Wall clock time and date at job start Wed Apr 1 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35783 * 117.00079 * 2 1 4 4 C 1.38640 * 120.12363 * 359.97438 * 3 2 1 5 5 C 1.38135 * 120.06119 * 180.02562 * 4 3 2 6 6 C 1.38438 * 120.32597 * 359.97438 * 5 4 3 7 7 C 1.37927 * 120.26113 * 359.97438 * 6 5 4 8 8 C 1.39414 * 119.92558 * 0.02562 * 7 6 5 9 9 C 1.48161 * 120.15986 * 179.97438 * 8 7 6 10 10 C 1.39849 * 120.51901 * 359.71368 * 9 8 7 11 11 C 1.38276 * 118.42154 * 179.76224 * 10 9 8 12 12 N 1.32414 * 119.28451 * 0.52025 * 11 10 9 13 13 C 1.32421 * 121.00301 * 359.73976 * 12 11 10 14 14 N 1.38942 * 119.14205 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99482 * 359.97438 * 14 13 12 16 16 O 1.21261 * 120.00664 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99590 * 179.97438 * 15 14 13 18 18 S 1.80996 * 109.47097 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99968 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00106 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99847 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99962 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00392 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46876 * 89.99868 * 23 21 19 25 25 H 1.48497 * 109.47379 * 210.00483 * 23 21 19 26 26 H 1.48508 * 109.46689 * 330.00320 * 23 21 19 27 27 N 1.32289 * 121.71855 * 359.97438 * 13 12 11 28 28 H 1.08995 * 109.47623 * 300.00234 * 1 2 3 29 29 H 1.09000 * 109.47177 * 60.00358 * 1 2 3 30 30 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.96707 * 0.27741 * 4 3 2 32 32 H 1.07997 * 119.83318 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.86461 * 180.02562 * 6 5 4 34 34 H 1.07994 * 120.04052 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.78727 * 0.03042 * 10 9 8 36 36 H 1.08004 * 120.36179 * 180.26542 * 11 10 9 37 37 H 0.96997 * 119.99985 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.46999 * 300.00351 * 17 15 14 39 39 H 1.09001 * 109.47199 * 59.99580 * 17 15 14 40 40 H 0.96994 * 119.99976 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2929 2.3742 -0.0005 5 6 1.9214 3.6043 -0.0011 6 6 3.3035 3.6831 -0.0005 7 6 4.0653 2.5333 0.0011 8 6 3.4421 1.2861 0.0016 9 6 4.2553 0.0477 0.0028 10 6 5.6521 0.1152 -0.0027 11 6 6.3683 -1.0676 0.0036 12 7 5.7158 -2.2198 0.0042 13 6 4.3921 -2.2540 0.0038 14 7 3.7470 -3.4847 0.0039 15 6 4.4681 -4.6233 0.0037 16 8 5.6797 -4.5739 0.0030 17 6 3.7685 -5.9582 0.0043 18 16 4.9999 -7.2847 0.0031 19 6 3.9363 -8.6895 0.0033 20 1 2.8646 -8.5554 0.0036 21 6 4.4757 -9.9683 0.0031 22 7 3.6811 -11.0178 0.0027 23 14 6.3293 -10.2003 0.0019 24 1 6.8213 -10.2616 1.4017 25 1 6.6695 -11.4649 -0.6983 26 1 6.9705 -9.0586 -0.6987 27 7 3.6677 -1.1471 0.0035 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2143 2.3194 0.0036 32 1 1.3315 4.5090 -0.0019 33 1 3.7871 4.6488 -0.0005 34 1 5.1432 2.5989 0.0019 35 1 6.1594 1.0687 -0.0074 36 1 7.4482 -1.0519 0.0040 37 1 2.7779 -3.5243 0.0040 38 1 3.1452 -6.0413 0.8946 39 1 3.1442 -6.0416 -0.8853 40 1 4.0581 -11.9115 0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132756919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:54 Heat of formation + Delta-G solvation = 33.449803 kcal Electronic energy + Delta-G solvation = -26015.746665 eV Core-core repulsion = 22116.748538 eV Total energy + Delta-G solvation = -3898.998127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35788 -40.33613 -39.05585 -37.70294 -34.95041 -34.15417 -32.44766 -32.10216 -30.55639 -30.34135 -29.06126 -27.55580 -25.64188 -25.11629 -24.07197 -22.44665 -22.15512 -20.46065 -18.71257 -18.48387 -17.65097 -17.29432 -16.35916 -16.19251 -16.05453 -15.72716 -15.68646 -15.66590 -15.04570 -14.95310 -14.46761 -14.28234 -13.91081 -13.81137 -13.54261 -13.45789 -13.20588 -12.80347 -12.43801 -12.29864 -12.00399 -11.45187 -11.44306 -11.28377 -11.05706 -11.00453 -10.99669 -10.86864 -10.66053 -9.87410 -9.64318 -9.31178 -9.00968 -8.90958 -8.77460 -8.53004 -8.32542 -6.93970 -6.29532 -4.01973 0.25210 0.98300 1.01852 1.57472 2.41755 2.86730 2.97416 3.02734 3.33437 3.33930 3.50665 3.53603 3.82509 4.01208 4.17335 4.30156 4.34354 4.43816 4.59145 4.71154 4.74709 4.85874 4.87240 4.94001 5.01172 5.07012 5.09493 5.16629 5.24178 5.27897 5.35375 5.58350 5.70021 5.80785 5.93070 5.95126 6.02246 6.05480 6.30967 6.53018 7.01467 7.10692 7.14949 7.93390 8.20696 8.40446 8.41332 9.16333 10.79547 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023635 B = 0.002193 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.378487 B =12762.210228 C =13926.140288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.272 6.272 3 C 0.174 3.826 4 C -0.221 4.221 5 C -0.061 4.061 6 C -0.167 4.167 7 C -0.051 4.051 8 C -0.095 4.095 9 C 0.251 3.749 10 C -0.266 4.266 11 C 0.179 3.821 12 N -0.507 5.507 13 C 0.548 3.452 14 N -0.642 5.642 15 C 0.523 3.477 16 O -0.444 6.444 17 C -0.121 4.121 18 S -0.136 6.136 19 C -0.522 4.522 20 H 0.090 0.910 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 N -0.525 5.525 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.171 0.829 37 H 0.422 0.578 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 32.726 -0.086 33.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.182 6.182 3 C 0.125 3.875 4 C -0.240 4.240 5 C -0.080 4.080 6 C -0.185 4.185 7 C -0.070 4.070 8 C -0.097 4.097 9 C 0.105 3.895 10 C -0.290 4.290 11 C 0.012 3.988 12 N -0.228 5.228 13 C 0.192 3.808 14 N -0.293 5.293 15 C 0.307 3.693 16 O -0.309 6.309 17 C -0.272 4.272 18 S 0.091 5.909 19 C -0.670 4.670 20 H 0.108 0.892 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 N -0.245 5.245 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.188 0.812 37 H 0.260 0.740 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.266 31.281 -0.090 31.452 hybrid contribution -1.203 0.543 0.034 1.321 sum -4.469 31.825 -0.056 32.137 Atomic orbital electron populations 1.23166 0.79080 1.04392 1.00959 1.86467 1.20300 1.24998 1.86471 1.19141 0.91293 0.85035 0.92023 1.21271 1.00380 0.92160 1.10173 1.21095 0.94777 0.97074 0.95037 1.20961 0.93805 0.98344 1.05371 1.21083 1.00312 0.90230 0.95366 1.17815 0.89535 0.91420 1.10937 1.19561 0.90151 0.89922 0.89916 1.22611 0.94895 1.01276 1.10254 1.23105 1.00934 0.86249 0.88474 1.68524 1.07648 1.29583 1.17009 1.19472 0.85558 0.85890 0.89928 1.43425 1.11366 1.02004 1.72469 1.20605 0.88173 0.84284 0.76225 1.90815 1.12930 1.85755 1.41436 1.23278 1.03764 0.93766 1.06351 1.84834 1.10892 0.97763 1.97450 1.22301 0.95254 0.90466 1.58933 0.89246 1.24707 0.98724 0.94714 0.93151 1.69936 1.35368 0.98323 1.47943 0.86741 0.85309 0.79877 0.79974 1.19167 1.19909 1.15872 1.67924 1.40011 0.97157 1.19426 0.92788 0.92791 0.87873 0.84987 0.85503 0.85290 0.84587 0.83686 0.81211 0.74024 0.87968 0.87927 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.27 -2.93 8.38 -19.06 -0.16 -3.09 16 3 C 0.17 1.76 6.69 -38.82 -0.26 1.50 16 4 C -0.22 -1.65 9.03 -39.47 -0.36 -2.01 16 5 C -0.06 -0.38 10.03 -39.55 -0.40 -0.77 16 6 C -0.17 -1.01 10.03 -39.62 -0.40 -1.41 16 7 C -0.05 -0.37 9.44 -39.26 -0.37 -0.74 16 8 C -0.10 -0.99 5.89 -104.77 -0.62 -1.60 16 9 C 0.25 3.12 6.76 -82.62 -0.56 2.56 16 10 C -0.27 -2.77 9.53 -38.97 -0.37 -3.14 16 11 C 0.18 2.22 11.29 -17.29 -0.20 2.03 16 12 N -0.51 -8.58 7.86 -13.91 -0.11 -8.69 16 13 C 0.55 8.89 8.38 -322.38 -2.70 6.19 16 14 N -0.64 -9.96 5.40 -13.09 -0.07 -10.03 16 15 C 0.52 9.83 7.81 -10.98 -0.09 9.74 16 16 O -0.44 -9.94 14.06 5.57 0.08 -9.87 16 17 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 18 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 19 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 20 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 23 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 27 N -0.52 -7.63 8.33 -10.38 -0.09 -7.72 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.13 0.72 6.30 -52.49 -0.33 0.39 16 32 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 33 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 34 H 0.14 0.68 6.27 -52.49 -0.33 0.35 16 35 H 0.15 0.94 6.32 -52.49 -0.33 0.61 16 36 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.42 5.18 8.81 -40.82 -0.36 4.82 16 38 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 39 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -37.26 359.59 -10.00 -47.26 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.26 Total: 1.36 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -4.88 Total: -0.59 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.51 Total: -52.14 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.26 -10.00 -47.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132756919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.711 kcal (2) G-P(sol) polarization free energy of solvation -37.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds