Wall clock time and date at job start Wed Apr 1 2020 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 S 1.81396 * 109.47550 * 180.02562 * 4 2 1 6 6 C 1.81403 * 103.00073 * 180.02562 * 5 4 2 7 7 O 1.42094 * 109.47158 * 63.61032 * 5 4 2 8 8 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 9 9 S 1.65595 * 120.00153 * 265.00098 * 8 2 1 10 10 O 1.42092 * 106.40572 * 178.53728 * 9 8 2 11 11 O 1.42104 * 106.39982 * 311.45785 * 9 8 2 12 12 C 1.76208 * 107.21773 * 64.99449 * 9 8 2 13 13 C 1.38236 * 119.99982 * 269.72637 * 12 9 8 14 14 C 1.38234 * 119.99762 * 179.74327 * 13 12 9 15 15 C 1.38238 * 119.99682 * 0.53267 * 14 13 12 16 16 C 1.50701 * 119.99639 * 179.76474 * 15 14 13 17 17 C 1.50692 * 109.47335 * 269.97806 * 16 15 14 18 18 H 1.08000 * 120.00108 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00272 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99818 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00315 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46996 * 60.00245 * 21 19 17 23 23 H 1.48498 * 109.47140 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47188 * 300.00246 * 21 19 17 25 25 C 1.38233 * 120.00013 * 359.74659 * 15 14 13 26 26 C 1.38230 * 119.99580 * 90.00548 * 12 9 8 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 32 32 H 1.08997 * 109.47238 * 59.99860 * 6 5 4 33 33 H 1.09000 * 109.46706 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.46994 * 299.99231 * 6 5 4 35 35 H 0.96995 * 119.99699 * 84.99801 * 8 2 1 36 36 H 1.07999 * 120.00038 * 359.97438 * 13 12 9 37 37 H 1.08003 * 120.00141 * 180.29671 * 14 13 12 38 38 H 1.09001 * 109.47386 * 29.98174 * 16 15 14 39 39 H 1.09000 * 109.47112 * 149.97929 * 16 15 14 40 40 H 0.96997 * 120.00018 * 179.97438 * 20 19 17 41 41 H 1.08005 * 119.99825 * 180.02562 * 25 15 14 42 42 H 1.07999 * 120.00305 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 3.8540 -0.7220 -1.2489 6 6 4.2620 -1.6051 -2.7800 7 8 4.3272 -1.4639 -0.1331 8 7 2.0184 -0.6906 1.1962 9 16 2.4122 0.1771 2.5505 10 8 2.8124 -0.7697 3.5315 11 8 3.2437 1.2442 2.1155 12 6 0.9275 0.9148 3.1474 13 6 0.5546 2.1712 2.7077 14 6 -0.6129 2.7476 3.1719 15 6 -1.4018 2.0722 4.0843 16 6 -2.6719 2.7029 4.5944 17 6 -2.3710 3.5082 5.8320 18 1 -1.3610 3.5588 6.2111 19 6 -3.3851 4.1806 6.4805 20 7 -4.6152 4.1188 6.0192 21 14 -3.0122 5.1784 8.0151 22 1 -2.0289 6.2419 7.6872 23 1 -4.2637 5.7999 8.5176 24 1 -2.4473 4.2870 9.0599 25 6 -1.0260 0.8183 4.5283 26 6 0.1386 0.2395 4.0598 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.8434 -1.0686 -3.6314 33 1 5.3451 -1.6664 -2.8864 34 1 3.8428 -2.6105 -2.7422 35 1 2.1110 -1.6561 1.1949 36 1 1.1735 2.7008 1.9986 37 1 -0.9067 3.7272 2.8247 38 1 -3.0865 3.3569 3.8272 39 1 -3.3938 1.9225 4.8353 40 1 -5.3287 4.5915 6.4756 41 1 -1.6426 0.2905 5.2408 42 1 0.4320 -0.7404 4.4064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885101607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:13 Heat of formation + Delta-G solvation = -97.052649 kcal Electronic energy + Delta-G solvation = -25904.610091 eV Core-core repulsion = 22103.104153 eV Total energy + Delta-G solvation = -3801.505938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.83224 -37.39847 -36.82901 -35.87700 -35.67329 -33.68290 -31.56570 -30.80875 -30.57084 -29.29938 -27.71828 -27.34690 -23.71884 -22.38037 -21.87510 -20.89499 -19.53087 -17.96578 -17.86299 -17.23231 -16.45871 -16.36391 -15.73168 -15.35925 -15.06058 -14.98324 -14.66795 -14.37946 -14.34445 -13.80879 -13.59595 -13.50823 -13.18813 -13.10063 -12.88525 -12.80170 -12.50705 -12.17200 -11.99305 -11.93575 -11.87879 -11.70792 -11.65404 -11.48748 -11.35124 -10.94248 -10.90124 -10.59750 -10.47918 -10.44108 -9.78548 -9.72508 -9.56053 -8.58883 -8.53828 -8.52870 -8.37884 -6.17477 -4.22485 0.55592 1.17927 1.33407 1.79306 2.30309 3.08191 3.26163 3.30256 3.33942 3.51315 3.85551 4.12553 4.25936 4.37410 4.50418 4.59461 4.74209 4.84353 4.94741 5.00166 5.16084 5.20593 5.24207 5.29024 5.35002 5.52114 5.61073 5.72062 5.80136 5.91116 5.92150 6.04780 6.24606 6.33261 6.51112 6.83522 6.86843 6.91168 7.28567 7.42686 7.58477 7.77533 8.12916 8.82099 9.42489 10.92485 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.002525 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.246014 B =11085.985916 C =11522.698897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.169 3.831 3 H 0.104 0.896 4 C -0.456 4.456 5 S 1.249 4.751 6 C -0.497 4.497 7 O -0.837 6.837 8 N -1.117 6.117 9 S 2.699 3.301 10 O -0.963 6.963 11 O -0.964 6.964 12 C -0.704 4.704 13 C -0.025 4.025 14 C -0.145 4.145 15 C 0.026 3.974 16 C 0.040 3.960 17 C -0.518 4.518 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.145 4.145 26 C -0.021 4.021 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.419 0.581 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.265 0.735 41 H 0.128 0.872 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.423 -8.114 -20.748 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.060 3.940 3 H 0.122 0.878 4 C -0.594 4.594 5 S 1.446 4.554 6 C -0.654 4.654 7 O -0.832 6.832 8 N -0.877 5.877 9 S 2.791 3.209 10 O -0.954 6.954 11 O -0.954 6.954 12 C -0.794 4.794 13 C -0.044 4.044 14 C -0.164 4.164 15 C 0.026 3.974 16 C 0.003 3.997 17 C -0.556 4.556 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.164 4.164 26 C -0.041 4.041 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.254 0.746 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.703 -7.430 -19.697 25.119 hybrid contribution -1.588 -1.874 0.806 2.585 sum 12.116 -9.303 -18.891 24.295 Atomic orbital electron populations 1.22388 0.94079 1.03136 1.03632 1.20358 0.95074 0.96162 0.82368 0.87835 1.28025 1.21571 1.06349 1.03500 1.70926 0.86182 1.13920 0.84415 1.27726 1.08537 1.10685 1.18428 1.93155 1.72831 1.73791 1.43412 1.55798 1.83802 1.20264 1.27788 1.01570 0.73897 0.73171 0.72282 1.93560 1.81298 1.62173 1.58322 1.93534 1.64165 1.55956 1.81701 1.30382 1.24661 1.08243 1.16068 1.20772 0.95218 0.92121 0.96333 1.21236 0.95101 1.00611 0.99414 1.21110 0.96496 0.91601 0.88196 1.18526 0.88455 0.96052 0.96643 1.20931 0.94837 1.30102 1.09704 0.92339 1.25003 0.94928 0.96453 0.97750 1.69937 1.00055 1.42730 1.40296 0.86537 0.77654 0.80324 0.82859 1.20011 1.21123 1.20047 1.21242 0.97252 0.96482 1.01451 1.20764 0.92682 0.98312 0.92313 0.91007 0.90818 0.92012 0.88889 0.85102 0.87048 0.87739 0.90335 0.74568 0.85149 0.85309 0.94718 0.94791 0.92581 0.85426 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.52 37.16 0.35 -1.05 16 2 C 0.17 1.38 2.96 -67.93 -0.20 1.18 16 3 H 0.10 0.72 7.50 -51.93 -0.39 0.33 16 4 C -0.46 -2.44 5.54 37.16 0.21 -2.24 16 5 S 1.25 8.08 13.68 -107.50 -1.47 6.61 16 6 C -0.50 -2.28 10.74 101.05 1.09 -1.19 16 7 O -0.84 -11.11 16.82 -35.23 -0.59 -11.70 16 8 N -1.12 -12.62 4.21 -4.89 -0.02 -12.64 16 9 S 2.70 40.55 5.72 -107.50 -0.61 39.93 16 10 O -0.96 -17.60 17.28 -57.17 -0.99 -18.59 16 11 O -0.96 -15.60 16.61 -57.17 -0.95 -16.55 16 12 C -0.70 -11.08 5.06 -39.58 -0.20 -11.28 16 13 C -0.02 -0.39 8.60 -39.58 -0.34 -0.73 16 14 C -0.14 -2.57 9.70 -39.58 -0.38 -2.95 16 15 C 0.03 0.53 5.07 -104.62 -0.53 0.00 16 16 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16 17 C -0.52 -13.95 9.09 -34.44 -0.31 -14.27 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.15 -2.70 9.70 -39.59 -0.38 -3.08 16 26 C -0.02 -0.35 9.52 -39.59 -0.38 -0.73 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.75 6.18 -51.93 -0.32 0.43 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 32 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.42 4.50 8.56 -34.47 -0.30 4.21 16 36 H 0.13 1.65 7.61 -52.49 -0.40 1.25 16 37 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 38 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 42 H 0.13 1.90 7.62 -52.49 -0.40 1.50 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -37.38 377.36 -10.56 -47.94 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.99 Total: 1.86 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: -1.33 Total: -33.95 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.72 Total: -37.30 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -2.53 Total: -46.83 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 48.62 SS G_CDS: -2.09 Total: 46.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.38 -10.56 -47.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885101607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.115 kcal (2) G-P(sol) polarization free energy of solvation -37.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds