Wall clock time and date at job start Wed Apr 1 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 117.00040 * 2 1 4 4 O 1.20819 * 120.00512 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99912 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47289 * 180.02562 * 5 3 2 7 7 N 1.46507 * 109.47439 * 180.02562 * 6 5 3 8 8 C 1.36934 * 119.99490 * 270.34337 * 7 6 5 9 9 H 1.07997 * 120.00414 * 325.88180 * 8 7 6 10 10 C 1.38815 * 119.99654 * 145.88666 * 8 7 6 11 11 N 1.31615 * 120.00115 * 337.16249 * 10 8 7 12 12 Si 1.86801 * 119.99872 * 157.17048 * 10 8 7 13 13 H 1.48502 * 109.47160 * 59.99826 * 12 10 8 14 14 H 1.48504 * 109.46816 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47093 * 299.99644 * 12 10 8 16 16 C 1.46498 * 120.00130 * 90.33882 * 7 6 5 17 17 C 1.53001 * 109.46819 * 90.00338 * 16 7 6 18 18 O 1.42900 * 109.47382 * 65.00073 * 17 16 7 19 19 C 1.35942 * 117.00373 * 180.02562 * 18 17 16 20 20 C 1.38732 * 120.02353 * 0.25014 * 19 18 17 21 21 C 1.38145 * 119.98911 * 180.23481 * 20 19 18 22 22 C 1.38439 * 120.04882 * 359.49169 * 21 20 19 23 23 F 1.35095 * 119.98074 * 180.25880 * 22 21 20 24 24 C 1.38546 * 120.04549 * 0.27743 * 22 21 20 25 25 Cl 1.73604 * 119.99878 * 180.02562 * 24 22 21 26 26 C 1.38276 * 120.00961 * 359.97438 * 24 22 21 27 27 H 1.08994 * 109.46865 * 299.99931 * 1 2 3 28 28 H 1.09003 * 109.46665 * 60.00055 * 1 2 3 29 29 H 1.08996 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47053 * 59.99747 * 5 3 2 31 31 H 1.09001 * 109.47134 * 299.99996 * 5 3 2 32 32 H 1.08991 * 109.47541 * 59.99460 * 6 5 3 33 33 H 1.09003 * 109.46834 * 299.99431 * 6 5 3 34 34 H 0.97004 * 120.00345 * 179.97438 * 11 10 8 35 35 H 1.09000 * 109.47174 * 330.00509 * 16 7 6 36 36 H 1.08998 * 109.47261 * 210.00273 * 16 7 6 37 37 H 1.09005 * 109.47438 * 304.99973 * 17 16 7 38 38 H 1.08999 * 109.46942 * 184.99843 * 17 16 7 39 39 H 1.07999 * 120.00195 * 0.02562 * 20 19 18 40 40 H 1.08000 * 119.97804 * 179.76921 * 21 20 19 41 41 H 1.07994 * 120.02479 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7419 0.0002 7 7 5.4633 2.8186 -0.0010 8 6 6.1483 2.8464 1.1844 9 1 5.7218 3.3435 2.0430 10 6 7.3910 2.2357 1.2822 11 7 7.7210 1.2769 0.4432 12 14 8.5949 2.7745 2.6051 13 1 7.9860 2.5656 3.9433 14 1 9.8401 1.9724 2.4975 15 1 8.9154 4.2134 2.4262 16 6 6.1933 2.8654 -1.2703 17 6 6.3720 4.3222 -1.7023 18 8 7.2069 4.9994 -0.7608 19 6 7.4669 6.3123 -0.9988 20 6 6.9249 6.9364 -2.1129 21 6 7.1935 8.2694 -2.3567 22 6 7.9948 8.9859 -1.4843 23 9 8.2523 10.2907 -1.7212 24 6 8.5331 8.3656 -0.3685 25 17 9.5373 9.2654 0.7250 26 6 8.2699 7.0301 -0.1252 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9557 0.7808 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 3.6109 3.2355 0.8905 33 1 3.6102 3.2366 -0.8894 34 1 8.5896 0.8504 0.5113 35 1 5.6310 2.3266 -2.0329 36 1 7.1714 2.4012 -1.1442 37 1 5.3987 4.8114 -1.7424 38 1 6.8358 4.3545 -2.6882 39 1 6.2957 6.3794 -2.7913 40 1 6.7745 8.7541 -3.2261 41 1 8.6897 6.5463 0.7442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931536362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:56 Heat of formation + Delta-G solvation = -140.176360 kcal Electronic energy + Delta-G solvation = -27557.882999 eV Core-core repulsion = 23186.250194 eV Total energy + Delta-G solvation = -4371.632805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.92290 -41.39814 -41.06180 -38.75690 -37.88182 -37.44825 -37.02477 -33.84621 -32.56112 -31.98999 -30.61573 -29.60154 -28.45697 -26.26876 -25.10018 -24.00465 -23.28052 -22.17444 -21.21894 -19.42553 -18.85979 -18.53766 -18.31086 -17.77518 -17.51589 -17.41416 -16.92722 -16.67369 -16.41198 -16.20775 -15.54827 -15.45726 -15.12697 -14.93538 -14.70321 -14.46550 -14.19066 -14.01392 -13.85146 -13.62202 -13.43104 -13.19359 -12.97012 -12.78600 -12.71390 -12.58760 -12.37814 -12.24132 -12.06663 -12.02047 -11.78460 -11.67364 -11.53284 -11.48141 -11.38656 -10.46331 -10.10113 -9.11911 -8.60437 -7.78934 -5.33560 -0.13312 0.08791 0.81445 1.24328 1.47897 1.52496 1.57739 1.87404 2.37897 2.44316 2.57673 3.06989 3.34105 3.58060 3.63376 3.88108 4.05008 4.12326 4.15101 4.26524 4.34663 4.36559 4.38275 4.45906 4.57789 4.62012 4.71730 4.74783 4.80785 4.82589 4.94641 4.97807 5.09487 5.17882 5.27035 5.46384 5.49534 5.73599 5.83888 6.45384 6.63556 6.80566 7.21874 7.89035 8.37008 9.18094 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.002945 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.442595 B = 9505.761189 C =11074.632060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.121 4.121 6 C 0.164 3.836 7 N -0.585 5.585 8 C -0.246 4.246 9 H 0.046 0.954 10 C -0.013 4.013 11 N -0.907 5.907 12 Si 0.932 3.068 13 H -0.283 1.283 14 H -0.295 1.295 15 H -0.283 1.283 16 C 0.132 3.868 17 C 0.045 3.955 18 O -0.300 6.300 19 C 0.133 3.867 20 C -0.176 4.176 21 C -0.083 4.083 22 C 0.046 3.954 23 F -0.135 7.135 24 C -0.037 4.037 25 Cl -0.050 7.050 26 C -0.144 4.144 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.251 0.749 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.168 0.832 40 H 0.180 0.820 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 6.445 -8.053 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.316 3.684 4 O -0.430 6.430 5 C -0.161 4.161 6 C 0.037 3.963 7 N -0.305 5.305 8 C -0.376 4.376 9 H 0.064 0.936 10 C -0.211 4.211 11 N -0.552 5.552 12 Si 0.762 3.238 13 H -0.209 1.209 14 H -0.221 1.221 15 H -0.210 1.210 16 C 0.006 3.994 17 C -0.032 4.032 18 O -0.212 6.212 19 C 0.085 3.915 20 C -0.194 4.194 21 C -0.102 4.102 22 C 0.026 3.974 23 F -0.113 7.113 24 C -0.065 4.065 25 Cl -0.021 7.021 26 C -0.164 4.164 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.185 0.815 40 H 0.198 0.802 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.613 6.616 -7.801 11.668 hybrid contribution 0.775 0.404 1.049 1.365 sum -4.839 7.020 -6.752 10.876 Atomic orbital electron populations 1.23527 0.75150 1.05528 1.02445 1.86559 1.24950 1.33376 1.83787 1.24286 0.92489 0.80967 0.70631 1.90598 1.67961 1.37163 1.47245 1.22159 0.85033 1.03448 1.05464 1.20742 0.84170 0.91279 1.00093 1.43972 1.00205 1.83927 1.02382 1.18911 1.00677 1.27249 0.90779 0.93587 1.25305 1.00935 0.95568 0.99291 1.69988 1.21584 1.23146 1.40457 0.85907 0.79461 0.78059 0.80371 1.20907 1.22139 1.20971 1.21178 1.00325 0.91242 0.86638 1.23868 0.92686 0.95622 0.90974 1.86456 1.65493 1.18511 1.50780 1.19296 0.93411 0.85318 0.93445 1.21512 1.03898 0.95651 0.98366 1.21200 0.96108 0.93525 0.99366 1.17326 1.03726 0.79608 0.96720 1.91493 1.93012 1.32605 1.94223 1.20647 0.99465 0.92711 0.93680 1.98369 1.67186 1.74051 1.62512 1.20121 1.02623 0.91793 1.01849 0.92248 0.91768 0.85184 0.87726 0.89030 0.94309 0.92145 0.94007 0.90873 0.90088 0.91950 0.90453 0.81492 0.80231 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.46 10.56 -51.33 -0.54 -11.00 16 3 C 0.47 15.31 7.96 71.24 0.57 15.88 16 4 O -0.54 -19.50 15.73 21.99 0.35 -19.16 16 5 C -0.12 -4.16 6.14 29.85 0.18 -3.98 16 6 C 0.16 6.22 4.96 86.38 0.43 6.64 16 7 N -0.59 -25.55 2.43 -702.01 -1.71 -27.26 16 8 C -0.25 -12.44 8.99 84.03 0.76 -11.69 16 9 H 0.05 2.44 7.93 -2.91 -0.02 2.42 16 10 C -0.01 -0.68 4.95 84.86 0.42 -0.26 16 11 N -0.91 -48.42 11.31 21.65 0.24 -48.18 16 12 Si 0.93 43.75 29.61 68.60 2.03 45.78 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 16 C 0.13 5.19 5.72 86.38 0.49 5.68 16 17 C 0.05 1.46 5.08 71.98 0.37 1.83 16 18 O -0.30 -11.59 9.61 -92.89 -0.89 -12.49 16 19 C 0.13 4.31 6.68 22.49 0.15 4.46 16 20 C -0.18 -4.26 9.04 22.37 0.20 -4.06 16 21 C -0.08 -1.79 10.02 22.30 0.22 -1.56 16 22 C 0.05 1.21 7.27 22.39 0.16 1.37 16 23 F -0.13 -3.49 16.83 44.97 0.76 -2.73 16 24 C -0.04 -1.10 6.32 22.35 0.14 -0.96 16 25 Cl -0.05 -1.40 28.61 -2.72 -0.08 -1.47 16 26 C -0.14 -4.77 9.77 22.38 0.22 -4.55 16 27 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 28 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 31 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.04 1.58 8.00 -2.39 -0.02 1.56 16 33 H 0.06 2.08 8.03 -2.39 -0.02 2.06 16 34 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 35 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 36 H 0.08 3.82 5.32 -2.39 -0.01 3.81 16 37 H 0.06 1.82 7.65 -2.38 -0.02 1.81 16 38 H 0.08 2.00 7.67 -2.39 -0.02 1.98 16 39 H 0.17 3.18 6.30 -2.91 -0.02 3.16 16 40 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -61.17 373.56 6.73 -54.44 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.06 Total: 11.53 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 5.51 Total: 10.53 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.46 Total: -75.44 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.09 Total: -42.65 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.76 Total: -2.73 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.47 kcal Total: -61.17 6.73 -54.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931536362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.734 kcal (2) G-P(sol) polarization free energy of solvation -61.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds