Wall clock time and date at job start Wed Apr 1 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 S 1.81399 * 109.46958 * 180.02562 * 4 2 1 6 6 C 1.81406 * 102.99894 * 180.02562 * 5 4 2 7 7 O 1.42100 * 109.46960 * 296.39016 * 5 4 2 8 8 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 9 9 S 1.65605 * 119.99754 * 264.99661 * 8 2 1 10 10 O 1.42101 * 106.40144 * 178.54162 * 9 8 2 11 11 O 1.42100 * 106.40424 * 311.46264 * 9 8 2 12 12 C 1.76206 * 107.21435 * 65.00457 * 9 8 2 13 13 C 1.38227 * 119.99778 * 269.72237 * 12 9 8 14 14 C 1.38241 * 120.00186 * 179.74436 * 13 12 9 15 15 C 1.38241 * 119.99305 * 0.53519 * 14 13 12 16 16 C 1.50703 * 119.99718 * 179.76786 * 15 14 13 17 17 C 1.50699 * 109.46941 * 269.97496 * 16 15 14 18 18 H 1.07998 * 120.00066 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99851 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99627 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00031 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47304 * 89.99741 * 21 19 17 23 23 H 1.48500 * 109.46942 * 209.99739 * 21 19 17 24 24 H 1.48504 * 109.46803 * 329.99296 * 21 19 17 25 25 C 1.38227 * 120.00200 * 359.73971 * 15 14 13 26 26 C 1.38234 * 119.99871 * 89.99837 * 12 9 8 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.08992 * 109.47399 * 300.00166 * 4 2 1 31 31 H 1.09004 * 109.46724 * 60.00652 * 4 2 1 32 32 H 1.09006 * 109.46931 * 60.00226 * 6 5 4 33 33 H 1.09005 * 109.47169 * 179.97438 * 6 5 4 34 34 H 1.08992 * 109.47104 * 300.00071 * 6 5 4 35 35 H 0.97000 * 120.00636 * 85.00048 * 8 2 1 36 36 H 1.08005 * 120.00567 * 359.97438 * 13 12 9 37 37 H 1.07995 * 120.00333 * 180.29601 * 14 13 12 38 38 H 1.09007 * 109.46959 * 29.97349 * 16 15 14 39 39 H 1.09000 * 109.47292 * 149.97369 * 16 15 14 40 40 H 0.97001 * 119.99069 * 180.02562 * 20 19 17 41 41 H 1.08007 * 120.00021 * 180.02562 * 25 15 14 42 42 H 1.07998 * 120.00451 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 16 3.8540 -0.7219 -1.2487 6 6 4.2622 -1.6051 -2.7799 7 8 4.3281 0.6150 -1.3329 8 7 2.0183 -0.6906 1.1962 9 16 2.4122 0.1772 2.5505 10 8 2.8123 -0.7697 3.5315 11 8 3.2436 1.2443 2.1156 12 6 0.9273 0.9148 3.1474 13 6 0.5545 2.1711 2.7076 14 6 -0.6131 2.7475 3.1718 15 6 -1.4020 2.0722 4.0842 16 6 -2.6722 2.7028 4.5943 17 6 -2.3713 3.5082 5.8319 18 1 -1.3614 3.5580 6.2115 19 6 -3.3853 4.1814 6.4798 20 7 -3.1227 4.8839 7.5602 21 14 -5.1321 4.0945 5.8237 22 1 -5.8370 2.9436 6.4432 23 1 -5.8491 5.3516 6.1569 24 1 -5.0990 3.9195 4.3494 25 6 -1.0262 0.8183 4.5282 26 6 0.1384 0.2394 4.0597 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.8436 -1.0684 -3.6314 33 1 5.3453 -1.6664 -2.8863 34 1 3.8429 -2.6104 -2.7422 35 1 2.1109 -1.6562 1.1950 36 1 1.1734 2.7008 1.9986 37 1 -0.9069 3.7271 2.8246 38 1 -3.0867 3.3568 3.8270 39 1 -3.3940 1.9224 4.8352 40 1 -3.8362 5.3571 8.0161 41 1 -1.6429 0.2904 5.2408 42 1 0.4322 -0.7401 4.4069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885101604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:06 Heat of formation + Delta-G solvation = -91.887776 kcal Electronic energy + Delta-G solvation = -25845.672725 eV Core-core repulsion = 22044.390752 eV Total energy + Delta-G solvation = -3801.281972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.93753 -37.48651 -36.93948 -35.94441 -35.80319 -33.70165 -31.76195 -30.96621 -30.65386 -29.33777 -28.05515 -27.62305 -23.51921 -22.47778 -21.95395 -20.76879 -19.69340 -18.13546 -17.81541 -17.32493 -16.92174 -16.49317 -15.77313 -15.45912 -15.23196 -15.07075 -14.56851 -14.34575 -14.30537 -13.93372 -13.74603 -13.59324 -13.21455 -13.16871 -13.03740 -12.78963 -12.66258 -12.37195 -12.07080 -12.05556 -11.97988 -11.91291 -11.79554 -11.71551 -11.42661 -10.99485 -10.93617 -10.54150 -10.52172 -10.24632 -10.14905 -9.85555 -9.54738 -8.71419 -8.64903 -8.55913 -8.45950 -6.19403 -4.20947 0.42422 1.13437 1.24139 1.71629 2.26320 2.93808 3.19039 3.27655 3.28202 3.46038 3.69502 4.03990 4.22868 4.29489 4.38943 4.54581 4.70770 4.82999 4.87176 4.98155 5.08682 5.12671 5.19034 5.20514 5.29762 5.49540 5.54431 5.56146 5.72308 5.80927 5.83201 5.97333 6.14070 6.23031 6.42454 6.67367 6.69323 6.73234 6.79667 7.27415 7.28681 7.52525 8.33591 8.84454 9.38740 10.93097 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.002588 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.174472 B =10815.968944 C =11256.532203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.170 3.830 3 H 0.099 0.901 4 C -0.455 4.455 5 S 1.240 4.760 6 C -0.497 4.497 7 O -0.833 6.833 8 N -1.122 6.122 9 S 2.689 3.311 10 O -0.960 6.960 11 O -0.953 6.953 12 C -0.700 4.700 13 C -0.024 4.024 14 C -0.142 4.142 15 C 0.032 3.968 16 C 0.006 3.994 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.143 4.143 26 C -0.019 4.019 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.419 0.581 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.130 0.870 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.318 -18.427 -19.535 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.062 3.938 3 H 0.117 0.883 4 C -0.593 4.593 5 S 1.437 4.563 6 C -0.654 4.654 7 O -0.828 6.828 8 N -0.881 5.881 9 S 2.781 3.219 10 O -0.950 6.950 11 O -0.943 6.943 12 C -0.789 4.789 13 C -0.043 4.043 14 C -0.161 4.161 15 C 0.031 3.969 16 C -0.031 4.031 17 C -0.558 4.558 18 H 0.094 0.906 19 C -0.131 4.131 20 N -0.531 5.531 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.162 4.162 26 C -0.039 4.039 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.254 0.746 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.147 0.853 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.706 -17.624 -18.400 27.637 hybrid contribution -2.631 0.844 -1.992 3.407 sum 8.075 -16.780 -20.393 27.615 Atomic orbital electron populations 1.22376 0.94017 1.03300 1.03475 1.20316 0.95073 0.96243 0.82176 0.88306 1.27969 1.21466 1.07417 1.02440 1.70920 0.86493 0.98101 1.00768 1.27733 1.08630 1.10958 1.18101 1.93220 1.72595 1.35386 1.81627 1.55903 1.84095 1.20059 1.28035 1.01921 0.74151 0.73505 0.72323 1.93583 1.81281 1.62216 1.57910 1.93631 1.63854 1.55459 1.81357 1.30328 1.24509 1.08149 1.15939 1.20792 0.95105 0.92192 0.96220 1.21213 0.95142 1.00521 0.99248 1.20697 0.95928 0.91718 0.88517 1.18985 0.90271 0.96255 0.97593 1.20817 0.97264 1.29532 1.08149 0.90650 1.24994 0.98979 0.94557 0.94539 1.69894 1.33266 1.31530 1.18445 0.86787 0.84792 0.77866 0.79945 1.20044 1.21081 1.18968 1.21219 0.97468 0.96306 1.01224 1.20761 0.92520 0.98416 0.92163 0.91458 0.90844 0.91474 0.85629 0.88084 0.90229 0.87643 0.86991 0.74576 0.85148 0.85291 0.94853 0.95262 0.92369 0.85254 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.52 37.16 0.35 -0.97 16 2 C 0.17 1.38 2.96 -67.93 -0.20 1.18 16 3 H 0.10 1.02 7.50 -51.93 -0.39 0.63 16 4 C -0.45 -2.46 5.54 37.16 0.21 -2.25 16 5 S 1.24 8.56 13.38 -107.50 -1.44 7.12 16 6 C -0.50 -2.34 10.74 101.05 1.09 -1.26 16 7 O -0.83 -12.14 18.14 -35.23 -0.64 -12.78 16 8 N -1.12 -8.88 5.01 -4.89 -0.02 -8.90 16 9 S 2.69 34.62 5.72 -107.50 -0.61 34.00 16 10 O -0.96 -13.99 17.28 -57.17 -0.99 -14.97 16 11 O -0.95 -15.40 16.61 -57.17 -0.95 -16.35 16 12 C -0.70 -10.30 5.06 -39.59 -0.20 -10.50 16 13 C -0.02 -0.37 8.60 -39.58 -0.34 -0.71 16 14 C -0.14 -2.51 9.70 -39.58 -0.38 -2.89 16 15 C 0.03 0.62 5.07 -104.62 -0.53 0.09 16 16 C 0.01 0.13 4.17 -29.03 -0.12 0.01 16 17 C -0.52 -14.18 9.65 -34.44 -0.33 -14.52 16 18 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 20 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 21 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 25 C -0.14 -2.48 9.70 -39.58 -0.38 -2.86 16 26 C -0.02 -0.29 9.52 -39.58 -0.38 -0.67 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.70 6.18 -51.93 -0.32 0.38 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.13 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.42 1.64 8.84 -34.47 -0.30 1.33 16 36 H 0.13 1.80 7.61 -52.48 -0.40 1.40 16 37 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 38 H 0.03 0.73 7.14 -51.92 -0.37 0.36 16 39 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 42 H 0.13 1.66 7.62 -52.49 -0.40 1.26 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -39.38 375.84 -10.18 -49.56 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.97 Total: 0.19 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: -1.32 Total: -33.43 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.75 Total: -34.84 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -2.58 Total: -44.11 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 43.18 SS G_CDS: -2.05 Total: 41.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.38 -10.18 -49.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885101604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.332 kcal (2) G-P(sol) polarization free energy of solvation -39.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds