Wall clock time and date at job start Wed Apr 1 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 S 1.81396 * 109.47550 * 180.02562 * 4 2 1 6 6 C 1.81403 * 103.00073 * 180.02562 * 5 4 2 7 7 O 1.42094 * 109.47158 * 63.61032 * 5 4 2 8 8 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 9 9 S 1.65595 * 120.00153 * 265.00098 * 8 2 1 10 10 O 1.42092 * 106.40572 * 178.53728 * 9 8 2 11 11 O 1.42104 * 106.39982 * 311.45785 * 9 8 2 12 12 C 1.76208 * 107.21773 * 64.99449 * 9 8 2 13 13 C 1.38236 * 119.99982 * 269.72637 * 12 9 8 14 14 C 1.38234 * 119.99762 * 179.74327 * 13 12 9 15 15 C 1.38238 * 119.99682 * 0.53267 * 14 13 12 16 16 C 1.50701 * 119.99639 * 179.76474 * 15 14 13 17 17 C 1.50692 * 109.47335 * 269.97806 * 16 15 14 18 18 H 1.08000 * 120.00108 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00272 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99818 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00315 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46996 * 60.00245 * 21 19 17 23 23 H 1.48498 * 109.47140 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47188 * 300.00246 * 21 19 17 25 25 C 1.38233 * 120.00013 * 359.74659 * 15 14 13 26 26 C 1.38230 * 119.99580 * 90.00548 * 12 9 8 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 32 32 H 1.08997 * 109.47238 * 59.99860 * 6 5 4 33 33 H 1.09000 * 109.46706 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.46994 * 299.99231 * 6 5 4 35 35 H 0.96995 * 119.99699 * 84.99801 * 8 2 1 36 36 H 1.07999 * 120.00038 * 359.97438 * 13 12 9 37 37 H 1.08003 * 120.00141 * 180.29671 * 14 13 12 38 38 H 1.09001 * 109.47386 * 29.98174 * 16 15 14 39 39 H 1.09000 * 109.47112 * 149.97929 * 16 15 14 40 40 H 0.96997 * 120.00018 * 179.97438 * 20 19 17 41 41 H 1.08005 * 119.99825 * 180.02562 * 25 15 14 42 42 H 1.07999 * 120.00305 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 3.8540 -0.7220 -1.2489 6 6 4.2620 -1.6051 -2.7800 7 8 4.3272 -1.4639 -0.1331 8 7 2.0184 -0.6906 1.1962 9 16 2.4122 0.1771 2.5505 10 8 2.8124 -0.7697 3.5315 11 8 3.2437 1.2442 2.1155 12 6 0.9275 0.9148 3.1474 13 6 0.5546 2.1712 2.7077 14 6 -0.6129 2.7476 3.1719 15 6 -1.4018 2.0722 4.0843 16 6 -2.6719 2.7029 4.5944 17 6 -2.3710 3.5082 5.8320 18 1 -1.3610 3.5588 6.2111 19 6 -3.3851 4.1806 6.4805 20 7 -4.6152 4.1188 6.0192 21 14 -3.0122 5.1784 8.0151 22 1 -2.0289 6.2419 7.6872 23 1 -4.2637 5.7999 8.5176 24 1 -2.4473 4.2870 9.0599 25 6 -1.0260 0.8183 4.5283 26 6 0.1386 0.2395 4.0598 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.8434 -1.0686 -3.6314 33 1 5.3451 -1.6664 -2.8864 34 1 3.8428 -2.6105 -2.7422 35 1 2.1110 -1.6561 1.1949 36 1 1.1735 2.7008 1.9986 37 1 -0.9067 3.7272 2.8247 38 1 -3.0865 3.3569 3.8272 39 1 -3.3938 1.9225 4.8353 40 1 -5.3287 4.5915 6.4756 41 1 -1.6426 0.2905 5.2408 42 1 0.4320 -0.7404 4.4064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885101607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:12 Heat of formation + Delta-G solvation = -125.374718 kcal Electronic energy + Delta-G solvation = -25905.838228 eV Core-core repulsion = 22103.104153 eV Total energy + Delta-G solvation = -3802.734075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.090 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.24885 -38.47945 -37.77217 -36.96607 -36.60393 -35.58653 -33.31591 -31.96211 -31.55211 -29.70680 -29.25247 -28.14597 -25.57588 -23.73190 -22.57496 -22.45825 -20.65408 -19.13037 -18.64199 -18.52639 -18.26755 -17.29113 -16.85994 -16.48597 -16.28611 -15.95731 -15.78371 -15.56501 -15.27590 -15.12397 -14.63186 -14.44258 -14.23856 -14.16939 -14.00263 -13.59619 -13.40845 -13.39733 -13.27741 -13.23225 -13.20236 -13.17835 -12.67498 -12.64699 -12.55076 -12.42542 -12.17698 -12.02445 -11.97677 -11.66989 -11.44457 -11.14431 -10.63987 -10.48424 -9.94228 -9.92263 -9.06380 -8.26195 -6.38600 -0.64345 -0.06104 0.41391 0.70984 1.39306 1.40610 1.49053 1.86549 2.02431 2.35695 2.59049 2.82836 2.99641 3.06495 3.29076 3.70952 3.87763 3.98729 4.10790 4.17174 4.29725 4.35634 4.36935 4.48603 4.50443 4.57604 4.67699 4.82153 4.91967 4.93020 5.03549 5.12270 5.20726 5.25226 5.26913 5.27966 5.34666 5.43134 5.68155 5.87953 5.93411 6.00344 6.11198 6.73019 7.30304 8.83544 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.002525 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.246014 B =11085.985916 C =11522.698897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.152 3.848 3 H 0.120 0.880 4 C -0.445 4.445 5 S 1.261 4.739 6 C -0.486 4.486 7 O -0.913 6.913 8 N -1.109 6.109 9 S 2.716 3.284 10 O -0.998 6.998 11 O -0.973 6.973 12 C -0.697 4.697 13 C -0.013 4.013 14 C -0.148 4.148 15 C -0.001 4.001 16 C 0.049 3.951 17 C -0.534 4.534 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.962 3.038 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.271 1.271 25 C -0.155 4.155 26 C -0.022 4.022 27 H 0.098 0.902 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.148 0.852 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.422 0.578 36 H 0.166 0.834 37 H 0.136 0.864 38 H 0.017 0.983 39 H 0.010 0.990 40 H 0.267 0.733 41 H 0.125 0.875 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.563 -7.672 -23.056 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.045 3.955 3 H 0.138 0.862 4 C -0.584 4.584 5 S 1.462 4.538 6 C -0.645 4.645 7 O -0.909 6.909 8 N -0.871 5.871 9 S 2.807 3.193 10 O -0.989 6.989 11 O -0.963 6.963 12 C -0.785 4.785 13 C -0.032 4.032 14 C -0.167 4.167 15 C -0.001 4.001 16 C 0.012 3.988 17 C -0.571 4.571 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.787 3.213 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.197 1.197 25 C -0.174 4.174 26 C -0.042 4.042 27 H 0.117 0.883 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.196 0.804 32 H 0.166 0.834 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.258 0.742 36 H 0.183 0.817 37 H 0.154 0.846 38 H 0.036 0.964 39 H 0.029 0.971 40 H 0.076 0.924 41 H 0.143 0.857 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.850 -6.979 -21.988 27.436 hybrid contribution -1.925 -2.083 1.301 3.121 sum 12.925 -9.062 -20.687 26.022 Atomic orbital electron populations 1.22397 0.93792 1.03181 1.03871 1.20810 0.95383 0.97222 0.82088 0.86194 1.27954 1.19773 1.06753 1.03915 1.70023 0.86581 1.13558 0.83660 1.27623 1.08848 1.10224 1.17779 1.93060 1.75241 1.75529 1.47053 1.55575 1.83673 1.20304 1.27518 1.00958 0.73325 0.72684 0.72362 1.93511 1.81908 1.63020 1.60448 1.93516 1.64322 1.56581 1.81872 1.30674 1.24380 1.08303 1.15122 1.21085 0.94369 0.91783 0.95971 1.21323 0.95565 1.00884 0.98918 1.20811 0.95922 0.92823 0.90575 1.18252 0.90085 0.94920 0.95519 1.21260 0.94618 1.30454 1.10815 0.92873 1.25843 0.94742 0.97537 1.00767 1.70044 1.00913 1.43706 1.41732 0.85543 0.77760 0.78915 0.79131 1.19194 1.20409 1.19663 1.21245 0.98162 0.96172 1.01840 1.20919 0.91981 0.99004 0.92261 0.88293 0.93065 0.92137 0.88906 0.80402 0.83363 0.87727 0.91341 0.74162 0.81675 0.84569 0.96423 0.97129 0.92392 0.85704 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.52 71.98 0.69 -1.62 16 2 C 0.15 2.04 2.96 44.99 0.13 2.17 16 3 H 0.12 1.23 7.50 -2.39 -0.02 1.21 16 4 C -0.44 -3.12 5.54 71.98 0.40 -2.72 16 5 S 1.26 13.61 13.68 -56.49 -0.77 12.84 16 6 C -0.49 -2.98 10.74 113.37 1.22 -1.76 16 7 O -0.91 -23.97 16.82 -148.98 -2.51 -26.47 16 8 N -1.11 -23.37 4.21 -169.39 -0.71 -24.08 16 9 S 2.72 78.42 5.72 -56.49 -0.32 78.09 16 10 O -1.00 -36.20 17.28 -128.00 -2.21 -38.41 16 11 O -0.97 -29.79 16.61 -128.00 -2.13 -31.91 16 12 C -0.70 -21.07 5.06 22.27 0.11 -20.96 16 13 C -0.01 -0.38 8.60 22.27 0.19 -0.19 16 14 C -0.15 -5.18 9.70 22.27 0.22 -4.97 16 15 C 0.00 -0.04 5.07 -19.87 -0.10 -0.14 16 16 C 0.05 2.48 5.10 29.10 0.15 2.63 16 17 C -0.53 -29.48 9.09 25.60 0.23 -29.24 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.57 5.46 84.65 0.46 1.03 16 20 N -0.92 -53.79 13.29 21.45 0.28 -53.51 16 21 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 C -0.16 -5.88 9.70 22.27 0.22 -5.66 16 26 C -0.02 -0.74 9.52 22.27 0.21 -0.53 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.93 6.18 -2.39 -0.01 0.92 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.18 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.42 8.72 8.56 -96.75 -0.83 7.89 16 36 H 0.17 3.62 7.61 -2.91 -0.02 3.60 16 37 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.02 0.92 8.09 -2.39 -0.02 0.90 16 39 H 0.01 0.56 8.09 -2.39 -0.02 0.54 16 40 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.14 4.22 7.62 -2.91 -0.02 4.19 16 Total: -1.00 -83.62 377.36 -2.02 -85.63 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.20 Total: 14.30 kcal Atomic # 6 Polarization: -66.09 SS G_CDS: 4.13 Total: -61.96 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -0.43 Total: -77.59 kcal Atomic # 8 Polarization: -89.95 SS G_CDS: -6.84 Total: -96.80 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 92.02 SS G_CDS: -1.10 Total: 90.93 kcal Total: -83.62 -2.02 -85.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885101607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.740 kcal (2) G-P(sol) polarization free energy of solvation -83.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds