5.10 29.10 0.15 2.64 16 16 C -0.53 -29.86 9.09 25.60 0.23 -29.62 16 17 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 18 C 0.01 0.44 5.46 84.66 0.46 0.90 16 19 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 20 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 C -0.16 -6.06 9.70 22.26 0.22 -5.85 16 25 C -0.02 -0.67 9.52 22.27 0.21 -0.46 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.10 1.05 7.75 -2.39 -0.02 1.03 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.43 4.91 8.65 -96.75 -0.84 4.07 16 36 H 0.16 3.77 7.61 -2.91 -0.02 3.74 16 37 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 38 H 0.01 0.74 8.09 -2.39 -0.02 0.72 16 39 H 0.01 0.58 8.09 -2.39 -0.02 0.56 16 40 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.13 4.72 8.06 -2.90 -0.02 4.70 16 42 H 0.15 4.08 7.62 -2.91 -0.02 4.05 16 Total: -1.00 -87.64 384.32 -2.71 -90.36 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.19 Total: 10.15 kcal Atomic # 6 Polarization: -65.90 SS G_CDS: 4.08 Total: -61.82 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -0.84 Total: -72.72 kcal Atomic # 8 Polarization: -77.83 SS G_CDS: -7.06 Total: -84.89 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 74.18 SS G_CDS: -1.10 Total: 73.08 kcal Total: -87.64 -2.71 -90.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885016655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.438 kcal (2) G-P(sol) polarization free energy of solvation -87.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds