Wall clock time and date at job start Wed Apr 1 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35783 * 117.00079 * 2 1 4 4 C 1.38640 * 120.12363 * 359.97438 * 3 2 1 5 5 C 1.38135 * 120.06119 * 180.02562 * 4 3 2 6 6 C 1.38438 * 120.32597 * 359.97438 * 5 4 3 7 7 C 1.37927 * 120.26113 * 359.97438 * 6 5 4 8 8 C 1.39414 * 119.92558 * 0.02562 * 7 6 5 9 9 C 1.48161 * 120.15986 * 179.97438 * 8 7 6 10 10 C 1.39849 * 120.51901 * 359.71368 * 9 8 7 11 11 C 1.38276 * 118.42154 * 179.76224 * 10 9 8 12 12 N 1.32414 * 119.28451 * 0.52025 * 11 10 9 13 13 C 1.32421 * 121.00301 * 359.73976 * 12 11 10 14 14 N 1.38942 * 119.14205 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99482 * 359.97438 * 14 13 12 16 16 O 1.21261 * 120.00664 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99590 * 179.97438 * 15 14 13 18 18 S 1.80996 * 109.47097 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99968 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00106 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99847 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99962 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00392 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46876 * 89.99868 * 23 21 19 25 25 H 1.48497 * 109.47379 * 210.00483 * 23 21 19 26 26 H 1.48508 * 109.46689 * 330.00320 * 23 21 19 27 27 N 1.32289 * 121.71855 * 359.97438 * 13 12 11 28 28 H 1.08995 * 109.47623 * 300.00234 * 1 2 3 29 29 H 1.09000 * 109.47177 * 60.00358 * 1 2 3 30 30 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.96707 * 0.27741 * 4 3 2 32 32 H 1.07997 * 119.83318 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.86461 * 180.02562 * 6 5 4 34 34 H 1.07994 * 120.04052 * 180.02562 * 7 6 5 35 35 H 1.08000 * 120.78727 * 0.03042 * 10 9 8 36 36 H 1.08004 * 120.36179 * 180.26542 * 11 10 9 37 37 H 0.96997 * 119.99985 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.46999 * 300.00351 * 17 15 14 39 39 H 1.09001 * 109.47199 * 59.99580 * 17 15 14 40 40 H 0.96994 * 119.99976 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2929 2.3742 -0.0005 5 6 1.9214 3.6043 -0.0011 6 6 3.3035 3.6831 -0.0005 7 6 4.0653 2.5333 0.0011 8 6 3.4421 1.2861 0.0016 9 6 4.2553 0.0477 0.0028 10 6 5.6521 0.1152 -0.0027 11 6 6.3683 -1.0676 0.0036 12 7 5.7158 -2.2198 0.0042 13 6 4.3921 -2.2540 0.0038 14 7 3.7470 -3.4847 0.0039 15 6 4.4681 -4.6233 0.0037 16 8 5.6797 -4.5739 0.0030 17 6 3.7685 -5.9582 0.0043 18 16 4.9999 -7.2847 0.0031 19 6 3.9363 -8.6895 0.0033 20 1 2.8646 -8.5554 0.0036 21 6 4.4757 -9.9683 0.0031 22 7 3.6811 -11.0178 0.0027 23 14 6.3293 -10.2003 0.0019 24 1 6.8213 -10.2616 1.4017 25 1 6.6695 -11.4649 -0.6983 26 1 6.9705 -9.0586 -0.6987 27 7 3.6677 -1.1471 0.0035 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2143 2.3194 0.0036 32 1 1.3315 4.5090 -0.0019 33 1 3.7871 4.6488 -0.0005 34 1 5.1432 2.5989 0.0019 35 1 6.1594 1.0687 -0.0074 36 1 7.4482 -1.0519 0.0040 37 1 2.7779 -3.5243 0.0040 38 1 3.1452 -6.0413 0.8946 39 1 3.1442 -6.0416 -0.8853 40 1 4.0581 -11.9115 0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132756919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:53 Heat of formation + Delta-G solvation = 10.303614 kcal Electronic energy + Delta-G solvation = -26016.750360 eV Core-core repulsion = 22116.748538 eV Total energy + Delta-G solvation = -3900.001821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.36003 -41.08825 -40.30954 -38.29477 -36.20009 -35.08382 -34.67514 -33.08154 -31.45293 -31.00198 -30.31709 -28.09951 -27.86830 -25.95926 -25.07592 -23.31196 -22.75555 -21.63869 -20.12657 -19.46493 -18.99134 -18.42781 -17.45652 -17.14627 -17.06473 -16.98701 -16.59589 -16.55131 -16.43553 -15.95185 -15.69951 -15.50841 -15.14310 -14.88672 -14.78664 -14.39377 -14.25433 -13.96031 -13.63452 -13.35869 -13.02384 -12.92252 -12.72029 -12.50811 -12.18055 -12.11733 -11.98193 -11.92105 -11.88151 -11.79457 -11.17360 -11.04029 -10.56704 -10.08892 -9.99538 -9.60973 -9.02799 -9.00089 -8.51736 -6.23167 -0.49476 -0.02197 0.48203 0.81016 0.85631 1.31662 1.34999 1.48635 1.50086 1.77067 2.24604 2.43491 2.63520 2.68587 2.86411 2.99072 3.07215 3.24621 3.45903 3.84365 3.92917 3.99524 4.16429 4.18319 4.24736 4.35021 4.40531 4.40868 4.42886 4.49887 4.61498 4.66146 4.77206 4.91915 5.04247 5.27200 5.40344 5.50215 5.55626 5.70715 5.84199 5.93098 6.11604 6.12023 6.51322 6.91229 6.93303 7.26513 8.60475 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.023635 B = 0.002193 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.378487 B =12762.210228 C =13926.140288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.303 6.303 3 C 0.150 3.850 4 C -0.228 4.228 5 C -0.057 4.057 6 C -0.165 4.165 7 C -0.049 4.049 8 C -0.127 4.127 9 C 0.235 3.765 10 C -0.244 4.244 11 C 0.164 3.836 12 N -0.552 5.552 13 C 0.522 3.478 14 N -0.629 5.629 15 C 0.533 3.467 16 O -0.486 6.486 17 C -0.106 4.106 18 S -0.166 6.166 19 C -0.529 4.529 20 H 0.065 0.935 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.237 1.237 27 N -0.532 5.532 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.434 0.566 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.446 36.499 -0.103 36.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.214 6.214 3 C 0.102 3.898 4 C -0.246 4.246 5 C -0.075 4.075 6 C -0.183 4.183 7 C -0.068 4.068 8 C -0.129 4.129 9 C 0.090 3.910 10 C -0.267 4.267 11 C -0.001 4.001 12 N -0.274 5.274 13 C 0.166 3.834 14 N -0.281 5.281 15 C 0.317 3.683 16 O -0.354 6.354 17 C -0.257 4.257 18 S 0.060 5.940 19 C -0.676 4.676 20 H 0.083 0.917 21 C -0.160 4.160 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.161 1.161 27 N -0.253 5.253 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.207 0.793 36 H 0.215 0.785 37 H 0.275 0.725 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.865 35.112 -0.108 35.229 hybrid contribution -1.492 -0.293 0.044 1.522 sum -4.358 34.819 -0.064 35.091 Atomic orbital electron populations 1.23333 0.77581 1.05079 1.02057 1.86404 1.22099 1.26078 1.86836 1.19475 0.91723 0.85611 0.93015 1.21522 1.01225 0.91921 1.09962 1.21541 0.95361 0.97548 0.93058 1.21376 0.93888 0.99163 1.03869 1.21410 1.01701 0.89397 0.94267 1.18049 0.89816 0.91544 1.13510 1.20184 0.91554 0.89980 0.89321 1.23026 0.94105 1.02418 1.07147 1.23674 1.02309 0.85869 0.88207 1.68436 1.08278 1.32120 1.18546 1.19519 0.85847 0.86200 0.91836 1.43021 1.11776 1.01454 1.71872 1.20304 0.87571 0.84693 0.75709 1.90795 1.14436 1.86356 1.43822 1.23218 1.02187 0.92010 1.08248 1.84745 1.12958 0.98668 1.97611 1.22443 0.94752 0.92107 1.58325 0.91652 1.25547 1.02945 0.94573 0.92912 1.70012 1.37291 0.98979 1.49046 0.85883 0.80185 0.80177 0.80230 1.18685 1.18293 1.16067 1.67951 1.40147 0.97497 1.19681 0.91634 0.91641 0.87514 0.83459 0.82611 0.82300 0.82226 0.79328 0.78458 0.72544 0.86068 0.86040 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.30 -6.52 8.38 -91.12 -0.76 -7.28 16 3 C 0.15 2.89 6.69 22.76 0.15 3.05 16 4 C -0.23 -2.93 9.03 22.34 0.20 -2.73 16 5 C -0.06 -0.50 10.03 22.29 0.22 -0.27 16 6 C -0.17 -1.35 10.03 22.24 0.22 -1.13 16 7 C -0.05 -0.56 9.44 22.48 0.21 -0.35 16 8 C -0.13 -2.45 5.89 -19.96 -0.12 -2.57 16 9 C 0.24 5.63 6.76 41.97 0.28 5.91 16 10 C -0.24 -4.58 9.53 22.67 0.22 -4.37 16 11 C 0.16 3.91 11.29 84.61 0.96 4.86 16 12 N -0.55 -18.87 7.86 -197.91 -1.55 -20.43 16 13 C 0.52 17.23 8.38 261.34 2.19 19.42 16 14 N -0.63 -19.83 5.40 -313.72 -1.69 -21.52 16 15 C 0.53 20.25 7.81 87.66 0.68 20.93 16 16 O -0.49 -22.16 14.06 -2.97 -0.04 -22.21 16 17 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 18 S -0.17 -8.47 18.55 -56.49 -1.05 -9.52 16 19 C -0.53 -30.83 10.04 67.95 0.68 -30.15 16 20 H 0.07 4.00 8.03 -2.91 -0.02 3.97 16 21 C 0.05 2.70 5.50 84.86 0.47 3.17 16 22 N -0.92 -55.89 13.97 21.65 0.30 -55.59 16 23 Si 0.91 45.28 27.74 68.60 1.90 47.18 16 24 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 27 N -0.53 -15.58 8.33 -186.75 -1.56 -17.13 16 28 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 30 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.15 1.29 6.30 -2.91 -0.02 1.27 16 32 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 33 H 0.16 0.35 8.06 -2.91 -0.02 0.33 16 34 H 0.16 0.90 6.27 -2.91 -0.02 0.88 16 35 H 0.19 1.67 6.32 -2.91 -0.02 1.66 16 36 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.43 10.80 8.81 -92.71 -0.82 9.98 16 38 H 0.12 4.23 8.14 -2.40 -0.02 4.21 16 39 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 40 H 0.28 15.65 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -83.70 359.59 3.72 -79.98 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.25 Total: 13.09 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 7.92 Total: 13.43 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -4.50 Total: -114.67 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.81 Total: -29.49 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.05 Total: -9.52 kcal Total: -83.70 3.72 -79.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132756919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.280 kcal (2) G-P(sol) polarization free energy of solvation -83.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds