Wall clock time and date at job start Wed Apr 1 2020 02:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 S 1.81399 * 109.46958 * 180.02562 * 4 2 1 6 6 C 1.81406 * 102.99894 * 180.02562 * 5 4 2 7 7 O 1.42100 * 109.46960 * 296.39016 * 5 4 2 8 8 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 9 9 S 1.65605 * 119.99754 * 264.99661 * 8 2 1 10 10 O 1.42101 * 106.40144 * 178.54162 * 9 8 2 11 11 O 1.42100 * 106.40424 * 311.46264 * 9 8 2 12 12 C 1.76206 * 107.21435 * 65.00457 * 9 8 2 13 13 C 1.38227 * 119.99778 * 269.72237 * 12 9 8 14 14 C 1.38241 * 120.00186 * 179.74436 * 13 12 9 15 15 C 1.38241 * 119.99305 * 0.53519 * 14 13 12 16 16 C 1.50703 * 119.99718 * 179.76786 * 15 14 13 17 17 C 1.50699 * 109.46941 * 269.97496 * 16 15 14 18 18 H 1.07998 * 120.00066 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99851 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99627 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00031 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47304 * 89.99741 * 21 19 17 23 23 H 1.48500 * 109.46942 * 209.99739 * 21 19 17 24 24 H 1.48504 * 109.46803 * 329.99296 * 21 19 17 25 25 C 1.38227 * 120.00200 * 359.73971 * 15 14 13 26 26 C 1.38234 * 119.99871 * 89.99837 * 12 9 8 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.08992 * 109.47399 * 300.00166 * 4 2 1 31 31 H 1.09004 * 109.46724 * 60.00652 * 4 2 1 32 32 H 1.09006 * 109.46931 * 60.00226 * 6 5 4 33 33 H 1.09005 * 109.47169 * 179.97438 * 6 5 4 34 34 H 1.08992 * 109.47104 * 300.00071 * 6 5 4 35 35 H 0.97000 * 120.00636 * 85.00048 * 8 2 1 36 36 H 1.08005 * 120.00567 * 359.97438 * 13 12 9 37 37 H 1.07995 * 120.00333 * 180.29601 * 14 13 12 38 38 H 1.09007 * 109.46959 * 29.97349 * 16 15 14 39 39 H 1.09000 * 109.47292 * 149.97369 * 16 15 14 40 40 H 0.97001 * 119.99069 * 180.02562 * 20 19 17 41 41 H 1.08007 * 120.00021 * 180.02562 * 25 15 14 42 42 H 1.07998 * 120.00451 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 16 3.8540 -0.7219 -1.2487 6 6 4.2622 -1.6051 -2.7799 7 8 4.3281 0.6150 -1.3329 8 7 2.0183 -0.6906 1.1962 9 16 2.4122 0.1772 2.5505 10 8 2.8123 -0.7697 3.5315 11 8 3.2436 1.2443 2.1156 12 6 0.9273 0.9148 3.1474 13 6 0.5545 2.1711 2.7076 14 6 -0.6131 2.7475 3.1718 15 6 -1.4020 2.0722 4.0842 16 6 -2.6722 2.7028 4.5943 17 6 -2.3713 3.5082 5.8319 18 1 -1.3614 3.5580 6.2115 19 6 -3.3853 4.1814 6.4798 20 7 -3.1227 4.8839 7.5602 21 14 -5.1321 4.0945 5.8237 22 1 -5.8370 2.9436 6.4432 23 1 -5.8491 5.3516 6.1569 24 1 -5.0990 3.9195 4.3494 25 6 -1.0262 0.8183 4.5282 26 6 0.1384 0.2394 4.0597 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.8436 -1.0684 -3.6314 33 1 5.3453 -1.6664 -2.8863 34 1 3.8429 -2.6104 -2.7422 35 1 2.1109 -1.6562 1.1950 36 1 1.1734 2.7008 1.9986 37 1 -0.9069 3.7271 2.8246 38 1 -3.0867 3.3568 3.8270 39 1 -3.3940 1.9224 4.8352 40 1 -3.8362 5.3571 8.0161 41 1 -1.6429 0.2904 5.2408 42 1 0.4322 -0.7401 4.4069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885101604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:05 Heat of formation + Delta-G solvation = -123.779703 kcal Electronic energy + Delta-G solvation = -25847.055662 eV Core-core repulsion = 22044.390752 eV Total energy + Delta-G solvation = -3802.664910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.26942 -38.46463 -37.80381 -36.96946 -36.75180 -35.54080 -33.55105 -31.96991 -31.62868 -29.77727 -29.70124 -28.20293 -25.27119 -23.76013 -22.63064 -22.30400 -20.70175 -19.16683 -19.03011 -18.63493 -18.24901 -17.32314 -16.77128 -16.52293 -16.34707 -15.97356 -15.87595 -15.72128 -15.31665 -14.92172 -14.62481 -14.49173 -14.44800 -14.30787 -14.17629 -13.64915 -13.57188 -13.53253 -13.38751 -13.22614 -13.14603 -13.08448 -12.70181 -12.57409 -12.54440 -12.43757 -12.08805 -11.99794 -11.92350 -11.72230 -11.54608 -11.16232 -10.82794 -10.62998 -9.94943 -9.91027 -9.14694 -8.33705 -6.40919 -0.63710 -0.07059 0.40425 0.62554 1.35638 1.37803 1.49015 1.80155 1.97164 2.32333 2.53726 2.81225 2.90742 3.00663 3.31649 3.65452 3.86259 3.97329 4.04309 4.08970 4.23330 4.29998 4.32742 4.47061 4.49417 4.53680 4.61802 4.79365 4.86285 4.87958 4.99617 5.00271 5.10782 5.16907 5.17460 5.20725 5.30098 5.39675 5.49495 5.78760 5.94585 6.19072 6.24740 6.65833 7.22882 8.82751 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023800 B = 0.002588 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.174472 B =10815.968944 C =11256.532203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.442 4.442 5 S 1.247 4.753 6 C -0.484 4.484 7 O -0.922 6.922 8 N -1.098 6.098 9 S 2.712 3.288 10 O -0.973 6.973 11 O -0.987 6.987 12 C -0.696 4.696 13 C -0.024 4.024 14 C -0.154 4.154 15 C -0.001 4.001 16 C 0.012 3.988 17 C -0.526 4.526 18 H 0.026 0.974 19 C 0.008 3.992 20 N -0.947 5.947 21 Si 0.954 3.046 22 H -0.262 1.262 23 H -0.285 1.285 24 H -0.242 1.242 25 C -0.152 4.152 26 C -0.014 4.014 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.176 0.824 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.442 0.558 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.269 0.731 41 H 0.137 0.863 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.246 -21.982 -22.134 32.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.055 3.945 3 H 0.089 0.911 4 C -0.581 4.581 5 S 1.449 4.551 6 C -0.643 4.643 7 O -0.918 6.918 8 N -0.864 5.864 9 S 2.802 3.198 10 O -0.963 6.963 11 O -0.976 6.976 12 C -0.783 4.783 13 C -0.044 4.044 14 C -0.172 4.172 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.563 4.563 18 H 0.044 0.956 19 C -0.190 4.190 20 N -0.587 5.587 21 Si 0.777 3.223 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.165 1.165 25 C -0.171 4.171 26 C -0.034 4.034 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.194 0.806 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.171 0.829 35 H 0.282 0.718 36 H 0.161 0.839 37 H 0.147 0.853 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.155 0.845 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.647 -21.190 -20.984 31.344 hybrid contribution -2.165 1.805 -1.283 3.097 sum 7.481 -19.385 -22.267 30.456 Atomic orbital electron populations 1.22379 0.93158 1.04733 1.02847 1.20405 0.95675 0.95475 0.82940 0.91090 1.27858 1.19134 1.10157 1.00967 1.69804 0.87278 0.95726 1.02340 1.27609 1.09078 1.12258 1.15376 1.93113 1.75463 1.38945 1.84278 1.55395 1.83639 1.21119 1.26239 1.01149 0.73125 0.72870 0.72649 1.93559 1.81335 1.62143 1.59268 1.93603 1.64704 1.57330 1.81993 1.30751 1.24710 1.07763 1.15121 1.20939 0.94498 0.92678 0.96236 1.21286 0.95859 1.00664 0.99438 1.20561 0.95775 0.93183 0.90573 1.18824 0.92288 0.96039 0.95371 1.21068 0.95111 1.30150 1.10005 0.95598 1.26031 1.04313 0.93989 0.94656 1.70067 1.35017 1.33207 1.20442 0.85602 0.78141 0.78084 0.80509 1.18685 1.21120 1.16532 1.21372 0.98520 0.95797 1.01372 1.21060 0.91449 0.99438 0.91404 0.88940 0.92931 0.90786 0.80621 0.87608 0.91050 0.87531 0.82861 0.71789 0.83883 0.85328 0.94315 0.94005 0.92249 0.84537 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.52 71.98 0.69 -1.45 16 2 C 0.16 2.27 2.96 44.99 0.13 2.40 16 3 H 0.07 1.44 7.50 -2.39 -0.02 1.42 16 4 C -0.44 -3.19 5.54 71.98 0.40 -2.79 16 5 S 1.25 15.14 13.38 -56.49 -0.76 14.38 16 6 C -0.48 -3.01 10.74 113.37 1.22 -1.79 16 7 O -0.92 -27.71 18.14 -148.98 -2.70 -30.41 16 8 N -1.10 -14.49 5.01 -169.38 -0.85 -15.34 16 9 S 2.71 66.31 5.72 -56.49 -0.32 65.98 16 10 O -0.97 -26.45 17.28 -128.00 -2.21 -28.66 16 11 O -0.99 -31.93 16.61 -128.00 -2.13 -34.06 16 12 C -0.70 -19.81 5.06 22.27 0.11 -19.70 16 13 C -0.02 -0.76 8.60 22.27 0.19 -0.57 16 14 C -0.15 -5.51 9.70 22.27 0.22 -5.30 16 15 C 0.00 -0.02 5.07 -19.87 -0.10 -0.12 16 16 C 0.01 0.53 4.17 29.10 0.12 0.65 16 17 C -0.53 -29.72 9.65 25.60 0.25 -29.47 16 18 H 0.03 1.66 7.98 -2.91 -0.02 1.64 16 19 C 0.01 0.43 5.47 84.66 0.46 0.89 16 20 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 21 Si 0.95 42.29 27.47 68.60 1.88 44.18 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 25 C -0.15 -5.18 9.70 22.27 0.22 -4.96 16 26 C -0.01 -0.41 9.52 22.27 0.21 -0.20 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.90 6.18 -2.39 -0.01 0.89 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.18 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.44 1.67 8.84 -96.74 -0.85 0.82 16 36 H 0.14 4.02 7.61 -2.91 -0.02 4.00 16 37 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.04 1.67 7.14 -2.38 -0.02 1.65 16 39 H 0.04 1.75 7.51 -2.39 -0.02 1.73 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 42 H 0.16 3.61 7.62 -2.91 -0.02 3.59 16 Total: -1.00 -91.59 375.84 -2.55 -94.14 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.12 Total: 10.68 kcal Atomic # 6 Polarization: -66.52 SS G_CDS: 4.11 Total: -62.40 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -0.55 Total: -73.83 kcal Atomic # 8 Polarization: -86.09 SS G_CDS: -7.04 Total: -93.13 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.18 kcal Atomic # 16 Polarization: 81.45 SS G_CDS: -1.08 Total: 80.37 kcal Total: -91.59 -2.55 -94.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885101604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.639 kcal (2) G-P(sol) polarization free energy of solvation -91.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds